Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17530

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,984,984	+				-0.5
3,984,984	+				-0.3
3,984,984	+				-0.2
3,984,984	+				+0.5
3,984,985	-				+0.6
3,984,985	-				-0.2
3,984,985	-				-0.6
3,984,985	-				-0.7
3,984,985	-				+1.8
3,984,985	-				+0.4
3,984,985	-				+0.3
3,984,985	-				-0.4
3,984,985	-				+0.7
3,984,985	-				-0.9
3,984,985	-				+1.4
3,985,157	+				-0.3
3,985,167	-				-0.1
3,985,196	-				+0.5
3,985,216	-				-2.4
3,985,217	+				+0.5
3,985,217	+				+0.1
3,985,218	-				-1.9
3,985,218	-				-2.4
3,985,218	-				+0.1
3,985,226	+				+0.2
3,985,226	+				+0.1
3,985,226	+				-1.0
3,985,227	-				-0.8
3,985,252	+				+0.5
3,985,253	-				+0.4
3,985,277	+				+2.2
3,985,278	-				-0.6
3,985,286	+				+0.1
3,985,287	-				-0.7
3,985,313	+				+0.3
3,985,314	-				+0.7
3,985,314	-				+0.2
3,985,337	+				-0.6
3,985,346	+				-0.6
3,985,407	-				+0.0
3,985,407	-				+0.2
3,985,413	+				-0.2
3,985,414	-				-0.5
3,985,426	+				+1.1
3,985,427	-				+0.4
3,985,442	+				+0.8
3,985,442	+				-1.4
3,985,442	+				-0.4
3,985,442	+				-1.4
3,985,442	+				-0.9
3,985,443	-				+0.2
3,985,443	-				+0.1
3,985,443	-				+0.1
3,985,465	+				+0.1
3,985,465	+				+0.5
3,985,546	-				+2.5
3,985,553	-				-1.6
3,985,751	+				+1.1
3,985,752	-				-0.2
3,985,757	-				+0.3
3,985,757	-				+0.6
3,985,834	+				-1.7
3,985,835	-				-0.2
3,985,992	+				-1.2
3,986,102	+		DDA3937_RS17530	0.12	+0.0
3,986,102	+		DDA3937_RS17530	0.12	-0.4
3,986,102	+		DDA3937_RS17530	0.12	+0.6
3,986,102	+		DDA3937_RS17530	0.12	-0.6
3,986,102	+		DDA3937_RS17530	0.12	-1.4
3,986,102	+		DDA3937_RS17530	0.12	-0.7
3,986,102	+		DDA3937_RS17530	0.12	-0.5
3,986,102	+		DDA3937_RS17530	0.12	-0.1
3,986,102	+		DDA3937_RS17530	0.12	-0.5
3,986,102	+		DDA3937_RS17530	0.12	+0.1
3,986,102	+		DDA3937_RS17530	0.12	-1.0
3,986,102	+		DDA3937_RS17530	0.12	+0.5
3,986,102	+		DDA3937_RS17530	0.12	+0.4
3,986,102	+		DDA3937_RS17530	0.12	-0.9
3,986,103	-		DDA3937_RS17530	0.12	-0.7
3,986,103	-		DDA3937_RS17530	0.12	-0.3
3,986,103	-		DDA3937_RS17530	0.12	+0.6
3,986,103	-		DDA3937_RS17530	0.12	-0.4
3,986,103	-		DDA3937_RS17530	0.12	+1.1
3,986,103	-		DDA3937_RS17530	0.12	-0.3
3,986,103	-		DDA3937_RS17530	0.12	+0.6
3,986,103	-		DDA3937_RS17530	0.12	+0.3
3,986,104	+		DDA3937_RS17530	0.12	+1.0
3,986,104	+		DDA3937_RS17530	0.12	+1.4
3,986,104	+		DDA3937_RS17530	0.12	-1.6
3,986,104	+		DDA3937_RS17530	0.12	-1.7
3,986,104	+		DDA3937_RS17530	0.12	-0.6
3,986,104	+		DDA3937_RS17530	0.12	-0.6
3,986,104	+		DDA3937_RS17530	0.12	+1.0
3,986,104	+		DDA3937_RS17530	0.12	+0.3
3,986,105	-		DDA3937_RS17530	0.12	-0.6
3,986,105	-		DDA3937_RS17530	0.12	+2.3
3,986,105	-		DDA3937_RS17530	0.12	-1.7
3,986,105	-		DDA3937_RS17530	0.12	+0.7
3,986,206	+		DDA3937_RS17530	0.19	+0.8
3,986,206	+		DDA3937_RS17530	0.19	+0.2
3,986,207	-		DDA3937_RS17530	0.19	-1.5
3,986,207	-		DDA3937_RS17530	0.19	-0.1
3,986,207	-		DDA3937_RS17530	0.19	-1.2
3,986,268	+		DDA3937_RS17530	0.24	+1.3
3,986,268	+		DDA3937_RS17530	0.24	+1.3
3,986,268	+		DDA3937_RS17530	0.24	+0.0
3,986,409	+		DDA3937_RS17530	0.34	-0.0
3,986,409	+		DDA3937_RS17530	0.34	-1.7
3,986,410	-		DDA3937_RS17530	0.34	-2.4
3,986,424	+		DDA3937_RS17530	0.35	-1.2
3,986,425	-		DDA3937_RS17530	0.35	-1.1
3,986,425	-		DDA3937_RS17530	0.35	+0.9
3,986,544	+		DDA3937_RS17530	0.44	-0.4
3,986,577	+		DDA3937_RS17530	0.46	-0.2
3,986,577	+		DDA3937_RS17530	0.46	-0.6
3,986,577	+		DDA3937_RS17530	0.46	-0.7
3,986,577	+		DDA3937_RS17530	0.46	+1.6
3,986,578	-		DDA3937_RS17530	0.46	+0.1
3,986,578	-		DDA3937_RS17530	0.46	+0.7
3,986,578	-		DDA3937_RS17530	0.46	-0.5
3,986,585	+		DDA3937_RS17530	0.47	+0.6
3,986,585	+		DDA3937_RS17530	0.47	-0.6
3,986,586	-		DDA3937_RS17530	0.47	-1.0
3,986,586	-		DDA3937_RS17530	0.47	+0.9
3,986,595	+		DDA3937_RS17530	0.47	+0.3
3,986,624	-		DDA3937_RS17530	0.50	-1.1
3,986,840	+		DDA3937_RS17530	0.65	+0.7
3,986,840	+		DDA3937_RS17530	0.65	-1.0
3,986,841	-		DDA3937_RS17530	0.65	-1.0
3,986,849	-		DDA3937_RS17530	0.66	-1.4
3,986,849	-		DDA3937_RS17530	0.66	+0.0
3,986,877	+		DDA3937_RS17530	0.68	-2.3
3,986,878	-		DDA3937_RS17530	0.68	-1.7
3,986,891	-		DDA3937_RS17530	0.69	-2.0
3,986,908	+		DDA3937_RS17530	0.70	-0.4
3,986,965	-		DDA3937_RS17530	0.74	-1.7
3,986,965	-		DDA3937_RS17530	0.74	-1.2
3,986,965	-		DDA3937_RS17530	0.74	+0.1
3,986,965	-		DDA3937_RS17530	0.74	-0.6
3,986,973	+		DDA3937_RS17530	0.75	+0.4
3,986,973	+		DDA3937_RS17530	0.75	+0.5
3,986,973	+		DDA3937_RS17530	0.75	-0.0
3,986,973	+		DDA3937_RS17530	0.75	-1.7
3,986,973	+		DDA3937_RS17530	0.75	+1.1
3,986,973	+		DDA3937_RS17530	0.75	-1.3
3,986,973	+		DDA3937_RS17530	0.75	-0.1
3,986,974	-		DDA3937_RS17530	0.75	-0.1
3,986,974	-		DDA3937_RS17530	0.75	-0.9
3,986,974	-		DDA3937_RS17530	0.75	-1.4
3,986,974	-		DDA3937_RS17530	0.75	+1.5
3,986,974	-		DDA3937_RS17530	0.75	-0.2
3,986,974	-		DDA3937_RS17530	0.75	+0.0
3,987,015	+		DDA3937_RS17530	0.78	+0.2
3,987,015	+		DDA3937_RS17530	0.78	-1.3
3,987,015	+		DDA3937_RS17530	0.78	-1.2
3,987,015	+		DDA3937_RS17530	0.78	-0.4
3,987,016	-				+0.4
3,987,016	-		DDA3937_RS17530	0.78	+1.0
3,987,016	-		DDA3937_RS17530	0.78	-2.3
3,987,016	-		DDA3937_RS17530	0.78	-1.2
3,987,016	-		DDA3937_RS17530	0.78	+0.1
3,987,016	-		DDA3937_RS17530	0.78	-0.5
3,987,016	-		DDA3937_RS17530	0.78	-0.7
3,987,028	-		DDA3937_RS17530	0.79	+0.7
3,987,028	-		DDA3937_RS17530	0.79	-1.7
3,987,028	-		DDA3937_RS17530	0.79	+0.8
3,987,066	+		DDA3937_RS17530	0.82	-0.7
3,987,066	+		DDA3937_RS17530	0.82	-1.7
3,987,136	+		DDA3937_RS17530	0.87	-1.4
3,987,265	+				+0.4
3,987,266	-				-0.1
3,987,290	+				+0.6
3,987,290	+				-1.2
3,987,290	+				-2.3
3,987,350	+				-0.9
3,987,350	+				-0.9
3,987,354	+				+1.5
3,987,355	-				-0.9
3,987,355	-				+1.0
3,987,373	+				-0.6
3,987,374	-				+1.8
3,987,404	+				+2.0
3,987,425	-				-1.8
3,987,496	+				+0.1
3,987,496	+				-1.3
3,987,501	+				+0.4
3,987,501	+				-2.3
3,987,501	+				-0.9
3,987,501	+				+0.3
3,987,502	-				+2.0
3,987,502	-				-1.2
3,987,502	-				-2.6
3,987,502	-				-0.2
3,987,550	+				-2.2
3,987,550	+				+2.1
3,987,550	+				+1.0
3,987,550	+				-0.3
3,987,550	+				-0.9
3,987,550	+				+1.6
3,987,550	+				+0.8
3,987,550	+				+0.4
3,987,550	+				-0.6
3,987,551	-				-0.7
3,987,551	-				-2.2
3,987,551	-				-1.0
3,987,555	+				-1.4
3,987,555	+				-1.6
3,987,608	+				+0.8
3,987,608	+				+0.4
3,987,608	+				-0.2
3,987,609	-				-0.4
3,987,609	-				+0.9
3,987,609	-				-0.2
3,987,609	-				-2.2
3,987,650	+				-0.1
3,987,650	+				-1.4
3,987,650	+				+2.4
3,987,650	+				-0.2
3,987,651	-				-1.4
3,987,651	-				+1.0
3,987,651	-				-1.2
3,987,651	-				-1.9
3,987,686	+				+0.4
3,987,686	+				-0.0
3,987,686	+				-1.0
3,987,686	+				+1.4
3,987,686	+				+0.8
3,987,686	+				+0.6
3,987,686	+				-0.1
3,987,687	-				+0.0
3,987,687	-				+0.8
3,987,687	-				+1.4
3,987,687	-				+1.3
3,987,687	-				+0.4
3,987,690	+				+0.4
3,987,690	+				+0.8
3,987,690	+				-1.6
3,987,690	+				+0.6
3,987,690	+				-0.2
3,987,690	+				-0.3
3,987,690	+				+1.0
3,987,690	+				+0.1
3,987,691	-				-2.6
3,987,691	-				+0.0
3,987,691	-				-2.4
3,987,750	-		DDA3937_RS17535	0.13	-0.7
3,987,750	-		DDA3937_RS17535	0.13	-0.7
3,987,750	-		DDA3937_RS17535	0.13	+1.1
3,987,750	-		DDA3937_RS17535	0.13	-1.3
3,987,809	+		DDA3937_RS17535	0.26	+0.7
3,987,810	-		DDA3937_RS17535	0.26	-1.2
3,987,810	-		DDA3937_RS17535	0.26	+1.4
3,987,810	-		DDA3937_RS17535	0.26	-0.6
3,987,901	+		DDA3937_RS17535	0.45	+0.8
3,987,902	-		DDA3937_RS17535	0.45	-0.9
3,987,902	-		DDA3937_RS17535	0.45	-1.6
3,987,902	-		DDA3937_RS17535	0.45	-1.4
3,987,902	-		DDA3937_RS17535	0.45	-0.5
3,987,931	+		DDA3937_RS17535	0.51	+0.4
3,987,932	-		DDA3937_RS17535	0.51	-0.2
3,987,932	-		DDA3937_RS17535	0.51	-1.2
3,987,932	-		DDA3937_RS17535	0.51	+0.3
3,988,005	+		DDA3937_RS17535	0.67	+1.0
3,988,005	+		DDA3937_RS17535	0.67	-2.3
3,988,005	+		DDA3937_RS17535	0.67	+1.2
3,988,005	+		DDA3937_RS17535	0.67	+1.1
3,988,005	+		DDA3937_RS17535	0.67	-0.2
3,988,005	+				+3.7
3,988,006	-		DDA3937_RS17535	0.67	-0.0
3,988,006	-		DDA3937_RS17535	0.67	+0.0
3,988,006	-		DDA3937_RS17535	0.67	-1.4
3,988,012	+		DDA3937_RS17535	0.68	-0.7
3,988,013	-		DDA3937_RS17535	0.68	+0.4
3,988,013	-		DDA3937_RS17535	0.68	-0.2
3,988,013	-		DDA3937_RS17535	0.68	-1.2
3,988,199	+				-0.6
3,988,203	+				+0.1
3,988,203	+				+0.8
3,988,203	+				-0.6
3,988,204	-				-0.6
3,988,204	-				-3.0
3,988,249	+				-0.1
3,988,250	-				+1.4
3,988,257	-				+0.0
3,988,306	-				+1.0