Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15425

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,536,242	-		DDA3937_RS15420	0.45	-0.3
3,536,340	+		DDA3937_RS15420	0.52	-2.2
3,536,406	+		DDA3937_RS15420	0.57	-2.2
3,536,406	+		DDA3937_RS15420	0.57	-2.5
3,536,422	-		DDA3937_RS15420	0.58	-2.5
3,536,446	+		DDA3937_RS15420	0.59	-2.0
3,536,643	+		DDA3937_RS15420	0.73	-1.8
3,536,814	+		DDA3937_RS15420	0.85	-0.9
3,536,815	-		DDA3937_RS15420	0.85	-2.3
3,536,890	-		DDA3937_RS15420	0.90	-2.3
3,536,946	+				-2.2
3,536,947	-				-1.3
3,536,947	-				-2.3
3,537,034	+				-3.0
3,537,034	+				-2.2
3,537,034	+				-2.3
3,537,034	+				-1.5
3,537,034	+				-0.7
3,537,035	-				-0.7
3,537,035	-				-2.0
3,537,035	-				-1.9
3,537,035	-				+0.3
3,537,035	-				-2.9
3,537,035	-				-2.5
3,537,045	+				-2.8
3,537,045	+				-1.5
3,537,046	-				-2.4
3,537,046	-				-1.5
3,537,071	+				-1.0
3,537,071	+				-1.6
3,537,076	-				-1.3
3,537,094	+				-3.1
3,537,094	+				-1.3
3,537,095	-				+0.4
3,537,095	-				-0.1
3,537,095	-				-2.4
3,537,095	-				-0.8
3,537,166	+				-2.0
3,537,166	+				-2.5
3,537,166	+				-0.4
3,537,166	+				-0.3
3,537,167	-				-0.3
3,537,176	+				-1.0
3,537,176	+				-0.3
3,537,177	-				-0.4
3,537,239	-				-0.4
3,537,239	-				-2.5
3,537,239	-				-1.1
3,537,239	-				+1.3
3,537,242	+				-0.6
3,537,242	+				-1.0
3,537,242	+				+1.3
3,537,268	+				+0.3
3,537,268	+				-0.2
3,537,354	+		DDA3937_RS15425	0.10	-1.2
3,537,354	+		DDA3937_RS15425	0.10	+1.5
3,537,428	+		DDA3937_RS15425	0.16	-0.0
3,537,429	-		DDA3937_RS15425	0.16	-0.2
3,537,477	+		DDA3937_RS15425	0.19	-0.2
3,537,603	+		DDA3937_RS15425	0.28	-0.2
3,537,603	+		DDA3937_RS15425	0.28	+0.4
3,537,603	+		DDA3937_RS15425	0.28	+0.5
3,537,603	+		DDA3937_RS15425	0.28	+0.0
3,537,603	+		DDA3937_RS15425	0.28	-2.1
3,537,603	+		DDA3937_RS15425	0.28	-0.8
3,537,603	+		DDA3937_RS15425	0.28	+0.7
3,537,604	-		DDA3937_RS15425	0.28	-2.9
3,537,604	-		DDA3937_RS15425	0.28	-0.2
3,537,604	-		DDA3937_RS15425	0.28	-0.3
3,537,604	-		DDA3937_RS15425	0.28	+0.8
3,537,604	-		DDA3937_RS15425	0.28	-0.8
3,537,604	-		DDA3937_RS15425	0.28	+0.7
3,537,604	-		DDA3937_RS15425	0.28	-2.4
3,537,647	+		DDA3937_RS15425	0.31	+1.0
3,537,648	-		DDA3937_RS15425	0.32	-2.0
3,537,648	-		DDA3937_RS15425	0.32	-2.3
3,537,721	+		DDA3937_RS15425	0.37	+0.7
3,537,721	+		DDA3937_RS15425	0.37	-2.9
3,537,726	+		DDA3937_RS15425	0.37	-1.5
3,537,726	+		DDA3937_RS15425	0.37	+0.2
3,537,784	+		DDA3937_RS15425	0.41	-1.3
3,537,784	+		DDA3937_RS15425	0.41	-0.1
3,537,785	-		DDA3937_RS15425	0.41	-2.5
3,537,884	+		DDA3937_RS15425	0.49	+0.1
3,537,884	+		DDA3937_RS15425	0.49	-0.3
3,538,071	+		DDA3937_RS15425	0.62	-0.2
3,538,071	+		DDA3937_RS15425	0.62	-0.3
3,538,071	+		DDA3937_RS15425	0.62	+1.1
3,538,072	-		DDA3937_RS15425	0.62	-1.5
3,538,072	-		DDA3937_RS15425	0.62	+2.3
3,538,072	-		DDA3937_RS15425	0.62	-3.0
3,538,072	-		DDA3937_RS15425	0.62	-2.4
3,538,075	-		DDA3937_RS15425	0.62	-1.2
3,538,075	-		DDA3937_RS15425	0.62	-2.7
3,538,075	-		DDA3937_RS15425	0.62	-0.6
3,538,303	+		DDA3937_RS15425	0.79	-0.3
3,538,303	+		DDA3937_RS15425	0.79	+0.7
3,538,303	+		DDA3937_RS15425	0.79	-0.1
3,538,303	+		DDA3937_RS15425	0.79	+0.0
3,538,303	+		DDA3937_RS15425	0.79	+0.5
3,538,303	+		DDA3937_RS15425	0.79	-1.6
3,538,303	+		DDA3937_RS15425	0.79	-1.3
3,538,303	+		DDA3937_RS15425	0.79	-0.8
3,538,303	+		DDA3937_RS15425	0.79	-0.7
3,538,304	-		DDA3937_RS15425	0.79	-0.3
3,538,304	-		DDA3937_RS15425	0.79	-2.6
3,538,304	-		DDA3937_RS15425	0.79	-3.7
3,538,304	-		DDA3937_RS15425	0.79	-0.3
3,538,304	-		DDA3937_RS15425	0.79	-0.5
3,538,349	+		DDA3937_RS15425	0.82	-0.8
3,538,350	-		DDA3937_RS15425	0.82	-1.0
3,538,495	+				+1.3
3,538,546	+				-0.4
3,538,559	+				+0.1
3,538,559	+				+0.5
3,538,603	+				+1.7
3,538,604	-				-0.6
3,538,608	+				+0.0
3,538,608	+				+0.3
3,538,608	+				+0.8
3,538,610	+				-0.0
3,538,610	+				-0.5
3,538,610	+				+1.0
3,538,610	+				+0.7
3,538,610	+				-0.0
3,538,611	-				-0.4
3,538,611	-				-1.3
3,538,611	-				-0.9
3,538,611	-				-1.1
3,538,611	-				+0.8
3,538,611	-				-2.7
3,538,614	+				+2.1
3,538,614	+				-0.7
3,538,615	-				+1.3
3,538,624	+				-0.7
3,538,624	+				-2.4
3,538,624	+				+0.3
3,538,624	+				+0.1
3,538,625	-				-0.1
3,538,634	-				-2.2
3,538,634	-				-0.7
3,538,634	-				-2.4
3,538,647	+				+0.6
3,538,647	+				-1.3
3,538,647	+				+0.4
3,538,648	-				-1.5
3,538,648	-				-0.8
3,538,648	-				+0.2
3,538,648	-				+0.5
3,538,650	+				-1.0
3,538,651	-				-1.3
3,538,651	-				-0.8
3,538,651	-				-1.5
3,538,651	-				-0.1
3,538,676	+				+0.2
3,538,676	+				+0.7
3,538,689	+				+1.9
3,538,690	-				-1.3
3,538,690	-				-1.4
3,538,690	-				-0.5
3,538,690	-				-1.0
3,538,690	-				+0.8
3,538,720	+				-2.7
3,538,721	-				-1.8
3,538,721	-				-1.0
3,538,722	+				-1.0
3,538,722	+				+1.0
3,538,722	+				-0.8
3,538,722	+				-2.5
3,538,722	+				+0.1
3,538,722	+				-1.9
3,538,722	+				+0.0
3,538,723	-				-1.0
3,538,723	-				-0.7
3,538,737	+				+0.7
3,538,859	+		DDA3937_RS15430	0.16	+0.6
3,538,873	+		DDA3937_RS15430	0.17	-0.3
3,538,963	+				+0.6
3,538,964	-		DDA3937_RS15430	0.26	-0.5
3,538,969	+		DDA3937_RS15430	0.27	-1.3
3,538,969	+		DDA3937_RS15430	0.27	-0.7
3,538,969	+		DDA3937_RS15430	0.27	-1.7
3,538,969	+		DDA3937_RS15430	0.27	+1.7
3,538,970	-		DDA3937_RS15430	0.27	+0.2
3,538,970	-		DDA3937_RS15430	0.27	-1.0
3,538,970	-		DDA3937_RS15430	0.27	-1.1
3,538,980	+		DDA3937_RS15430	0.28	-0.7
3,538,980	+		DDA3937_RS15430	0.28	+0.1
3,538,980	+		DDA3937_RS15430	0.28	-1.8
3,538,980	+		DDA3937_RS15430	0.28	-0.1
3,538,980	+		DDA3937_RS15430	0.28	-0.6
3,538,981	-		DDA3937_RS15430	0.28	+0.1
3,538,981	-		DDA3937_RS15430	0.28	-0.4
3,538,984	+		DDA3937_RS15430	0.28	-0.9
3,538,984	+		DDA3937_RS15430	0.28	-0.7
3,538,984	+		DDA3937_RS15430	0.28	-0.8
3,538,985	-		DDA3937_RS15430	0.28	+0.8
3,538,985	-		DDA3937_RS15430	0.28	-0.4
3,539,028	+		DDA3937_RS15430	0.32	-1.8
3,539,203	-				+0.6
3,539,203	-		DDA3937_RS15430	0.49	-0.7
3,539,212	+		DDA3937_RS15430	0.50	+1.7
3,539,212	+				-1.0
3,539,213	-		DDA3937_RS15430	0.50	-0.5
3,539,278	+		DDA3937_RS15430	0.56	-2.6
3,539,279	-		DDA3937_RS15430	0.56	+0.1
3,539,279	-		DDA3937_RS15430	0.56	-3.3
3,539,282	-		DDA3937_RS15430	0.56	-0.9
3,539,389	+		DDA3937_RS15430	0.67	-0.3
3,539,471	+		DDA3937_RS15430	0.74	-1.5
3,539,506	+		DDA3937_RS15430	0.78	-1.0
3,539,507	-		DDA3937_RS15430	0.78	+1.0
3,539,556	+		DDA3937_RS15430	0.82	-1.4
3,539,556	+		DDA3937_RS15430	0.82	-0.3