Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13205

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,009,342	-		DDA3937_RS13200	0.50	+2.4
3,009,393	-		DDA3937_RS13200	0.54	-1.8
3,009,393	-				+0.1
3,009,437	+		DDA3937_RS13200	0.58	+0.7
3,009,437	+		DDA3937_RS13200	0.58	-0.2
3,009,437	+		DDA3937_RS13200	0.58	+1.4
3,009,437	+		DDA3937_RS13200	0.58	-0.3
3,009,437	+				-0.5
3,009,437	+		DDA3937_RS13200	0.58	+0.7
3,009,438	-		DDA3937_RS13200	0.58	+0.9
3,009,438	-		DDA3937_RS13200	0.58	+0.4
3,009,438	-		DDA3937_RS13200	0.58	-1.0
3,009,438	-		DDA3937_RS13200	0.58	-0.2
3,009,438	-		DDA3937_RS13200	0.58	-2.1
3,009,438	-		DDA3937_RS13200	0.58	+1.7
3,009,439	+		DDA3937_RS13200	0.58	-0.0
3,009,439	+		DDA3937_RS13200	0.58	-1.0
3,009,469	+		DDA3937_RS13200	0.61	-0.5
3,009,469	+		DDA3937_RS13200	0.61	-1.8
3,009,470	-		DDA3937_RS13200	0.61	-1.1
3,009,543	+		DDA3937_RS13200	0.68	-0.6
3,009,544	-		DDA3937_RS13200	0.68	+0.3
3,009,544	-		DDA3937_RS13200	0.68	-1.5
3,009,544	-				+0.1
3,009,575	+		DDA3937_RS13200	0.71	-0.0
3,009,575	+		DDA3937_RS13200	0.71	+0.6
3,009,575	+		DDA3937_RS13200	0.71	-0.6
3,009,575	+		DDA3937_RS13200	0.71	-1.4
3,009,577	+		DDA3937_RS13200	0.71	-0.5
3,009,577	+		DDA3937_RS13200	0.71	+0.9
3,009,578	-		DDA3937_RS13200	0.71	+0.2
3,009,578	-		DDA3937_RS13200	0.71	-3.2
3,009,578	-		DDA3937_RS13200	0.71	+0.1
3,009,578	-		DDA3937_RS13200	0.71	-0.9
3,009,578	-		DDA3937_RS13200	0.71	+0.1
3,009,578	-		DDA3937_RS13200	0.71	+0.0
3,009,578	-		DDA3937_RS13200	0.71	+0.8
3,009,578	-		DDA3937_RS13200	0.71	-0.5
3,009,578	-		DDA3937_RS13200	0.71	+0.6
3,009,635	+		DDA3937_RS13200	0.76	-2.2
3,009,636	-		DDA3937_RS13200	0.76	+0.6
3,009,728	-		DDA3937_RS13200	0.85	-0.5
3,009,728	-		DDA3937_RS13200	0.85	+0.1
3,009,756	+		DDA3937_RS13200	0.87	-1.4
3,009,845	+				+0.2
3,009,846	-				-0.3
3,009,879	+				+0.1
3,009,880	-				-1.5
3,009,880	-				-0.3
3,009,883	+				+0.1
3,009,891	+				-2.0
3,009,891	+				+2.1
3,009,892	-				+1.1
3,009,893	+				-1.5
3,009,894	-				+0.1
3,009,894	-				+0.1
3,009,898	+				+1.5
3,009,898	+				-1.1
3,009,898	+				+0.2
3,009,899	-				-0.2
3,009,899	-				-2.5
3,009,929	-				-0.0
3,009,972	-				-1.7
3,009,972	-				+1.1
3,010,027	-				-1.0
3,010,070	+				+0.9
3,010,070	+				-1.9
3,010,070	+				-0.3
3,010,071	-				-3.2
3,010,118	-				-2.0
3,010,152	+				-0.8
3,010,207	-				-2.4
3,010,209	+				-1.9
3,010,210	-		DDA3937_RS13205	0.10	-2.4
3,010,446	+		DDA3937_RS13205	0.36	-0.9
3,010,446	+		DDA3937_RS13205	0.36	+0.4
3,010,446	+		DDA3937_RS13205	0.36	-1.5
3,010,454	-		DDA3937_RS13205	0.36	+0.1
3,010,462	+		DDA3937_RS13205	0.37	-1.2
3,010,592	-		DDA3937_RS13205	0.51	-2.1
3,010,592	-		DDA3937_RS13205	0.51	-2.0
3,010,706	+		DDA3937_RS13205	0.64	-0.4
3,010,725	-		DDA3937_RS13205	0.66	-1.9
3,010,793	+		DDA3937_RS13205	0.73	-0.6
3,010,793	+		DDA3937_RS13205	0.73	+0.1
3,010,793	+				-0.5
3,010,979	+				+1.4
3,010,980	-				-1.9
3,010,980	-				-1.5
3,010,981	+				+0.1
3,010,982	-				-1.9
3,010,982	-				-2.1
3,010,982	-				+0.1
3,011,034	-				+0.1
3,011,036	+				-0.3
3,011,037	-				-0.5
3,011,037	-				-1.2
3,011,037	-				-0.6
3,011,074	+				-1.2
3,011,102	-				-1.5
3,011,109	-				-0.7
3,011,109	-				+0.1
3,011,109	-				-3.1
3,011,109	-				+0.1
3,011,109	-				+0.2
3,011,177	+				-0.8
3,011,197	-		DDA3937_RS13210	0.10	-2.2
3,011,245	+		DDA3937_RS13210	0.14	-0.8
3,011,245	+		DDA3937_RS13210	0.14	-2.8
3,011,245	+		DDA3937_RS13210	0.14	+0.7
3,011,245	+		DDA3937_RS13210	0.14	+0.6
3,011,245	+		DDA3937_RS13210	0.14	+1.8
3,011,246	-		DDA3937_RS13210	0.14	-0.9
3,011,246	-		DDA3937_RS13210	0.14	+0.5
3,011,299	+		DDA3937_RS13210	0.19	-0.5
3,011,300	-				+1.1
3,011,367	+		DDA3937_RS13210	0.24	+1.1
3,011,367	+				+1.5
3,011,368	-		DDA3937_RS13210	0.24	-0.4
3,011,370	+		DDA3937_RS13210	0.25	+0.3
3,011,413	+		DDA3937_RS13210	0.28	+2.1
3,011,561	-		DDA3937_RS13210	0.40	+0.0
3,011,623	+		DDA3937_RS13210	0.45	+0.9
3,011,624	-		DDA3937_RS13210	0.45	+0.3
3,011,659	+				-0.9
3,011,749	+		DDA3937_RS13210	0.55	-0.5
3,011,749	+		DDA3937_RS13210	0.55	-0.8
3,011,750	-		DDA3937_RS13210	0.56	-2.9
3,011,792	+		DDA3937_RS13210	0.59	+0.6
3,011,792	+		DDA3937_RS13210	0.59	-3.2
3,011,792	+		DDA3937_RS13210	0.59	-1.2
3,011,792	+		DDA3937_RS13210	0.59	+0.5
3,011,792	+		DDA3937_RS13210	0.59	-1.1
3,011,792	+		DDA3937_RS13210	0.59	-2.6
3,011,792	+		DDA3937_RS13210	0.59	-1.4
3,011,792	+		DDA3937_RS13210	0.59	-1.3
3,011,792	+		DDA3937_RS13210	0.59	+0.4
3,011,792	+		DDA3937_RS13210	0.59	+1.0
3,011,792	+		DDA3937_RS13210	0.59	+0.4
3,011,792	+		DDA3937_RS13210	0.59	-1.5
3,011,792	+		DDA3937_RS13210	0.59	-1.7
3,011,792	+		DDA3937_RS13210	0.59	+0.1
3,011,792	+		DDA3937_RS13210	0.59	-1.1
3,011,792	+		DDA3937_RS13210	0.59	+0.1
3,011,792	+		DDA3937_RS13210	0.59	-1.9
3,011,793	-		DDA3937_RS13210	0.59	-0.8
3,011,793	-		DDA3937_RS13210	0.59	-1.5
3,011,793	-		DDA3937_RS13210	0.59	+0.9
3,011,793	-		DDA3937_RS13210	0.59	-1.2
3,011,793	-		DDA3937_RS13210	0.59	-0.6
3,011,793	-		DDA3937_RS13210	0.59	+1.3
3,011,793	-		DDA3937_RS13210	0.59	-2.2
3,011,793	-		DDA3937_RS13210	0.59	-0.6
3,011,793	-		DDA3937_RS13210	0.59	+0.5
3,011,793	-		DDA3937_RS13210	0.59	-2.4
3,011,793	-		DDA3937_RS13210	0.59	+0.2
3,011,793	-		DDA3937_RS13210	0.59	-1.1
3,011,793	-		DDA3937_RS13210	0.59	+1.1
3,011,793	-		DDA3937_RS13210	0.59	+2.0
3,011,793	-		DDA3937_RS13210	0.59	+0.0
3,011,793	-		DDA3937_RS13210	0.59	+0.4
3,011,793	-		DDA3937_RS13210	0.59	-0.0
3,011,793	-		DDA3937_RS13210	0.59	+0.2
3,011,793	-		DDA3937_RS13210	0.59	-1.2
3,011,793	-		DDA3937_RS13210	0.59	-0.4
3,011,796	+		DDA3937_RS13210	0.59	-0.5
3,011,796	+		DDA3937_RS13210	0.59	+0.2
3,011,796	+		DDA3937_RS13210	0.59	+0.1
3,011,796	+		DDA3937_RS13210	0.59	+0.3
3,011,796	+		DDA3937_RS13210	0.59	-0.6
3,011,797	-		DDA3937_RS13210	0.59	-0.5
3,011,797	-		DDA3937_RS13210	0.59	-0.2
3,011,797	-		DDA3937_RS13210	0.59	+0.1
3,011,833	+		DDA3937_RS13210	0.62	-0.4
3,011,834	-		DDA3937_RS13210	0.62	-1.4
3,011,939	-		DDA3937_RS13210	0.71	-0.4
3,011,939	-		DDA3937_RS13210	0.71	-0.5
3,011,946	+		DDA3937_RS13210	0.71	-1.4
3,011,958	+		DDA3937_RS13210	0.72	+0.4
3,011,958	+		DDA3937_RS13210	0.72	+1.0
3,011,959	-		DDA3937_RS13210	0.73	-0.6