Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13200

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,007,883	+		DDA3937_RS13195	0.33	-0.2
3,007,898	-		DDA3937_RS13195	0.35	-0.3
3,007,898	-		DDA3937_RS13195	0.35	+0.6
3,007,924	+		DDA3937_RS13195	0.37	+0.7
3,007,924	+		DDA3937_RS13195	0.37	+0.3
3,007,925	-		DDA3937_RS13195	0.37	-0.1
3,007,954	+		DDA3937_RS13195	0.40	-1.1
3,007,955	-		DDA3937_RS13195	0.40	-1.7
3,007,955	-		DDA3937_RS13195	0.40	-0.0
3,007,993	+		DDA3937_RS13195	0.44	+0.6
3,007,993	+		DDA3937_RS13195	0.44	-1.9
3,007,993	+		DDA3937_RS13195	0.44	+0.0
3,007,993	+		DDA3937_RS13195	0.44	-0.1
3,007,994	-		DDA3937_RS13195	0.44	-1.7
3,007,994	-		DDA3937_RS13195	0.44	-0.1
3,007,994	-		DDA3937_RS13195	0.44	-2.4
3,007,994	-		DDA3937_RS13195	0.44	+0.5
3,007,994	-		DDA3937_RS13195	0.44	-2.1
3,008,108	-		DDA3937_RS13195	0.55	+0.2
3,008,141	+		DDA3937_RS13195	0.58	+0.1
3,008,142	-		DDA3937_RS13195	0.58	-0.7
3,008,142	-		DDA3937_RS13195	0.58	+1.2
3,008,185	+		DDA3937_RS13195	0.62	-0.5
3,008,185	+		DDA3937_RS13195	0.62	-1.2
3,008,279	+		DDA3937_RS13195	0.71	+2.8
3,008,394	-		DDA3937_RS13195	0.82	-0.2
3,008,411	+		DDA3937_RS13195	0.83	-0.5
3,008,412	-		DDA3937_RS13195	0.83	-0.5
3,008,412	-		DDA3937_RS13195	0.83	+0.4
3,008,413	+		DDA3937_RS13195	0.83	-2.1
3,008,414	-		DDA3937_RS13195	0.83	-0.9
3,008,428	-		DDA3937_RS13195	0.85	+0.1
3,008,433	+		DDA3937_RS13195	0.85	+0.6
3,008,433	+		DDA3937_RS13195	0.85	+0.4
3,008,433	+		DDA3937_RS13195	0.85	+0.3
3,008,433	+		DDA3937_RS13195	0.85	+1.3
3,008,433	+		DDA3937_RS13195	0.85	-0.4
3,008,433	+		DDA3937_RS13195	0.85	-0.1
3,008,433	+		DDA3937_RS13195	0.85	+2.3
3,008,433	+		DDA3937_RS13195	0.85	+0.0
3,008,433	+		DDA3937_RS13195	0.85	+0.5
3,008,433	+		DDA3937_RS13195	0.85	-0.5
3,008,433	+		DDA3937_RS13195	0.85	-1.1
3,008,433	+		DDA3937_RS13195	0.85	-0.6
3,008,434	-		DDA3937_RS13195	0.85	-1.6
3,008,434	-		DDA3937_RS13195	0.85	-0.4
3,008,434	-		DDA3937_RS13195	0.85	-1.2
3,008,434	-		DDA3937_RS13195	0.85	-1.4
3,008,434	-		DDA3937_RS13195	0.85	+0.2
3,008,434	-		DDA3937_RS13195	0.85	-0.9
3,008,434	-		DDA3937_RS13195	0.85	-0.0
3,008,434	-		DDA3937_RS13195	0.85	-0.6
3,008,434	-		DDA3937_RS13195	0.85	+0.3
3,008,441	+		DDA3937_RS13195	0.86	-0.6
3,008,442	-		DDA3937_RS13195	0.86	-0.4
3,008,452	+		DDA3937_RS13195	0.87	+0.1
3,008,452	+		DDA3937_RS13195	0.87	+0.1
3,008,452	+		DDA3937_RS13195	0.87	+0.5
3,008,452	+		DDA3937_RS13195	0.87	-2.8
3,008,452	+		DDA3937_RS13195	0.87	-2.1
3,008,453	-		DDA3937_RS13195	0.87	+0.1
3,008,494	+				-0.7
3,008,494	+				-0.8
3,008,500	+				-0.8
3,008,573	+				-0.6
3,008,573	+				+0.1
3,008,573	+				+0.2
3,008,573	+				+0.6
3,008,573	+				+0.8
3,008,573	+				+0.2
3,008,574	-				-0.7
3,008,574	-				-1.4
3,008,577	+				-1.0
3,008,577	+				+0.7
3,008,578	-				-0.5
3,008,578	-				-1.1
3,008,578	-				-0.9
3,008,593	+				-0.8
3,008,619	+				-1.3
3,008,619	+				+0.1
3,008,625	+				+0.1
3,008,625	+				+1.1
3,008,625	+				+1.3
3,008,626	-				-0.9
3,008,677	-				-2.4
3,008,692	+				-0.4
3,008,692	+				+2.4
3,008,692	+				+0.1
3,008,692	+				-0.4
3,008,692	+				-1.9
3,008,692	+				+0.0
3,008,692	+				+0.4
3,008,692	+				-0.9
3,008,692	+				+1.2
3,008,692	+				+1.2
3,008,692	+				-0.9
3,008,693	-				+0.8
3,008,693	-				-0.7
3,008,693	-				-1.1
3,008,693	-				-0.1
3,008,693	-				-0.7
3,008,693	-				+0.2
3,008,693	-				+0.1
3,008,693	-				-0.8
3,008,693	-				+0.9
3,008,693	-				+0.2
3,008,693	-				+1.1
3,008,733	+				-2.0
3,008,775	+				-2.4
3,008,776	-				-0.3
3,008,851	+				+0.3
3,008,852	-				-0.2
3,008,911	+		DDA3937_RS13200	0.10	+0.6
3,008,911	+		DDA3937_RS13200	0.10	-1.1
3,008,912	-		DDA3937_RS13200	0.10	+0.5
3,008,912	-		DDA3937_RS13200	0.10	+0.1
3,008,912	-		DDA3937_RS13200	0.10	-1.5
3,008,912	-		DDA3937_RS13200	0.10	-0.8
3,008,912	-		DDA3937_RS13200	0.10	-2.7
3,008,926	+		DDA3937_RS13200	0.12	-0.4
3,008,952	+		DDA3937_RS13200	0.14	-0.2
3,009,342	-		DDA3937_RS13200	0.50	+2.4
3,009,393	-		DDA3937_RS13200	0.54	-1.8
3,009,393	-				+0.1
3,009,437	+		DDA3937_RS13200	0.58	+0.7
3,009,437	+		DDA3937_RS13200	0.58	-0.2
3,009,437	+		DDA3937_RS13200	0.58	+1.4
3,009,437	+		DDA3937_RS13200	0.58	-0.3
3,009,437	+				-0.5
3,009,437	+		DDA3937_RS13200	0.58	+0.7
3,009,438	-		DDA3937_RS13200	0.58	+0.9
3,009,438	-		DDA3937_RS13200	0.58	+0.4
3,009,438	-		DDA3937_RS13200	0.58	-1.0
3,009,438	-		DDA3937_RS13200	0.58	-0.2
3,009,438	-		DDA3937_RS13200	0.58	-2.1
3,009,438	-		DDA3937_RS13200	0.58	+1.7
3,009,439	+		DDA3937_RS13200	0.58	-0.0
3,009,439	+		DDA3937_RS13200	0.58	-1.0
3,009,469	+		DDA3937_RS13200	0.61	-0.5
3,009,469	+		DDA3937_RS13200	0.61	-1.8
3,009,470	-		DDA3937_RS13200	0.61	-1.1
3,009,543	+		DDA3937_RS13200	0.68	-0.6
3,009,544	-		DDA3937_RS13200	0.68	+0.3
3,009,544	-		DDA3937_RS13200	0.68	-1.5
3,009,544	-				+0.1
3,009,575	+		DDA3937_RS13200	0.71	-0.0
3,009,575	+		DDA3937_RS13200	0.71	+0.6
3,009,575	+		DDA3937_RS13200	0.71	-0.6
3,009,575	+		DDA3937_RS13200	0.71	-1.4
3,009,577	+		DDA3937_RS13200	0.71	-0.5
3,009,577	+		DDA3937_RS13200	0.71	+0.9
3,009,578	-		DDA3937_RS13200	0.71	+0.2
3,009,578	-		DDA3937_RS13200	0.71	-3.2
3,009,578	-		DDA3937_RS13200	0.71	+0.1
3,009,578	-		DDA3937_RS13200	0.71	-0.9
3,009,578	-		DDA3937_RS13200	0.71	+0.1
3,009,578	-		DDA3937_RS13200	0.71	+0.0
3,009,578	-		DDA3937_RS13200	0.71	+0.8
3,009,578	-		DDA3937_RS13200	0.71	-0.5
3,009,578	-		DDA3937_RS13200	0.71	+0.6
3,009,635	+		DDA3937_RS13200	0.76	-2.2
3,009,636	-		DDA3937_RS13200	0.76	+0.6
3,009,728	-		DDA3937_RS13200	0.85	-0.5
3,009,728	-		DDA3937_RS13200	0.85	+0.1
3,009,756	+		DDA3937_RS13200	0.87	-1.4
3,009,845	+				+0.2
3,009,846	-				-0.3
3,009,879	+				+0.1
3,009,880	-				-1.5
3,009,880	-				-0.3
3,009,883	+				+0.1
3,009,891	+				-2.0
3,009,891	+				+2.1
3,009,892	-				+1.1
3,009,893	+				-1.5
3,009,894	-				+0.1
3,009,894	-				+0.1
3,009,898	+				+1.5
3,009,898	+				-1.1
3,009,898	+				+0.2
3,009,899	-				-0.2
3,009,899	-				-2.5
3,009,929	-				-0.0
3,009,972	-				-1.7
3,009,972	-				+1.1
3,010,027	-				-1.0
3,010,070	+				+0.9
3,010,070	+				-1.9
3,010,070	+				-0.3
3,010,071	-				-3.2
3,010,118	-				-2.0
3,010,152	+				-0.8
3,010,207	-				-2.4
3,010,209	+				-1.9
3,010,210	-		DDA3937_RS13205	0.10	-2.4
3,010,446	+		DDA3937_RS13205	0.36	-0.9
3,010,446	+		DDA3937_RS13205	0.36	+0.4
3,010,446	+		DDA3937_RS13205	0.36	-1.5
3,010,454	-		DDA3937_RS13205	0.36	+0.1
3,010,462	+		DDA3937_RS13205	0.37	-1.2
3,010,592	-		DDA3937_RS13205	0.51	-2.1
3,010,592	-		DDA3937_RS13205	0.51	-2.0
3,010,706	+		DDA3937_RS13205	0.64	-0.4
3,010,725	-		DDA3937_RS13205	0.66	-1.9
3,010,793	+		DDA3937_RS13205	0.73	-0.6
3,010,793	+		DDA3937_RS13205	0.73	+0.1
3,010,793	+				-0.5