Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12970

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,958,252	-		DDA3937_RS12965	0.45	-1.0
2,958,252	-		DDA3937_RS12965	0.45	-0.2
2,958,252	-		DDA3937_RS12965	0.45	-1.4
2,958,287	+		DDA3937_RS12965	0.49	+0.2
2,958,287	+		DDA3937_RS12965	0.49	+1.1
2,958,287	+		DDA3937_RS12965	0.49	-0.1
2,958,312	+		DDA3937_RS12965	0.51	+0.3
2,958,312	+		DDA3937_RS12965	0.51	+0.4
2,958,313	-		DDA3937_RS12965	0.51	-0.5
2,958,313	-		DDA3937_RS12965	0.51	-1.2
2,958,318	+		DDA3937_RS12965	0.52	-0.1
2,958,318	+		DDA3937_RS12965	0.52	-1.0
2,958,318	+		DDA3937_RS12965	0.52	+0.3
2,958,319	-		DDA3937_RS12965	0.52	-1.8
2,958,319	-		DDA3937_RS12965	0.52	-0.6
2,958,319	-		DDA3937_RS12965	0.52	+0.3
2,958,502	+		DDA3937_RS12965	0.70	-0.6
2,958,502	+		DDA3937_RS12965	0.70	-1.7
2,958,777	+				+0.7
2,958,778	-				-1.4
2,958,778	-				+0.9
2,958,913	+				-1.0
2,958,913	+				-0.1
2,958,914	-				-2.0
2,958,914	-				-0.1
2,958,914	-				+0.4
2,958,914	-				-3.0
2,958,914	-				+1.8
2,958,932	+				-1.4
2,958,932	+				-1.2
2,958,933	-				-1.2
2,958,933	-				-2.7
2,958,933	-				-0.9
2,958,933	-				+0.0
2,958,975	+				+0.8
2,958,975	+				+0.8
2,958,975	+				-0.9
2,958,975	+				-0.5
2,958,975	+				-1.5
2,958,975	+				-0.1
2,958,976	-				-0.0
2,958,976	-				-0.1
2,958,976	-				-1.4
2,958,976	-				-1.6
2,958,976	-				+1.4
2,958,976	-				+0.3
2,958,976	-				+1.3
2,958,988	+				-0.9
2,958,988	+				-2.4
2,958,988	+				-1.3
2,958,988	+				+2.2
2,958,988	+				-1.2
2,958,988	+				+0.4
2,958,989	-				+5.8
2,958,989	-				+0.2
2,958,989	-				-0.5
2,959,038	+				+1.8
2,959,040	+				-1.6
2,959,040	+				+0.2
2,959,040	+				-0.8
2,959,040	+				+0.3
2,959,040	+				+0.4
2,959,040	+				+0.1
2,959,040	+				-0.3
2,959,040	+				-1.2
2,959,040	+				-3.2
2,959,040	+				-0.2
2,959,041	-				-0.2
2,959,041	-				+0.4
2,959,041	-				-0.2
2,959,041	-				-0.6
2,959,041	-				-0.7
2,959,041	-				+1.7
2,959,041	-				-0.5
2,959,041	-				+0.9
2,959,044	+				+0.3
2,959,044	+				-0.5
2,959,044	+				+0.6
2,959,044	+				+1.0
2,959,044	+				+1.7
2,959,044	+				+0.5
2,959,044	+				+0.5
2,959,044	+				-0.2
2,959,045	-				+0.3
2,959,045	-				-0.9
2,959,045	-				-0.0
2,959,045	-				-0.2
2,959,045	-				+0.4
2,959,045	-				-2.8
2,959,045	-				-0.5
2,959,046	+				-1.9
2,959,046	+				+1.0
2,959,046	+				-1.5
2,959,046	+				+1.7
2,959,046	+				-2.4
2,959,046	+				-1.8
2,959,047	-				-1.2
2,959,047	-				-1.1
2,959,047	-				-0.6
2,959,047	-				-0.7
2,959,047	-				-0.9
2,959,047	-				-0.2
2,959,047	-				+1.6
2,959,047	-				-0.0
2,959,066	+				+0.0
2,959,067	-				-0.2
2,959,069	+				-1.7
2,959,069	+				-0.1
2,959,070	-				+1.3
2,959,105	+				-1.5
2,959,106	-				-0.2
2,959,133	+		DDA3937_RS12970	0.11	-0.4
2,959,199	+		DDA3937_RS12970	0.36	-1.2
2,959,199	+		DDA3937_RS12970	0.36	+0.1
2,959,199	+		DDA3937_RS12970	0.36	-1.5
2,959,200	-		DDA3937_RS12970	0.37	+0.2
2,959,208	+		DDA3937_RS12970	0.40	-0.2
2,959,208	+		DDA3937_RS12970	0.40	-1.2
2,959,208	+		DDA3937_RS12970	0.40	+0.3
2,959,208	+		DDA3937_RS12970	0.40	-0.2
2,959,208	+		DDA3937_RS12970	0.40	-0.8
2,959,208	+		DDA3937_RS12970	0.40	+3.5
2,959,209	-		DDA3937_RS12970	0.40	-0.5
2,959,209	-		DDA3937_RS12970	0.40	-1.9
2,959,209	-		DDA3937_RS12970	0.40	-1.9
2,959,209	-		DDA3937_RS12970	0.40	-0.3
2,959,209	-		DDA3937_RS12970	0.40	+0.9
2,959,209	-		DDA3937_RS12970	0.40	-1.9
2,959,428	+				-0.6
2,959,428	+				-0.4
2,959,428	+				+3.8
2,959,428	+				-0.1
2,959,428	+				-2.8
2,959,429	-				+0.3
2,959,429	-				+0.5
2,959,429	-				+1.1
2,959,429	-				-0.4
2,959,429	-				+3.1
2,959,429	-				-0.2
2,959,429	-				+1.0
2,959,429	-				-0.3
2,959,429	-				-2.5
2,959,486	+		DDA3937_RS12975	0.16	+0.7
2,959,486	+		DDA3937_RS12975	0.16	-2.3
2,959,486	+		DDA3937_RS12975	0.16	+0.9
2,959,486	+		DDA3937_RS12975	0.16	+0.3
2,959,486	+		DDA3937_RS12975	0.16	+0.1
2,959,486	+		DDA3937_RS12975	0.16	-1.4
2,959,486	+		DDA3937_RS12975	0.16	+1.8
2,959,486	+		DDA3937_RS12975	0.16	+0.1
2,959,486	+		DDA3937_RS12975	0.16	+1.5
2,959,486	+		DDA3937_RS12975	0.16	-0.2
2,959,486	+		DDA3937_RS12975	0.16	-0.2
2,959,486	+		DDA3937_RS12975	0.16	+0.2
2,959,486	+		DDA3937_RS12975	0.16	-2.2
2,959,487	-		DDA3937_RS12975	0.16	-2.2
2,959,487	-		DDA3937_RS12975	0.16	-0.2
2,959,487	-		DDA3937_RS12975	0.16	-1.2
2,959,487	-		DDA3937_RS12975	0.16	-0.5
2,959,487	-		DDA3937_RS12975	0.16	-1.4
2,959,487	-		DDA3937_RS12975	0.16	+0.4
2,959,487	-		DDA3937_RS12975	0.16	-0.5
2,959,590	+		DDA3937_RS12975	0.29	+0.2
2,959,590	+		DDA3937_RS12975	0.29	+0.7
2,959,590	+		DDA3937_RS12975	0.29	-0.1
2,959,591	-		DDA3937_RS12975	0.29	-0.0
2,959,591	-		DDA3937_RS12975	0.29	-0.9
2,959,591	-		DDA3937_RS12975	0.29	-1.0
2,959,591	-		DDA3937_RS12975	0.29	-0.1
2,959,765	+		DDA3937_RS12975	0.50	-1.3
2,959,765	+		DDA3937_RS12975	0.50	-0.5
2,959,765	+		DDA3937_RS12975	0.50	-0.9
2,959,765	+		DDA3937_RS12975	0.50	-1.2
2,959,765	+				+2.1
2,959,766	-		DDA3937_RS12975	0.50	-0.2
2,959,879	-		DDA3937_RS12975	0.63	-0.9
2,959,880	-		DDA3937_RS12975	0.63	-0.7
2,959,880	-		DDA3937_RS12975	0.63	-1.4
2,959,895	+		DDA3937_RS12975	0.65	+1.5
2,959,896	-		DDA3937_RS12975	0.65	-0.0
2,959,896	-		DDA3937_RS12975	0.65	+0.3
2,960,075	-		DDA3937_RS12975	0.87	-1.8
2,960,098	-		DDA3937_RS12975	0.89	+1.5
2,960,165	+				-0.3
2,960,166	-				+0.1
2,960,196	+				+0.4
2,960,196	+				-0.2
2,960,196	+				-1.0
2,960,196	+				+1.1
2,960,197	-				-1.8
2,960,197	-				-0.9
2,960,207	+				+1.5
2,960,272	+				+0.0
2,960,273	-				-0.9
2,960,308	+				-0.6
2,960,309	-				-0.4
2,960,309	-				-0.4
2,960,327	-				+0.0