Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15615

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,574,526	-		DDA3937_RS15610	0.56	-1.3
3,574,545	-		DDA3937_RS15610	0.57	+0.3
3,574,628	-		DDA3937_RS15610	0.64	+0.9
3,574,633	+		DDA3937_RS15610	0.65	-1.3
3,574,633	+		DDA3937_RS15610	0.65	+1.5
3,574,633	+		DDA3937_RS15610	0.65	-0.4
3,574,633	+		DDA3937_RS15610	0.65	+0.1
3,574,634	-		DDA3937_RS15610	0.65	+0.6
3,574,634	-		DDA3937_RS15610	0.65	-0.9
3,574,634	-		DDA3937_RS15610	0.65	+0.2
3,574,634	-		DDA3937_RS15610	0.65	-0.1
3,574,695	+		DDA3937_RS15610	0.70	-0.7
3,574,743	+		DDA3937_RS15610	0.74	-0.9
3,574,744	-		DDA3937_RS15610	0.74	+1.0
3,574,744	-		DDA3937_RS15610	0.74	-0.5
3,574,757	+		DDA3937_RS15610	0.75	-1.2
3,574,758	-		DDA3937_RS15610	0.75	+1.5
3,574,758	-		DDA3937_RS15610	0.75	-0.5
3,574,770	-		DDA3937_RS15610	0.76	+0.7
3,574,800	+		DDA3937_RS15610	0.79	-1.3
3,574,800	+		DDA3937_RS15610	0.79	-0.5
3,574,801	-		DDA3937_RS15610	0.79	+0.1
3,574,801	-		DDA3937_RS15610	0.79	+0.3
3,574,952	+				-1.5
3,574,970	+				-0.7
3,574,971	-				-0.3
3,574,976	+				+0.7
3,574,976	+				-1.4
3,575,096	-				-0.4
3,575,096	-				-0.3
3,575,226	+				+0.3
3,575,226	+				+1.0
3,575,227	-				-1.5
3,575,516	+				+0.9
3,575,516	+				+0.8
3,575,516	+				-0.7
3,575,516	+				+1.5
3,575,516	+				-0.5
3,575,516	+				+0.8
3,575,516	+				-0.3
3,575,516	+				-1.3
3,575,516	+				+0.9
3,575,516	+				+1.5
3,575,516	+				-1.2
3,575,516	+				+0.2
3,575,517	-				+0.1
3,575,517	-				-0.0
3,575,517	-				-2.3
3,575,517	-				-0.2
3,575,517	-				-0.5
3,575,836	-		DDA3937_RS15615	0.27	-0.7
3,575,836	-		DDA3937_RS15615	0.27	-0.0
3,575,979	+		DDA3937_RS15615	0.39	+1.4
3,576,012	+		DDA3937_RS15615	0.42	-1.8
3,576,012	+		DDA3937_RS15615	0.42	+0.8
3,576,013	-		DDA3937_RS15615	0.42	+0.9
3,576,126	+		DDA3937_RS15615	0.51	+0.6
3,576,126	+		DDA3937_RS15615	0.51	-1.9
3,576,126	+		DDA3937_RS15615	0.51	+1.3
3,576,126	+		DDA3937_RS15615	0.51	-0.2
3,576,126	+		DDA3937_RS15615	0.51	-1.3
3,576,126	+		DDA3937_RS15615	0.51	-1.5
3,576,126	+		DDA3937_RS15615	0.51	+0.9
3,576,126	+		DDA3937_RS15615	0.51	+0.9
3,576,127	-		DDA3937_RS15615	0.51	-0.2
3,576,127	-		DDA3937_RS15615	0.51	+0.8
3,576,127	-		DDA3937_RS15615	0.51	-0.9
3,576,127	-		DDA3937_RS15615	0.51	+1.6
3,576,127	-		DDA3937_RS15615	0.51	-0.3
3,576,127	-		DDA3937_RS15615	0.51	-0.8
3,576,127	-		DDA3937_RS15615	0.51	-2.7
3,576,150	+		DDA3937_RS15615	0.53	-0.6
3,576,150	+		DDA3937_RS15615	0.53	+0.2
3,576,151	-		DDA3937_RS15615	0.53	+0.7
3,576,151	-		DDA3937_RS15615	0.53	-0.7
3,576,151	-		DDA3937_RS15615	0.53	-0.9
3,576,176	+		DDA3937_RS15615	0.55	-0.6
3,576,195	+		DDA3937_RS15615	0.57	-0.4
3,576,196	-		DDA3937_RS15615	0.57	-0.3
3,576,196	-				-0.3
3,576,210	-		DDA3937_RS15615	0.58	+0.9
3,576,210	-		DDA3937_RS15615	0.58	+0.8
3,576,213	-		DDA3937_RS15615	0.59	+1.0
3,576,346	+		DDA3937_RS15615	0.69	-0.1
3,576,346	+		DDA3937_RS15615	0.69	-0.9
3,576,369	+		DDA3937_RS15615	0.71	-1.0
3,576,370	-		DDA3937_RS15615	0.71	-0.9
3,576,370	-		DDA3937_RS15615	0.71	-0.4
3,576,370	-		DDA3937_RS15615	0.71	-0.9
3,576,370	-		DDA3937_RS15615	0.71	-1.4
3,576,370	-		DDA3937_RS15615	0.71	-2.0
3,576,381	+		DDA3937_RS15615	0.72	+0.3
3,576,381	+		DDA3937_RS15615	0.72	-0.7
3,576,382	-		DDA3937_RS15615	0.72	+0.3
3,576,408	+		DDA3937_RS15615	0.75	+0.7
3,576,483	-		DDA3937_RS15615	0.81	-1.9
3,576,483	-		DDA3937_RS15615	0.81	-1.5
3,576,537	-		DDA3937_RS15615	0.85	+0.2
3,576,557	+		DDA3937_RS15615	0.87	-0.2
3,576,585	+		DDA3937_RS15615	0.89	+0.5
3,576,586	-		DDA3937_RS15615	0.89	-0.3
3,576,586	-		DDA3937_RS15615	0.89	-0.1
3,576,586	-		DDA3937_RS15615	0.89	-0.7
3,576,621	+				-0.6
3,576,621	+				+0.3
3,576,622	-				-0.5
3,576,645	+				-0.7
3,576,645	+				-1.0
3,576,646	-				-1.3
3,576,731	+				+0.0
3,576,783	+				-1.3
3,576,784	-				+0.9
3,576,784	-				-2.9
3,576,817	-				-1.2
3,576,894	-				-0.1
3,576,903	+				+0.7
3,576,904	-				-0.4
3,576,904	-				-0.8
3,576,907	-				-1.2
3,576,920	+				-0.3
3,576,931	+				-0.7
3,576,936	-				+0.4
3,576,989	+				-1.6
3,576,996	-				+0.3
3,576,996	-				+1.2
3,576,998	-				-0.8
3,577,065	-				-0.4
3,577,069	-				+1.3
3,577,217	+				-1.9
3,577,235	+				+1.0
3,577,235	+				+0.4
3,577,261	+				-1.6
3,577,262	-				-1.0
3,577,295	+				+1.3
3,577,296	-				-1.0
3,577,296	-				-0.1
3,577,428	+		DDA3937_RS15620	0.16	-1.1
3,577,428	+		DDA3937_RS15620	0.16	+0.2
3,577,429	-		DDA3937_RS15620	0.16	+1.6
3,577,429	-		DDA3937_RS15620	0.16	+1.3
3,577,429	-		DDA3937_RS15620	0.16	-0.5
3,577,455	-		DDA3937_RS15620	0.19	+0.6
3,577,537	-		DDA3937_RS15620	0.26	+1.1
3,577,658	+		DDA3937_RS15620	0.36	-0.1
3,577,658	+		DDA3937_RS15620	0.36	-2.3
3,577,659	-		DDA3937_RS15620	0.36	-0.3
3,577,680	+		DDA3937_RS15620	0.38	+0.7
3,577,680	+		DDA3937_RS15620	0.38	+0.4
3,577,680	+		DDA3937_RS15620	0.38	+0.5
3,577,680	+		DDA3937_RS15620	0.38	-1.0
3,577,680	+		DDA3937_RS15620	0.38	+0.6
3,577,680	+		DDA3937_RS15620	0.38	-0.3
3,577,681	-		DDA3937_RS15620	0.38	-0.0
3,577,681	-		DDA3937_RS15620	0.38	-1.0
3,577,702	+		DDA3937_RS15620	0.40	+4.2
3,577,702	+		DDA3937_RS15620	0.40	-0.4
3,577,702	+		DDA3937_RS15620	0.40	+0.3
3,577,702	+		DDA3937_RS15620	0.40	-0.6
3,577,703	-		DDA3937_RS15620	0.40	-0.7
3,577,703	-		DDA3937_RS15620	0.40	-1.0
3,577,703	-		DDA3937_RS15620	0.40	+0.4
3,577,703	-		DDA3937_RS15620	0.40	-0.1
3,577,714	-		DDA3937_RS15620	0.41	+1.5