Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13345

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,047,741	+		DDA3937_RS13340	0.61	+3.3
3,047,753	+		DDA3937_RS13340	0.63	+3.3
3,047,760	-		DDA3937_RS13340	0.63	+0.5
3,047,778	+		DDA3937_RS13340	0.66	+1.7
3,047,828	+		DDA3937_RS13340	0.72	+0.6
3,047,873	+		DDA3937_RS13340	0.77	-1.1
3,047,874	-		DDA3937_RS13340	0.77	+3.5
3,047,984	+				-1.7
3,047,984	+				+0.0
3,048,041	+				+0.1
3,048,041	+				+0.6
3,048,041	+				-2.7
3,048,041	+				-0.5
3,048,041	+				-0.9
3,048,042	-				+1.2
3,048,042	-				+1.8
3,048,042	-				+1.3
3,048,042	-				+1.8
3,048,042	-				+1.3
3,048,042	-				+1.7
3,048,042	-				+3.0
3,048,042	-				+0.9
3,048,042	-				+0.6
3,048,042	-				-1.7
3,048,047	+				+5.6
3,048,048	-				-0.7
3,048,050	+				+1.0
3,048,050	+				+3.8
3,048,050	+				+0.9
3,048,051	-				+1.2
3,048,051	-				+2.0
3,048,065	+				+0.3
3,048,065	+				+1.0
3,048,066	-				+0.6
3,048,066	-				+1.1
3,048,069	+				+1.6
3,048,069	+				+1.1
3,048,069	+				+1.6
3,048,087	-				+1.1
3,048,090	-				-0.4
3,048,090	-				+0.5
3,048,131	-				-0.8
3,048,148	+				+0.1
3,048,148	+				+3.0
3,048,149	-				+1.0
3,048,161	-				-0.3
3,048,161	-				-0.6
3,048,224	+				-0.5
3,048,224	+				-0.8
3,048,229	+				-0.0
3,048,230	-				-0.3
3,048,282	-				+2.2
3,048,282	-				+0.8
3,048,282	-				+0.3
3,048,295	-				-0.5
3,048,325	-				-0.7
3,048,325	-				-0.7
3,048,326	+				-0.2
3,048,326	+				-1.1
3,048,326	+				-0.8
3,048,326	+				+0.0
3,048,326	+				-1.1
3,048,327	-				-0.9
3,048,331	+				-0.5
3,048,331	+				-0.8
3,048,332	-				-1.1
3,048,333	+				-0.6
3,048,334	-				+0.8
3,048,338	+				+0.8
3,048,338	+				-1.2
3,048,338	+				-1.3
3,048,338	+				-1.6
3,048,338	+				-1.0
3,048,338	+				+0.5
3,048,338	+				-1.2
3,048,339	-				+0.5
3,048,339	-				-1.5
3,048,339	-				-0.8
3,048,339	-				+0.1
3,048,339	-				-1.2
3,048,339	-				-0.6
3,048,348	-				-0.9
3,048,355	+				-0.7
3,048,355	+				-1.7
3,048,356	-				+0.6
3,048,356	-				+0.1
3,048,356	-				-0.5
3,048,391	+				+0.5
3,048,405	+				+0.5
3,048,405	+				-1.9
3,048,405	+				-2.3
3,048,438	+				-0.6
3,048,438	+				+1.3
3,048,439	-				-0.1
3,048,439	-				+0.3
3,048,453	+				-0.2
3,048,453	+				+1.1
3,048,453	+				+0.1
3,048,453	+				-0.2
3,048,453	+				-0.4
3,048,454	-				-1.8
3,048,454	-				-1.9
3,048,454	-				-2.9
3,048,454	-				-1.2
3,048,457	+				-1.3
3,048,457	+				-1.3
3,048,457	+				-0.6
3,048,457	+				-1.7
3,048,457	+				+0.7
3,048,457	+				+0.1
3,048,457	+				+1.0
3,048,458	-				+0.6
3,048,458	-				+0.6
3,048,458	-				+0.7
3,048,458	-				-0.3
3,048,458	-				+0.3
3,048,458	-				+0.8
3,048,458	-				-1.3
3,048,458	-				+0.7
3,048,458	-				+1.2
3,048,475	+				-1.5
3,048,475	+				+0.9
3,048,475	+				-0.5
3,048,476	-				+0.9
3,048,476	-				+0.5
3,048,476	-				+1.1
3,048,555	+				-1.3
3,048,555	+				+0.5
3,048,555	+				-1.7
3,048,556	-				-0.0
3,048,622	+				-1.5
3,048,635	-				+0.0
3,048,639	+				-2.2
3,048,660	+				-0.3
3,048,661	-				-2.3
3,048,661	-				-2.1
3,048,705	-				-1.9
3,048,711	-				+0.1
3,048,711	-				-0.5
3,048,732	-				-0.5
3,048,754	+				+0.5
3,048,755	-				-2.5
3,048,755	-				-0.9
3,048,758	+				-1.3
3,048,758	+				-1.2
3,048,758	+				-2.7
3,048,758	+				+0.2
3,048,759	-				-1.0
3,048,770	+				-0.5
3,048,771	-				-1.5
3,048,811	+				-3.2
3,048,812	-				-1.6
3,048,852	+				-0.2
3,048,852	+				+0.3
3,048,853	-				-1.1
3,048,853	-				+2.4
3,048,853	-				-2.1
3,048,855	-				-0.9
3,048,855	-				+0.9
3,048,860	+				+0.1
3,048,896	+		DDA3937_RS13345	0.13	-1.2
3,048,896	+		DDA3937_RS13345	0.13	-1.5
3,048,935	+		DDA3937_RS13345	0.15	-1.9
3,049,020	-		DDA3937_RS13345	0.21	-1.6
3,049,038	+		DDA3937_RS13345	0.22	-0.9
3,049,038	+		DDA3937_RS13345	0.22	-1.1
3,049,038	+		DDA3937_RS13345	0.22	-1.2
3,049,039	-		DDA3937_RS13345	0.23	-2.6
3,049,039	-		DDA3937_RS13345	0.23	-1.7
3,049,039	-		DDA3937_RS13345	0.23	-1.3
3,049,039	-		DDA3937_RS13345	0.23	-0.3
3,049,058	+		DDA3937_RS13345	0.24	-1.7
3,049,059	-		DDA3937_RS13345	0.24	-3.0
3,049,059	-		DDA3937_RS13345	0.24	-2.1
3,049,059	-		DDA3937_RS13345	0.24	-2.1
3,049,095	-		DDA3937_RS13345	0.26	-2.1
3,049,117	+		DDA3937_RS13345	0.28	-4.5
3,049,190	+		DDA3937_RS13345	0.33	+0.5
3,049,191	-		DDA3937_RS13345	0.33	-2.2
3,049,236	-		DDA3937_RS13345	0.36	-1.7
3,049,239	-		DDA3937_RS13345	0.36	-0.8
3,049,239	-		DDA3937_RS13345	0.36	-2.2
3,049,484	-		DDA3937_RS13345	0.53	+1.1
3,049,590	-		DDA3937_RS13345	0.60	-2.1
3,049,626	+		DDA3937_RS13345	0.63	-2.7
3,049,627	-		DDA3937_RS13345	0.63	-1.2
3,049,627	-		DDA3937_RS13345	0.63	-3.2
3,049,700	+		DDA3937_RS13345	0.68	-0.6
3,049,715	+		DDA3937_RS13345	0.69	-1.5
3,049,716	-				+0.1
3,049,716	-		DDA3937_RS13345	0.69	-0.5
3,049,726	+				+0.1
3,049,790	+		DDA3937_RS13345	0.74	+4.5
3,049,868	+		DDA3937_RS13345	0.80	-0.5
3,049,932	+		DDA3937_RS13345	0.84	-0.8
3,049,988	+		DDA3937_RS13345	0.88	-1.9
3,050,011	+		DDA3937_RS13345	0.89	-1.5
3,050,012	-		DDA3937_RS13345	0.89	-1.9
3,050,015	+		DDA3937_RS13345	0.90	+0.1
3,050,042	+				-0.8
3,050,043	-				+0.7
3,050,064	+				-1.3
3,050,065	-				-1.9
3,050,078	+				+0.1
3,050,079	-				+0.3
3,050,090	+				-2.3
3,050,125	-				-0.9
3,050,164	-				-1.7
3,050,167	+				+0.7
3,050,167	+				-1.9
3,050,167	+				-0.4
3,050,168	-				-1.1
3,050,172	+				-0.7
3,050,173	-				-1.3
3,050,173	-				-1.8
3,050,173	-				+0.7
3,050,182	-				-1.6
3,050,182	-				+0.1
3,050,182	-				-1.7
3,050,211	+				-0.5
3,050,211	+				-0.0
3,050,211	+				+0.7
3,050,211	+				-1.7
3,050,211	+				+0.1
3,050,212	-				-2.1
3,050,212	-				-2.2
3,050,212	-				-2.3
3,050,212	-				+0.5
3,050,212	-				-2.1
3,050,215	+				-1.6
3,050,215	+				-1.5
3,050,216	-				+0.7
3,050,216	-				-3.1
3,050,216	-				-2.1
3,050,216	-				-1.7
3,050,216	-				-0.9
3,050,221	+				-1.2
3,050,221	+				+0.1
3,050,222	-				-2.0
3,050,222	-				-0.2
3,050,222	-				-0.5
3,050,222	-				-2.7
3,050,224	+				-0.1
3,050,224	+				+1.8
3,050,225	-				-1.1
3,050,240	-				-2.3
3,050,272	+				-0.3
3,050,272	+				+0.1
3,050,273	-				-1.5
3,050,273	-				+0.1
3,050,273	-				-1.3
3,050,273	-				-2.1
3,050,275	-				-0.9
3,050,296	+				-2.1
3,050,297	-				-1.7
3,050,355	+		DDA3937_RS13350	0.21	-2.5
3,050,356	-				+0.1
3,050,460	+		DDA3937_RS13350	0.46	-2.1
3,050,461	-		DDA3937_RS13350	0.47	-3.0
3,050,461	-		DDA3937_RS13350	0.47	-1.2
3,050,467	-		DDA3937_RS13350	0.48	-1.7
3,050,467	-		DDA3937_RS13350	0.48	+2.8
3,050,539	+		DDA3937_RS13350	0.66	-0.9
3,050,540	-		DDA3937_RS13350	0.66	-0.2
3,050,540	-		DDA3937_RS13350	0.66	-0.2
3,050,569	-		DDA3937_RS13350	0.73	+1.1
3,050,572	-		DDA3937_RS13350	0.74	-0.7
3,050,575	-		DDA3937_RS13350	0.74	-0.7
3,050,620	-		DDA3937_RS13350	0.85	-0.9
3,050,620	-		DDA3937_RS13350	0.85	-1.2
3,050,701	+				+0.4
3,050,738	+		DDA3937_RS13355	0.16	+2.1
3,050,791	+		DDA3937_RS13355	0.31	-0.3
3,050,791	+		DDA3937_RS13355	0.31	-1.0
3,050,792	-		DDA3937_RS13355	0.31	-0.5
3,050,796	+		DDA3937_RS13355	0.32	-1.7
3,050,797	-		DDA3937_RS13355	0.33	-1.7
3,050,809	+		DDA3937_RS13355	0.36	-0.9
3,050,843	+		DDA3937_RS13355	0.45	-0.5
3,050,864	-		DDA3937_RS13355	0.51	-1.5
3,050,891	-		DDA3937_RS13355	0.58	-1.6
3,050,995	-		DDA3937_RS13355	0.87	+0.5
3,050,995	-		DDA3937_RS13355	0.87	-0.9
3,050,995	-				+0.1
3,050,995	-		DDA3937_RS13355	0.87	+0.9
3,051,014	+				-1.9
3,051,015	-				-2.5
3,051,059	+				-0.5
3,051,059	+				-0.3
3,051,060	-				-1.9
3,051,092	+				-1.5
3,051,125	+				+0.4
3,051,156	+				-2.1
3,051,157	-				+0.1
3,051,158	+				-1.6