Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16060

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,667,623	+				-0.6
3,667,623	+				+0.1
3,667,624	-				-3.1
3,667,624	-				-0.5
3,667,665	+				-1.1
3,667,665	+				-0.4
3,667,666	-				-2.4
3,667,795	+		DDA3937_RS16055	0.21	-0.1
3,667,795	+		DDA3937_RS16055	0.21	-0.3
3,667,796	-		DDA3937_RS16055	0.21	-1.2
3,667,796	-		DDA3937_RS16055	0.21	-1.5
3,667,796	-		DDA3937_RS16055	0.21	-0.2
3,667,846	+		DDA3937_RS16055	0.28	-1.2
3,667,846	+		DDA3937_RS16055	0.28	+1.6
3,667,846	+		DDA3937_RS16055	0.28	-0.1
3,667,846	+		DDA3937_RS16055	0.28	-0.6
3,667,846	+		DDA3937_RS16055	0.28	-0.8
3,667,846	+		DDA3937_RS16055	0.28	+0.1
3,667,846	+		DDA3937_RS16055	0.28	-1.2
3,667,847	-		DDA3937_RS16055	0.28	-1.0
3,667,847	-		DDA3937_RS16055	0.28	+0.5
3,667,849	+		DDA3937_RS16055	0.28	-0.7
3,667,849	+		DDA3937_RS16055	0.28	+0.1
3,667,849	+		DDA3937_RS16055	0.28	-1.5
3,667,850	-		DDA3937_RS16055	0.28	+1.3
3,668,064	+		DDA3937_RS16055	0.58	-1.6
3,668,064	+		DDA3937_RS16055	0.58	-0.3
3,668,064	+		DDA3937_RS16055	0.58	+0.6
3,668,064	+		DDA3937_RS16055	0.58	+0.2
3,668,072	+		DDA3937_RS16055	0.59	-0.4
3,668,072	+		DDA3937_RS16055	0.59	-2.1
3,668,072	+		DDA3937_RS16055	0.59	-0.9
3,668,072	+		DDA3937_RS16055	0.59	-2.6
3,668,073	-		DDA3937_RS16055	0.59	+0.0
3,668,124	+		DDA3937_RS16055	0.66	+0.4
3,668,188	+		DDA3937_RS16055	0.75	-1.3
3,668,188	+		DDA3937_RS16055	0.75	-3.5
3,668,188	+		DDA3937_RS16055	0.75	-0.4
3,668,188	+		DDA3937_RS16055	0.75	+2.5
3,668,188	+		DDA3937_RS16055	0.75	-1.8
3,668,188	+		DDA3937_RS16055	0.75	+2.1
3,668,189	-		DDA3937_RS16055	0.75	-0.5
3,668,189	-		DDA3937_RS16055	0.75	-0.4
3,668,189	-		DDA3937_RS16055	0.75	+0.6
3,668,192	+		DDA3937_RS16055	0.76	-0.2
3,668,192	+		DDA3937_RS16055	0.76	-0.8
3,668,192	+		DDA3937_RS16055	0.76	+0.3
3,668,192	+		DDA3937_RS16055	0.76	-0.4
3,668,192	+		DDA3937_RS16055	0.76	-0.5
3,668,193	-		DDA3937_RS16055	0.76	+0.8
3,668,193	-		DDA3937_RS16055	0.76	-0.5
3,668,193	-		DDA3937_RS16055	0.76	-0.3
3,668,193	-		DDA3937_RS16055	0.76	-0.5
3,668,193	-		DDA3937_RS16055	0.76	-0.4
3,668,193	-		DDA3937_RS16055	0.76	-0.5
3,668,288	-		DDA3937_RS16055	0.89	+0.1
3,668,295	+		DDA3937_RS16055	0.90	+0.3
3,668,295	+		DDA3937_RS16055	0.90	-1.7
3,668,295	+		DDA3937_RS16055	0.90	+0.5
3,668,295	+		DDA3937_RS16055	0.90	+0.4
3,668,295	+		DDA3937_RS16055	0.90	-0.8
3,668,295	+		DDA3937_RS16055	0.90	-0.9
3,668,296	-				-0.8
3,668,296	-				+4.9
3,668,296	-				-1.0
3,668,296	-				-1.2
3,668,296	-				-0.6
3,668,326	+				-0.2
3,668,326	+				-1.5
3,668,336	+				-1.7
3,668,337	-				-1.5
3,668,337	-				-0.2
3,668,373	+				+0.3
3,668,374	-				+0.6
3,668,374	-				-2.2
3,668,376	+				-0.6
3,668,376	+				-2.6
3,668,377	-				-2.3
3,668,423	+				+0.2
3,668,423	+				+0.6
3,668,431	+				-0.2
3,668,451	+				+0.0
3,668,451	+				+0.2
3,668,451	+				+2.1
3,668,451	+				-0.2
3,668,452	-				-0.8
3,668,452	-				-0.0
3,668,452	-				-1.7
3,668,452	-				+0.2
3,668,452	-				-1.9
3,668,452	-				-0.7
3,668,522	-		DDA3937_RS16060	0.14	+1.6
3,668,536	-		DDA3937_RS16060	0.16	-0.0
3,668,580	-		DDA3937_RS16060	0.22	+0.1
3,668,629	+		DDA3937_RS16060	0.28	-1.5
3,668,630	-		DDA3937_RS16060	0.28	+0.2
3,668,675	+		DDA3937_RS16060	0.34	-1.2
3,668,675	+		DDA3937_RS16060	0.34	-1.7
3,668,675	+		DDA3937_RS16060	0.34	+0.2
3,668,675	+		DDA3937_RS16060	0.34	+2.3
3,668,675	+		DDA3937_RS16060	0.34	-2.2
3,668,675	+		DDA3937_RS16060	0.34	-0.2
3,668,675	+		DDA3937_RS16060	0.34	+0.8
3,668,675	+		DDA3937_RS16060	0.34	-2.5
3,668,675	+		DDA3937_RS16060	0.34	+1.7
3,668,675	+		DDA3937_RS16060	0.34	+0.6
3,668,675	+		DDA3937_RS16060	0.34	+0.4
3,668,675	+		DDA3937_RS16060	0.34	-1.0
3,668,676	-		DDA3937_RS16060	0.35	+0.8
3,668,676	-		DDA3937_RS16060	0.35	-0.4
3,668,676	-		DDA3937_RS16060	0.35	+0.5
3,668,676	-		DDA3937_RS16060	0.35	+0.1
3,668,676	-		DDA3937_RS16060	0.35	-0.1
3,668,676	-		DDA3937_RS16060	0.35	-0.3
3,668,676	-		DDA3937_RS16060	0.35	+0.3
3,668,676	-		DDA3937_RS16060	0.35	+0.4
3,668,676	-		DDA3937_RS16060	0.35	+0.5
3,668,676	-		DDA3937_RS16060	0.35	+0.3
3,668,676	-		DDA3937_RS16060	0.35	-1.2
3,668,676	-		DDA3937_RS16060	0.35	-1.8
3,668,676	-		DDA3937_RS16060	0.35	-1.7
3,668,676	-		DDA3937_RS16060	0.35	-3.1
3,668,680	+		DDA3937_RS16060	0.35	+0.6
3,668,680	+		DDA3937_RS16060	0.35	+0.2
3,668,680	+		DDA3937_RS16060	0.35	-1.1
3,668,680	+		DDA3937_RS16060	0.35	+0.9
3,668,680	+		DDA3937_RS16060	0.35	+0.7
3,668,680	+		DDA3937_RS16060	0.35	+0.6
3,668,681	-		DDA3937_RS16060	0.35	-0.6
3,668,681	-		DDA3937_RS16060	0.35	-0.8
3,668,757	-		DDA3937_RS16060	0.45	-0.7
3,668,757	-		DDA3937_RS16060	0.45	-3.0
3,668,764	-		DDA3937_RS16060	0.46	-0.8
3,668,764	-		DDA3937_RS16060	0.46	+0.5
3,668,768	+		DDA3937_RS16060	0.47	+0.1
3,668,769	-		DDA3937_RS16060	0.47	+0.3
3,668,769	-		DDA3937_RS16060	0.47	-0.0
3,668,769	-		DDA3937_RS16060	0.47	-0.2
3,668,769	-		DDA3937_RS16060	0.47	+0.5
3,668,778	+		DDA3937_RS16060	0.48	-2.4
3,668,778	+		DDA3937_RS16060	0.48	+2.6
3,668,779	-		DDA3937_RS16060	0.48	-0.8
3,668,779	-		DDA3937_RS16060	0.48	-0.8
3,668,795	+		DDA3937_RS16060	0.50	-0.0
3,668,796	-		DDA3937_RS16060	0.50	-2.0
3,668,801	-		DDA3937_RS16060	0.51	-1.2
3,668,834	+		DDA3937_RS16060	0.55	+1.0
3,668,835	-		DDA3937_RS16060	0.56	+0.6
3,668,835	-		DDA3937_RS16060	0.56	-1.5
3,668,896	+		DDA3937_RS16060	0.64	+1.6
3,668,896	+		DDA3937_RS16060	0.64	-1.8
3,668,896	+		DDA3937_RS16060	0.64	+0.8
3,668,896	+		DDA3937_RS16060	0.64	-0.2
3,668,896	+		DDA3937_RS16060	0.64	+0.5
3,668,896	+		DDA3937_RS16060	0.64	-0.7
3,668,896	+		DDA3937_RS16060	0.64	+0.7
3,668,896	+		DDA3937_RS16060	0.64	-0.1
3,668,896	+		DDA3937_RS16060	0.64	+1.0
3,668,897	-		DDA3937_RS16060	0.64	-1.2
3,668,897	-		DDA3937_RS16060	0.64	-1.5
3,668,897	-		DDA3937_RS16060	0.64	+0.3
3,668,897	-		DDA3937_RS16060	0.64	-1.1
3,668,897	-		DDA3937_RS16060	0.64	-0.1
3,668,897	-		DDA3937_RS16060	0.64	+0.8
3,668,914	-				+1.9
3,668,914	-		DDA3937_RS16060	0.66	+1.0
3,668,914	-		DDA3937_RS16060	0.66	+0.1
3,668,920	+		DDA3937_RS16060	0.67	-0.1
3,668,976	+		DDA3937_RS16060	0.74	-0.3
3,668,976	+		DDA3937_RS16060	0.74	-0.7
3,668,977	-		DDA3937_RS16060	0.74	+1.6
3,669,052	+		DDA3937_RS16060	0.84	-0.3
3,669,053	-		DDA3937_RS16060	0.84	-1.5
3,669,145	+				-1.1
3,669,145	+				-3.1
3,669,220	+				-1.9
3,669,238	+				+0.0
3,669,238	+				-1.4
3,669,238	+				-1.7
3,669,238	+				-1.2
3,669,238	+				+0.2
3,669,239	-				-1.7
3,669,239	-				-1.0
3,669,239	-				-0.7
3,669,239	-				-2.0
3,669,240	+				-0.4
3,669,240	+				-0.4
3,669,240	+				+0.8
3,669,240	+				-1.2
3,669,240	+				+0.1
3,669,241	-				-2.1
3,669,241	-				-2.0
3,669,249	+				-0.2
3,669,539	+		DDA3937_RS16065	0.21	+1.1
3,669,559	+		DDA3937_RS16065	0.23	-1.8
3,669,560	-		DDA3937_RS16065	0.23	-1.2
3,669,565	+		DDA3937_RS16065	0.23	-0.4
3,669,594	+		DDA3937_RS16065	0.25	+0.0
3,669,594	+		DDA3937_RS16065	0.25	-1.7
3,669,594	+		DDA3937_RS16065	0.25	+0.2
3,669,594	+		DDA3937_RS16065	0.25	-1.0
3,669,674	+				+1.0
3,669,737	-		DDA3937_RS16065	0.35	-1.8
3,669,931	+		DDA3937_RS16065	0.49	-1.0
3,669,946	+		DDA3937_RS16065	0.50	-0.2
3,669,946	+		DDA3937_RS16065	0.50	-0.2
3,669,946	+		DDA3937_RS16065	0.50	-1.5
3,669,947	-		DDA3937_RS16065	0.50	+1.3
3,670,121	-		DDA3937_RS16065	0.63	+0.1
3,670,132	+		DDA3937_RS16065	0.64	-1.7