Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14555

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,331,946	+		DDA3937_RS14550	0.44	-0.4
3,331,981	+		DDA3937_RS14550	0.46	+0.3
3,331,981	+		DDA3937_RS14550	0.46	+0.8
3,331,981	+		DDA3937_RS14550	0.46	-2.1
3,331,982	-		DDA3937_RS14550	0.46	+0.0
3,331,982	-		DDA3937_RS14550	0.46	-1.1
3,331,982	-		DDA3937_RS14550	0.46	+0.3
3,331,982	-		DDA3937_RS14550	0.46	-0.7
3,332,291	+		DDA3937_RS14550	0.68	+0.1
3,332,292	-		DDA3937_RS14550	0.68	-0.6
3,332,427	+		DDA3937_RS14550	0.78	+2.3
3,332,428	-		DDA3937_RS14550	0.78	-0.6
3,332,532	-		DDA3937_RS14550	0.85	+0.8
3,332,756	-				+0.1
3,332,853	+				+0.3
3,332,853	+				+1.3
3,332,854	-				-2.6
3,332,907	+				-0.1
3,332,909	+				+1.2
3,332,985	+				-2.4
3,332,986	-				-2.1
3,333,010	-				-1.3
3,333,212	+		DDA3937_RS14555	0.31	-0.5
3,333,212	+		DDA3937_RS14555	0.31	+0.7
3,333,213	-		DDA3937_RS14555	0.31	+1.2
3,333,314	-		DDA3937_RS14555	0.42	-2.3
3,333,314	-		DDA3937_RS14555	0.42	+1.4
3,333,346	+		DDA3937_RS14555	0.46	-1.6
3,333,356	+		DDA3937_RS14555	0.47	-0.2
3,333,356	+		DDA3937_RS14555	0.47	+0.3
3,333,356	+		DDA3937_RS14555	0.47	-0.4
3,333,357	-		DDA3937_RS14555	0.47	+0.8
3,333,511	+		DDA3937_RS14555	0.64	-1.1
3,333,511	+		DDA3937_RS14555	0.64	+0.5
3,333,512	-		DDA3937_RS14555	0.64	-1.1
3,333,611	+		DDA3937_RS14555	0.75	-0.0
3,333,612	-		DDA3937_RS14555	0.75	-0.6
3,333,620	+		DDA3937_RS14555	0.76	+0.2
3,333,620	+		DDA3937_RS14555	0.76	+0.9
3,333,620	+		DDA3937_RS14555	0.76	-0.6
3,333,620	+		DDA3937_RS14555	0.76	-1.5
3,333,620	+		DDA3937_RS14555	0.76	+0.2
3,333,621	-		DDA3937_RS14555	0.76	+1.0
3,333,621	-		DDA3937_RS14555	0.76	-0.7
3,333,658	+		DDA3937_RS14555	0.81	-0.6
3,333,658	+		DDA3937_RS14555	0.81	+0.7
3,333,658	+		DDA3937_RS14555	0.81	-1.1
3,333,659	-		DDA3937_RS14555	0.81	+0.3
3,333,662	+		DDA3937_RS14555	0.81	+3.1
3,333,662	+		DDA3937_RS14555	0.81	+0.7
3,333,662	+		DDA3937_RS14555	0.81	-0.8
3,333,662	+		DDA3937_RS14555	0.81	-0.1
3,333,663	-		DDA3937_RS14555	0.81	-1.4
3,333,663	-		DDA3937_RS14555	0.81	+0.6
3,333,663	-		DDA3937_RS14555	0.81	+0.6
3,333,663	-		DDA3937_RS14555	0.81	-1.4
3,333,663	-		DDA3937_RS14555	0.81	-0.3
3,333,663	-		DDA3937_RS14555	0.81	-1.3
3,333,663	-		DDA3937_RS14555	0.81	-0.2
3,333,674	-		DDA3937_RS14555	0.82	-2.4
3,333,674	-		DDA3937_RS14555	0.82	+0.1
3,333,674	-		DDA3937_RS14555	0.82	+0.1
3,333,675	+		DDA3937_RS14555	0.82	-1.0
3,333,675	+		DDA3937_RS14555	0.82	-0.3
3,333,736	+		DDA3937_RS14555	0.89	-0.2
3,333,736	+		DDA3937_RS14555	0.89	-0.5
3,333,737	-		DDA3937_RS14555	0.89	-1.4
3,333,737	-		DDA3937_RS14555	0.89	+0.9
3,333,737	-		DDA3937_RS14555	0.89	-0.4
3,333,820	+				-2.4
3,333,829	+				+0.1
3,333,906	+				-1.7
3,333,906	+				-1.1
3,333,906	+				+0.2
3,333,906	+				-0.3
3,333,906	+				+1.2
3,333,906	+				-1.8
3,333,906	+				-1.4
3,333,906	+				-1.1
3,333,906	+				+0.3
3,333,907	-				-1.4
3,333,907	-				-0.7
3,333,907	-				-0.6
3,333,907	-				-0.4
3,333,907	-				-0.4
3,333,907	-				+0.1
3,333,907	-				-2.0
3,333,907	-				+1.2
3,333,929	+				+0.2
3,333,930	-				-0.3
3,333,930	-				-0.7
3,333,930	-				+0.8
3,333,940	+				-1.8
3,333,940	+				-0.3
3,333,944	+				+0.1
3,333,944	+				+2.8
3,333,945	-				+0.1
3,333,945	-				+0.6
3,333,986	-				+1.5
3,333,996	+				-3.3
3,334,421	+		DDA3937_RS14565	0.20	+0.4
3,334,422	-		DDA3937_RS14565	0.20	-0.2
3,334,422	-		DDA3937_RS14565	0.20	+2.8
3,334,422	-		DDA3937_RS14565	0.20	-1.0
3,334,422	-		DDA3937_RS14565	0.20	-0.5
3,334,422	-		DDA3937_RS14565	0.20	-3.5
3,334,506	+		DDA3937_RS14565	0.35	-1.7
3,334,507	-		DDA3937_RS14565	0.35	-0.6
3,334,613	+		DDA3937_RS14565	0.54	-0.1
3,334,613	+		DDA3937_RS14565	0.54	+0.3
3,334,614	-		DDA3937_RS14565	0.54	+0.2
3,334,694	+		DDA3937_RS14565	0.68	+0.0
3,334,694	+		DDA3937_RS14565	0.68	+1.1
3,334,694	+		DDA3937_RS14565	0.68	-1.8
3,334,694	+		DDA3937_RS14565	0.68	-1.1
3,334,694	+		DDA3937_RS14565	0.68	+1.2
3,334,695	-		DDA3937_RS14565	0.68	-0.3
3,334,695	-		DDA3937_RS14565	0.68	+0.1
3,334,695	-		DDA3937_RS14565	0.68	-0.5
3,334,695	-		DDA3937_RS14565	0.68	-0.3
3,334,725	-		DDA3937_RS14565	0.74	-0.9
3,334,751	+		DDA3937_RS14565	0.78	-0.6
3,334,751	+		DDA3937_RS14565	0.78	-1.1
3,334,751	+		DDA3937_RS14565	0.78	-0.4
3,334,752	-		DDA3937_RS14565	0.79	-0.2
3,334,755	+		DDA3937_RS14565	0.79	-0.7
3,334,755	+		DDA3937_RS14565	0.79	-0.9
3,334,755	+		DDA3937_RS14565	0.79	+0.6
3,334,755	+		DDA3937_RS14565	0.79	+1.2
3,334,755	+		DDA3937_RS14565	0.79	+1.2
3,334,755	+		DDA3937_RS14565	0.79	-1.6
3,334,756	-		DDA3937_RS14565	0.79	-0.1
3,334,756	-		DDA3937_RS14565	0.79	+0.2
3,334,756	-		DDA3937_RS14565	0.79	-1.4
3,334,790	+		DDA3937_RS14565	0.85	+0.2
3,334,790	+		DDA3937_RS14565	0.85	-0.4
3,334,790	+		DDA3937_RS14565	0.85	+0.4
3,334,790	+		DDA3937_RS14565	0.85	+0.2
3,334,790	+				-0.4
3,334,791	-		DDA3937_RS14565	0.85	-0.2
3,334,791	-		DDA3937_RS14565	0.85	+0.3
3,334,791	-				+2.8
3,334,791	-		DDA3937_RS14565	0.85	+0.2
3,334,791	-		DDA3937_RS14565	0.85	+0.3
3,334,801	-		DDA3937_RS14565	0.87	-0.4