Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14170

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,243,137	-				+0.7
3,243,165	+				-1.3
3,243,178	-				-0.2
3,243,178	-				+0.5
3,243,202	+				+1.2
3,243,202	+				-1.0
3,243,202	+				+0.2
3,243,203	-				+0.8
3,243,229	+				+0.5
3,243,229	-				+0.5
3,243,230	-				+1.2
3,243,230	-				-1.8
3,243,230	-				-1.4
3,243,230	-				+1.8
3,243,233	+				-0.9
3,243,234	-				-0.8
3,243,234	-				-1.8
3,243,234	-				-1.1
3,243,234	-				+0.1
3,243,241	-				-0.7
3,243,243	-				+0.0
3,243,279	-				-0.2
3,243,295	+				-1.4
3,243,295	+				-0.1
3,243,295	+				-1.6
3,243,295	+				+1.0
3,243,295	+				+0.6
3,243,295	+				-0.2
3,243,296	-				-0.9
3,243,296	-				-2.2
3,243,296	-				-2.1
3,243,374	+				-3.2
3,243,374	+				+0.0
3,243,374	+				+0.7
3,243,374	+				+0.0
3,243,374	+				-0.2
3,243,374	+				-0.3
3,243,374	+				-1.4
3,243,374	+				-0.6
3,243,374	+				-2.0
3,243,374	+				-0.8
3,243,374	+				-0.4
3,243,374	+				+0.1
3,243,375	-				-0.3
3,243,375	-				-0.2
3,243,375	-				-2.4
3,243,375	-				-0.3
3,243,375	-				+1.0
3,243,375	-				+0.9
3,243,378	+				-1.7
3,243,378	+				+1.1
3,243,378	+				-0.7
3,243,378	+				-0.4
3,243,379	-				+1.6
3,243,379	-				-0.3
3,243,379	-				+0.4
3,243,379	-				-0.7
3,243,379	-				+0.6
3,243,379	-				+2.3
3,243,437	+				+1.0
3,243,438	-				-0.1
3,243,438	-				+0.8
3,243,438	-				-0.8
3,243,441	+				-0.9
3,243,448	+				+0.9
3,243,449	-				+0.3
3,243,449	-				-1.4
3,243,453	-				+1.6
3,243,453	-				-0.1
3,243,453	-				-1.4
3,243,456	+				+0.7
3,243,456	+				+1.8
3,243,456	+				-2.6
3,243,457	-				-0.3
3,243,457	-				-0.8
3,243,457	-				-1.1
3,243,460	+				+0.4
3,243,460	+				+0.9
3,243,461	-				+1.2
3,243,461	-				-0.2
3,243,703	+		DDA3937_RS14165	0.36	+0.4
3,243,704	-		DDA3937_RS14165	0.36	+0.3
3,243,704	-		DDA3937_RS14165	0.36	-1.6
3,243,704	-		DDA3937_RS14165	0.36	-3.3
3,243,788	+		DDA3937_RS14165	0.49	+2.3
3,243,789	-		DDA3937_RS14165	0.50	-0.5
3,243,790	+		DDA3937_RS14165	0.50	-0.1
3,243,791	-		DDA3937_RS14165	0.50	-0.6
3,243,800	+		DDA3937_RS14165	0.51	+1.2
3,243,800	+		DDA3937_RS14165	0.51	-3.2
3,243,830	+				+0.2
3,243,830	+		DDA3937_RS14165	0.56	+0.4
3,243,830	+		DDA3937_RS14165	0.56	+0.6
3,243,831	-		DDA3937_RS14165	0.56	-1.3
3,243,875	+		DDA3937_RS14165	0.63	+0.2
3,243,875	+		DDA3937_RS14165	0.63	+0.2
3,243,876	-		DDA3937_RS14165	0.63	-0.6
3,243,876	-		DDA3937_RS14165	0.63	+2.0
3,243,876	-		DDA3937_RS14165	0.63	-0.7
3,243,876	-		DDA3937_RS14165	0.63	+1.9
3,243,892	-		DDA3937_RS14165	0.66	+1.2
3,244,061	+				+0.7
3,244,147	+				+0.6
3,244,180	+				-0.2
3,244,180	+				+0.2
3,244,180	+				+0.1
3,244,234	-		DDA3937_RS14170	0.15	-0.3
3,244,289	+		DDA3937_RS14170	0.21	+0.5
3,244,289	+		DDA3937_RS14170	0.21	-1.6
3,244,290	-		DDA3937_RS14170	0.21	+1.3
3,244,290	-		DDA3937_RS14170	0.21	-1.2
3,244,290	-		DDA3937_RS14170	0.21	+2.1
3,244,322	+		DDA3937_RS14170	0.25	-1.6
3,244,322	+		DDA3937_RS14170	0.25	-0.8
3,244,322	+		DDA3937_RS14170	0.25	+1.4
3,244,322	+		DDA3937_RS14170	0.25	-1.6
3,244,322	+		DDA3937_RS14170	0.25	-2.8
3,244,322	+		DDA3937_RS14170	0.25	-2.3
3,244,323	-		DDA3937_RS14170	0.25	+0.2
3,244,323	-		DDA3937_RS14170	0.25	+0.2
3,244,323	-		DDA3937_RS14170	0.25	+0.8
3,244,323	-		DDA3937_RS14170	0.25	-0.1
3,244,323	-		DDA3937_RS14170	0.25	-1.2
3,244,323	-		DDA3937_RS14170	0.25	-0.5
3,244,323	-		DDA3937_RS14170	0.25	-0.8
3,244,323	-		DDA3937_RS14170	0.25	-2.4
3,244,323	-		DDA3937_RS14170	0.25	+3.0
3,244,323	-		DDA3937_RS14170	0.25	-0.7
3,244,327	+		DDA3937_RS14170	0.26	-0.1
3,244,327	+				-0.8
3,244,327	+		DDA3937_RS14170	0.26	+1.3
3,244,327	+		DDA3937_RS14170	0.26	+1.6
3,244,327	+		DDA3937_RS14170	0.26	-1.2
3,244,328	-		DDA3937_RS14170	0.26	-0.3
3,244,328	-		DDA3937_RS14170	0.26	-0.2
3,244,328	-		DDA3937_RS14170	0.26	-1.4
3,244,328	-		DDA3937_RS14170	0.26	-0.8
3,244,328	-		DDA3937_RS14170	0.26	+2.0
3,244,328	-		DDA3937_RS14170	0.26	+0.4
3,244,328	-		DDA3937_RS14170	0.26	-2.7
3,244,328	-		DDA3937_RS14170	0.26	-0.5
3,244,328	-		DDA3937_RS14170	0.26	-1.7
3,244,358	+		DDA3937_RS14170	0.29	-2.0
3,244,358	+		DDA3937_RS14170	0.29	+1.4
3,244,359	-		DDA3937_RS14170	0.29	+1.2
3,244,526	+		DDA3937_RS14170	0.48	+0.2
3,244,526	+		DDA3937_RS14170	0.48	-0.1
3,244,526	+		DDA3937_RS14170	0.48	-1.2
3,244,526	+		DDA3937_RS14170	0.48	-0.6
3,244,526	+		DDA3937_RS14170	0.48	+1.0
3,244,527	-		DDA3937_RS14170	0.48	-0.7
3,244,527	-		DDA3937_RS14170	0.48	-0.0
3,244,527	-		DDA3937_RS14170	0.48	-1.6
3,244,698	+		DDA3937_RS14170	0.67	-0.4
3,244,698	+		DDA3937_RS14170	0.67	+0.8
3,244,698	+		DDA3937_RS14170	0.67	-1.0
3,244,699	-		DDA3937_RS14170	0.67	-0.7
3,244,699	-		DDA3937_RS14170	0.67	-1.0
3,244,699	-		DDA3937_RS14170	0.67	-0.7
3,244,803	-		DDA3937_RS14170	0.78	-1.4
3,244,816	-		DDA3937_RS14170	0.80	+1.2
3,244,905	+		DDA3937_RS14170	0.90	-0.1
3,244,977	+				-1.3
3,244,978	-				+0.2
3,244,978	-				+3.4
3,244,999	-				+0.4
3,244,999	-				-1.6
3,245,015	+				+0.3
3,245,016	-				-0.1
3,245,016	-				-0.8
3,245,016	-				+0.0
3,245,048	+				-0.9
3,245,049	-				-0.3
3,245,049	-				+2.9
3,245,049	-				+0.2
3,245,049	-				-1.8
3,245,103	+				-0.7
3,245,103	+				-1.2
3,245,104	-				-0.1
3,245,221	+				-0.3
3,245,223	+				-0.6
3,245,223	+				-0.8
3,245,223	+				-0.4
3,245,223	+				-0.9
3,245,223	+				+0.1
3,245,223	+				+3.6
3,245,223	+				-2.4
3,245,223	+				+0.6
3,245,223	+				+1.2
3,245,224	-				+0.1
3,245,224	-				-0.3
3,245,224	-				-1.8
3,245,224	-				-0.7
3,245,224	-				-0.8
3,245,224	-				-1.2
3,245,224	-				-2.4
3,245,224	-				+0.6
3,245,224	-				+0.3
3,245,224	-				+0.2
3,245,224	-				-0.2
3,245,224	-				-0.8
3,245,224	-				-1.2
3,245,378	+		DDA3937_RS14175	0.12	-0.9
3,245,378	+		DDA3937_RS14175	0.12	+0.2
3,245,378	+		DDA3937_RS14175	0.12	+0.4
3,245,378	+		DDA3937_RS14175	0.12	-0.8
3,245,379	-		DDA3937_RS14175	0.12	+0.8
3,245,379	-		DDA3937_RS14175	0.12	+0.7
3,245,379	-		DDA3937_RS14175	0.12	-1.7
3,245,408	-		DDA3937_RS14175	0.13	+0.3
3,245,420	+		DDA3937_RS14175	0.13	+0.1
3,245,420	+		DDA3937_RS14175	0.13	-1.2
3,245,421	-		DDA3937_RS14175	0.13	+0.5
3,245,421	-		DDA3937_RS14175	0.13	-0.3
3,245,421	-		DDA3937_RS14175	0.13	+0.7
3,245,442	+		DDA3937_RS14175	0.14	-0.1
3,245,458	-		DDA3937_RS14175	0.15	+0.8
3,245,729	+		DDA3937_RS14175	0.23	-0.5
3,245,730	-		DDA3937_RS14175	0.23	-0.1
3,245,730	-		DDA3937_RS14175	0.23	-0.2
3,245,730	-		DDA3937_RS14175	0.23	+1.4
3,245,908	+		DDA3937_RS14175	0.29	-1.7
3,245,909	-		DDA3937_RS14175	0.29	-0.4
3,245,940	+		DDA3937_RS14175	0.30	-1.1
3,245,941	-		DDA3937_RS14175	0.30	+0.3