Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13030

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,975,406	+		DDA3937_RS13025	0.51	-0.7
2,975,407	-		DDA3937_RS13025	0.51	+0.3
2,975,452	-		DDA3937_RS13025	0.54	-0.5
2,975,452	-		DDA3937_RS13025	0.54	-2.1
2,975,452	-		DDA3937_RS13025	0.54	+0.6
2,975,457	-		DDA3937_RS13025	0.54	+1.1
2,975,703	+		DDA3937_RS13025	0.73	-1.5
2,975,703	+		DDA3937_RS13025	0.73	+0.8
2,975,788	+		DDA3937_RS13025	0.80	-2.5
2,975,830	+		DDA3937_RS13025	0.83	-0.2
2,975,831	-		DDA3937_RS13025	0.83	-1.1
2,975,831	-		DDA3937_RS13025	0.83	-1.0
2,975,831	-		DDA3937_RS13025	0.83	-0.6
2,975,835	+		DDA3937_RS13025	0.84	+0.1
2,975,835	+		DDA3937_RS13025	0.84	-0.4
2,975,836	-		DDA3937_RS13025	0.84	+0.2
2,975,837	+		DDA3937_RS13025	0.84	+0.5
2,975,837	+		DDA3937_RS13025	0.84	-2.4
2,975,837	+		DDA3937_RS13025	0.84	+0.2
2,975,838	-		DDA3937_RS13025	0.84	+0.7
2,975,881	-		DDA3937_RS13025	0.87	-0.3
2,975,884	-		DDA3937_RS13025	0.87	-0.5
2,975,886	+		DDA3937_RS13025	0.87	-0.8
2,975,886	+		DDA3937_RS13025	0.87	-1.1
2,975,886	+		DDA3937_RS13025	0.87	-0.4
2,975,887	-		DDA3937_RS13025	0.88	-1.2
2,975,887	-		DDA3937_RS13025	0.88	-0.0
2,975,919	+				-2.7
2,975,942	+				-0.2
2,975,942	+				+0.1
2,975,942	+				+0.6
2,975,943	-				+0.3
2,975,943	-				-0.6
2,975,943	-				-0.2
2,975,946	+				-0.1
2,975,968	+				-1.8
2,976,034	-				-0.0
2,976,060	+				+0.1
2,976,133	-				-2.1
2,976,153	+				-1.7
2,976,223	-				+0.6
2,976,440	+				-1.9
2,976,441	-				+0.1
2,976,486	+		DDA3937_RS13030	0.13	-0.7
2,976,487	-		DDA3937_RS13030	0.13	+1.1
2,976,527	-		DDA3937_RS13030	0.16	+0.4
2,976,563	+		DDA3937_RS13030	0.20	-0.6
2,976,563	+		DDA3937_RS13030	0.20	-2.2
2,976,567	-		DDA3937_RS13030	0.20	-1.5
2,976,567	-		DDA3937_RS13030	0.20	+0.5
2,976,585	+		DDA3937_RS13030	0.22	-0.7
2,976,585	+		DDA3937_RS13030	0.22	-1.1
2,976,586	-		DDA3937_RS13030	0.22	+0.4
2,976,586	-		DDA3937_RS13030	0.22	-0.4
2,976,590	+				-0.9
2,976,590	+		DDA3937_RS13030	0.22	-2.6
2,976,590	+		DDA3937_RS13030	0.22	-0.5
2,976,590	+		DDA3937_RS13030	0.22	-1.9
2,976,590	+		DDA3937_RS13030	0.22	-1.2
2,976,590	+		DDA3937_RS13030	0.22	-0.1
2,976,591	-		DDA3937_RS13030	0.22	-1.1
2,976,591	-		DDA3937_RS13030	0.22	+0.1
2,976,605	+		DDA3937_RS13030	0.24	-1.3
2,976,605	+		DDA3937_RS13030	0.24	-0.6
2,976,606	-		DDA3937_RS13030	0.24	-1.9
2,976,745	+		DDA3937_RS13030	0.37	+1.1
2,976,746	+		DDA3937_RS13030	0.37	-1.5
2,976,747	+		DDA3937_RS13030	0.37	+0.0
2,976,747	+		DDA3937_RS13030	0.37	+3.3
2,976,747	+		DDA3937_RS13030	0.37	-1.0
2,976,747	+		DDA3937_RS13030	0.37	-1.7
2,976,747	+		DDA3937_RS13030	0.37	+0.5
2,976,747	+		DDA3937_RS13030	0.37	-1.9
2,976,747	+		DDA3937_RS13030	0.37	-1.4
2,976,747	+		DDA3937_RS13030	0.37	-0.9
2,976,747	+		DDA3937_RS13030	0.37	-0.2
2,976,748	-		DDA3937_RS13030	0.37	+1.4
2,976,748	-		DDA3937_RS13030	0.37	-1.2
2,976,748	-		DDA3937_RS13030	0.37	-0.4
2,976,748	-		DDA3937_RS13030	0.37	-0.5
2,976,749	+		DDA3937_RS13030	0.37	-0.2
2,976,749	+		DDA3937_RS13030	0.37	-0.5
2,976,750	-		DDA3937_RS13030	0.37	+0.0
2,976,750	-		DDA3937_RS13030	0.37	-0.2
2,976,870	+		DDA3937_RS13030	0.48	-0.2
2,976,871	-		DDA3937_RS13030	0.48	-0.9
2,976,871	-		DDA3937_RS13030	0.48	-0.8
2,976,908	-		DDA3937_RS13030	0.52	+0.9
2,976,924	+		DDA3937_RS13030	0.53	+1.3
2,976,925	-		DDA3937_RS13030	0.53	+0.1
2,976,963	+		DDA3937_RS13030	0.57	-0.2
2,976,964	-		DDA3937_RS13030	0.57	-1.7
2,976,987	-		DDA3937_RS13030	0.59	+1.6
2,977,097	-		DDA3937_RS13030	0.69	-1.1
2,977,145	+		DDA3937_RS13030	0.74	-1.1
2,977,146	-		DDA3937_RS13030	0.74	-1.7
2,977,220	+				+1.1
2,977,220	+		DDA3937_RS13030	0.81	+2.1
2,977,282	+		DDA3937_RS13030	0.87	-0.6
2,977,282	+		DDA3937_RS13030	0.87	-0.5
2,977,322	+				-0.5
2,977,322	+				+0.5
2,977,323	-				+0.1
2,977,323	-				+1.3
2,977,368	-				-0.7
2,977,411	+				-0.2
2,977,411	+				+1.4
2,977,412	-				-0.9
2,977,412	-				+1.8
2,977,412	-				-3.2
2,977,412	-				-0.8
2,977,412	-				-0.6
2,977,413	+				-0.7
2,977,413	+				-0.7
2,977,413	+				+0.0
2,977,413	+				-2.6
2,977,414	-				+0.3
2,977,414	-				+1.1
2,977,503	+				+0.1
2,977,503	+				-1.4
2,977,504	-				-1.8
2,977,520	-				+0.7
2,977,605	+		DDA3937_RS13035	0.19	+0.9
2,977,606	-		DDA3937_RS13035	0.19	-1.9
2,977,606	-		DDA3937_RS13035	0.19	-0.2
2,977,617	+		DDA3937_RS13035	0.21	-0.5
2,977,644	+		DDA3937_RS13035	0.26	+0.9
2,977,645	-		DDA3937_RS13035	0.26	-1.5
2,977,645	-		DDA3937_RS13035	0.26	-2.2
2,977,681	+		DDA3937_RS13035	0.33	+0.3
2,977,682	-		DDA3937_RS13035	0.33	-1.1
2,977,682	-		DDA3937_RS13035	0.33	-0.8
2,977,682	-		DDA3937_RS13035	0.33	+1.9
2,977,877	-		DDA3937_RS13035	0.69	-0.7
2,977,877	-		DDA3937_RS13035	0.69	-1.5
2,977,915	+		DDA3937_RS13035	0.76	-2.1
2,977,916	-		DDA3937_RS13035	0.77	-1.0
2,977,916	-				+1.7
2,977,916	-		DDA3937_RS13035	0.77	-0.1
2,977,986	-		DDA3937_RS13035	0.90	-1.7
2,977,986	-		DDA3937_RS13035	0.90	-0.5
2,978,011	+				-0.7
2,978,011	+				-0.2
2,978,012	-				-0.6
2,978,012	-				-0.2
2,978,012	-				-0.6
2,978,012	-				-2.6
2,978,015	+				+0.7
2,978,016	-				+1.4
2,978,016	-				-1.5
2,978,016	-				+0.6
2,978,016	-				-0.5
2,978,016	-				+0.8
2,978,016	-				-1.2
2,978,025	-				-1.2
2,978,058	-				-0.7
2,978,062	-				+2.0
2,978,089	-				+0.6
2,978,091	+				-0.3
2,978,091	+				-1.4
2,978,165	+				-1.5
2,978,193	+				-0.8
2,978,206	-				-1.0
2,978,206	-				+0.4
2,978,276	-				+1.1
2,978,276	-				+0.3
2,978,281	+				-1.4
2,978,291	+				-1.5
2,978,294	+				-0.3
2,978,295	-				+1.4
2,978,295	-				-0.4
2,978,305	-				-1.2
2,978,317	-				-0.1
2,978,324	-				+0.1
2,978,325	+				-0.2
2,978,325	+				-2.1
2,978,326	-				+1.3
2,978,326	-				+0.1
2,978,336	+				-0.2
2,978,336	+				+1.5
2,978,336	+				-0.7
2,978,337	-				-1.9
2,978,337	-				+0.8
2,978,337	-				+1.1
2,978,337	-				-0.6
2,978,405	+				-1.0
2,978,405	+				+2.0
2,978,405	+				-0.1
2,978,406	-				-0.5
2,978,406	-				-2.1