Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16405

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,742,402	-		DDA3937_RS16400	0.47	+0.8
3,742,402	-		DDA3937_RS16400	0.47	+0.9
3,742,704	+		DDA3937_RS16400	0.65	+0.3
3,742,787	+		DDA3937_RS16400	0.70	+0.2
3,742,788	-		DDA3937_RS16400	0.70	-0.9
3,742,834	+		DDA3937_RS16400	0.73	-2.4
3,742,834	+		DDA3937_RS16400	0.73	-2.7
3,742,834	+		DDA3937_RS16400	0.73	-1.0
3,742,835	-		DDA3937_RS16400	0.73	+2.0
3,742,835	-		DDA3937_RS16400	0.73	+0.9
3,742,836	+		DDA3937_RS16400	0.73	-0.2
3,742,836	+		DDA3937_RS16400	0.73	-0.9
3,742,836	+		DDA3937_RS16400	0.73	-2.2
3,742,836	+		DDA3937_RS16400	0.73	-0.1
3,742,836	+		DDA3937_RS16400	0.73	-0.8
3,742,836	+		DDA3937_RS16400	0.73	+0.6
3,742,836	+		DDA3937_RS16400	0.73	+2.0
3,742,836	+		DDA3937_RS16400	0.73	-0.4
3,742,837	-		DDA3937_RS16400	0.73	-1.8
3,742,837	-		DDA3937_RS16400	0.73	+0.4
3,742,837	-		DDA3937_RS16400	0.73	-0.1
3,742,837	-		DDA3937_RS16400	0.73	-0.9
3,743,094	+		DDA3937_RS16400	0.88	-0.3
3,743,102	+		DDA3937_RS16400	0.89	+0.6
3,743,157	+				-1.0
3,743,158	-				+0.2
3,743,158	-				-0.8
3,743,220	+				-0.6
3,743,220	+				-0.2
3,743,221	-				-0.6
3,743,221	-				+0.8
3,743,222	+				-0.4
3,743,222	+				-1.8
3,743,222	+				-2.0
3,743,223	-				-1.1
3,743,264	-				+0.2
3,743,283	+				-1.6
3,743,283	+				-0.6
3,743,283	+				-1.2
3,743,283	+				+0.5
3,743,284	-				+0.8
3,743,284	-				-0.0
3,743,284	-				-0.8
3,743,284	-				+0.5
3,743,284	-				+0.0
3,743,318	+				-1.6
3,743,318	+				-1.9
3,743,318	+				-1.2
3,743,318	+				-1.6
3,743,318	+				-0.4
3,743,318	+				-0.1
3,743,319	-				-0.3
3,743,319	-				+0.6
3,743,319	-				-1.0
3,743,319	-				-0.6
3,743,319	-				-0.6
3,743,319	-				-0.2
3,743,319	-				+0.4
3,743,321	+				-0.2
3,743,321	+				+0.3
3,743,322	-				+0.8
3,743,322	-				+0.7
3,743,322	-				-0.6
3,743,322	-				+0.8
3,743,322	-				-1.0
3,743,328	+				-1.0
3,743,621	-		DDA3937_RS16405	0.26	-0.8
3,743,621	-		DDA3937_RS16405	0.26	-0.6
3,743,728	+		DDA3937_RS16405	0.35	-0.4
3,743,729	-		DDA3937_RS16405	0.35	+1.9
3,743,729	-		DDA3937_RS16405	0.35	-0.8
3,743,729	-		DDA3937_RS16405	0.35	-2.0
3,743,729	-		DDA3937_RS16405	0.35	-0.9
3,743,745	-		DDA3937_RS16405	0.36	+0.1
3,743,745	-		DDA3937_RS16405	0.36	-0.2
3,743,764	-		DDA3937_RS16405	0.38	-2.0
3,743,823	+		DDA3937_RS16405	0.42	-0.6
3,744,027	-		DDA3937_RS16405	0.59	+1.7
3,744,027	-		DDA3937_RS16405	0.59	+0.0
3,744,027	-		DDA3937_RS16405	0.59	-0.9
3,744,292	+		DDA3937_RS16405	0.80	+0.2
3,744,293	-		DDA3937_RS16405	0.81	-1.0
3,744,293	-		DDA3937_RS16405	0.81	-0.6
3,744,349	+		DDA3937_RS16405	0.85	+0.2
3,744,349	+		DDA3937_RS16405	0.85	-2.0
3,744,350	-		DDA3937_RS16405	0.85	-0.1
3,744,380	+		DDA3937_RS16405	0.88	+0.7
3,744,474	-				-0.5
3,744,481	+				-0.3
3,744,481	+				+0.9
3,744,481	+				+0.5
3,744,481	+				-0.6
3,744,481	+				+1.1
3,744,482	-				-1.5
3,744,482	-				-0.0
3,744,482	-				-3.1
3,744,482	-				-0.8
3,744,497	+				+1.7
3,744,497	+				+0.2
3,744,498	-				+0.1
3,744,539	+				-0.9
3,744,559	-				-3.4
3,744,559	-				-0.7
3,744,612	+				+0.2
3,744,626	-				+0.8
3,744,626	-				+0.4
3,744,648	-				+0.4
3,744,648	-				+0.1
3,744,668	+				+1.0
3,744,668	+				-0.6
3,744,669	-				-1.8
3,744,706	+				-0.2
3,744,706	+				-0.2
3,744,706	+				+0.2
3,744,706	+				-1.4
3,744,707	-				-1.7
3,744,707	-				-1.9
3,744,707	-				+0.4
3,744,707	-				-0.7
3,744,777	-		DDA3937_RS16410	0.23	-0.6
3,744,779	+		DDA3937_RS16410	0.24	-0.5
3,744,779	+		DDA3937_RS16410	0.24	-1.4
3,744,779	+		DDA3937_RS16410	0.24	+1.3
3,744,779	+		DDA3937_RS16410	0.24	+0.1
3,744,784	-		DDA3937_RS16410	0.26	-2.6
3,744,856	+		DDA3937_RS16410	0.49	+1.4
3,744,857	-		DDA3937_RS16410	0.49	-1.0
3,744,857	-		DDA3937_RS16410	0.49	+2.4
3,744,857	-		DDA3937_RS16410	0.49	-1.4
3,744,857	-		DDA3937_RS16410	0.49	-1.0
3,744,867	-		DDA3937_RS16410	0.52	+1.0
3,744,888	+		DDA3937_RS16410	0.59	+0.9
3,744,888	+		DDA3937_RS16410	0.59	-1.4
3,744,920	+		DDA3937_RS16410	0.70	-0.8
3,744,920	+		DDA3937_RS16410	0.70	-2.8
3,744,920	+		DDA3937_RS16410	0.70	+0.2
3,744,924	-		DDA3937_RS16410	0.71	-0.6
3,744,956	+		DDA3937_RS16410	0.81	+0.0
3,744,956	+		DDA3937_RS16410	0.81	-0.0
3,744,988	+				+0.5
3,744,989	-				-0.1
3,744,989	-				-0.5
3,744,998	+				-2.0
3,745,002	-				+3.0
3,745,002	-				+0.4
3,745,002	-				-1.0
3,745,008	+				+0.4
3,745,008	+				-0.5
3,745,008	+				-0.1
3,745,008	+				+1.0
3,745,009	-				-0.8
3,745,009	-				-0.4
3,745,009	-				+0.2
3,745,009	-				+1.1
3,745,009	-				+0.6
3,745,009	-				+0.0
3,745,026	-				-0.4
3,745,026	-				-0.2
3,745,026	-				-1.2
3,745,029	+				-1.2
3,745,029	+				-0.9
3,745,030	-				+1.4
3,745,030	-				-0.7
3,745,058	-				-0.4
3,745,058	-				-0.6
3,745,103	+		DDA3937_RS16415	0.11	-1.2
3,745,143	+		DDA3937_RS16415	0.17	-2.2
3,745,147	+		DDA3937_RS16415	0.18	+0.5
3,745,147	+		DDA3937_RS16415	0.18	+0.7
3,745,186	-		DDA3937_RS16415	0.24	-1.2
3,745,298	-		DDA3937_RS16415	0.42	+0.8
3,745,299	+				+0.8
3,745,300	-		DDA3937_RS16415	0.42	+1.0
3,745,300	-		DDA3937_RS16415	0.42	-0.1
3,745,303	+		DDA3937_RS16415	0.43	-0.6
3,745,303	+		DDA3937_RS16415	0.43	-0.6
3,745,303	+		DDA3937_RS16415	0.43	+0.4
3,745,303	+		DDA3937_RS16415	0.43	-1.4
3,745,303	+		DDA3937_RS16415	0.43	-1.2
3,745,303	+		DDA3937_RS16415	0.43	+0.2
3,745,303	+		DDA3937_RS16415	0.43	-0.7
3,745,303	+		DDA3937_RS16415	0.43	-0.2
3,745,304	-		DDA3937_RS16415	0.43	-1.8
3,745,304	-		DDA3937_RS16415	0.43	-0.8
3,745,304	-		DDA3937_RS16415	0.43	-0.2
3,745,304	-		DDA3937_RS16415	0.43	+0.4
3,745,304	-		DDA3937_RS16415	0.43	-1.3
3,745,330	+		DDA3937_RS16415	0.47	-0.0
3,745,478	+		DDA3937_RS16415	0.71	-0.2
3,745,479	-		DDA3937_RS16415	0.71	+1.0
3,745,479	-		DDA3937_RS16415	0.71	+3.1