Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12920

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,947,568	+		DDA3937_RS12915	0.27	-1.4
2,947,568	+		DDA3937_RS12915	0.27	+2.1
2,947,568	+		DDA3937_RS12915	0.27	-1.8
2,947,568	+		DDA3937_RS12915	0.27	-0.6
2,947,568	+		DDA3937_RS12915	0.27	-0.6
2,947,568	+		DDA3937_RS12915	0.27	+0.1
2,947,569	-		DDA3937_RS12915	0.27	-1.5
2,947,569	-		DDA3937_RS12915	0.27	-0.9
2,947,614	+		DDA3937_RS12915	0.31	-0.1
2,947,614	+		DDA3937_RS12915	0.31	+0.1
2,947,614	+		DDA3937_RS12915	0.31	+0.3
2,947,614	+		DDA3937_RS12915	0.31	-1.3
2,947,615	-		DDA3937_RS12915	0.31	-1.2
2,947,687	+		DDA3937_RS12915	0.37	-0.9
2,947,687	+		DDA3937_RS12915	0.37	-0.7
2,947,688	-		DDA3937_RS12915	0.37	-2.4
2,947,688	-		DDA3937_RS12915	0.37	-2.2
2,947,688	-		DDA3937_RS12915	0.37	-1.0
2,947,688	-		DDA3937_RS12915	0.37	-1.0
2,947,688	-		DDA3937_RS12915	0.37	+1.8
2,947,688	-		DDA3937_RS12915	0.37	+0.5
2,947,688	-		DDA3937_RS12915	0.37	+0.2
2,947,693	+		DDA3937_RS12915	0.37	-0.4
2,947,693	+		DDA3937_RS12915	0.37	-0.6
2,947,693	+		DDA3937_RS12915	0.37	+0.3
2,947,693	+		DDA3937_RS12915	0.37	+0.9
2,947,693	+		DDA3937_RS12915	0.37	-0.6
2,947,693	+		DDA3937_RS12915	0.37	-1.1
2,947,693	+		DDA3937_RS12915	0.37	-0.6
2,947,694	-		DDA3937_RS12915	0.37	-0.2
2,947,694	-		DDA3937_RS12915	0.37	-2.3
2,947,694	-		DDA3937_RS12915	0.37	+0.8
2,947,694	-		DDA3937_RS12915	0.37	-0.9
2,947,694	-		DDA3937_RS12915	0.37	-0.2
2,947,694	-		DDA3937_RS12915	0.37	-0.4
2,947,694	-		DDA3937_RS12915	0.37	-0.9
2,947,694	-		DDA3937_RS12915	0.37	+1.3
2,947,694	-		DDA3937_RS12915	0.37	-0.7
2,947,694	-		DDA3937_RS12915	0.37	+0.1
2,947,696	+		DDA3937_RS12915	0.38	+0.6
2,947,696	+		DDA3937_RS12915	0.38	-1.2
2,947,696	+		DDA3937_RS12915	0.38	-0.0
2,947,696	+		DDA3937_RS12915	0.38	+0.8
2,947,696	+		DDA3937_RS12915	0.38	+3.1
2,947,696	+		DDA3937_RS12915	0.38	+1.2
2,947,696	+		DDA3937_RS12915	0.38	-0.2
2,947,697	-		DDA3937_RS12915	0.38	+0.6
2,947,697	-		DDA3937_RS12915	0.38	-2.6
2,947,697	-		DDA3937_RS12915	0.38	-0.9
2,947,697	-		DDA3937_RS12915	0.38	+0.5
2,947,697	-		DDA3937_RS12915	0.38	-0.6
2,947,697	-		DDA3937_RS12915	0.38	-0.2
2,947,697	-		DDA3937_RS12915	0.38	-0.4
2,947,731	+		DDA3937_RS12915	0.40	-0.3
2,947,732	-		DDA3937_RS12915	0.41	-0.4
2,947,732	-		DDA3937_RS12915	0.41	-1.0
2,947,732	-		DDA3937_RS12915	0.41	+0.7
2,947,961	+		DDA3937_RS12915	0.60	-0.3
2,947,961	+		DDA3937_RS12915	0.60	-0.6
2,947,961	+		DDA3937_RS12915	0.60	-0.7
2,947,962	-		DDA3937_RS12915	0.60	+0.9
2,947,962	-		DDA3937_RS12915	0.60	-0.7
2,947,978	+		DDA3937_RS12915	0.61	-0.5
2,948,000	-		DDA3937_RS12915	0.63	-1.0
2,948,000	-		DDA3937_RS12915	0.63	+0.4
2,948,000	-		DDA3937_RS12915	0.63	+0.2
2,948,000	-		DDA3937_RS12915	0.63	-0.3
2,948,000	-		DDA3937_RS12915	0.63	+0.3
2,948,025	+		DDA3937_RS12915	0.65	-0.7
2,948,025	+		DDA3937_RS12915	0.65	-0.6
2,948,095	+		DDA3937_RS12915	0.71	-0.5
2,948,095	+		DDA3937_RS12915	0.71	-0.6
2,948,096	-		DDA3937_RS12915	0.71	-0.0
2,948,096	-		DDA3937_RS12915	0.71	-1.8
2,948,133	+		DDA3937_RS12915	0.74	-0.3
2,948,160	+		DDA3937_RS12915	0.76	-0.8
2,948,160	+		DDA3937_RS12915	0.76	-0.4
2,948,161	-		DDA3937_RS12915	0.77	+0.6
2,948,161	-		DDA3937_RS12915	0.77	+0.3
2,948,163	+		DDA3937_RS12915	0.77	-0.7
2,948,164	-		DDA3937_RS12915	0.77	-0.9
2,948,164	-		DDA3937_RS12915	0.77	-0.6
2,948,164	-		DDA3937_RS12915	0.77	-1.5
2,948,164	-		DDA3937_RS12915	0.77	-0.9
2,948,164	-		DDA3937_RS12915	0.77	-1.1
2,948,164	-		DDA3937_RS12915	0.77	+0.7
2,948,164	-		DDA3937_RS12915	0.77	-0.4
2,948,164	-		DDA3937_RS12915	0.77	-0.2
2,948,199	+		DDA3937_RS12915	0.80	-1.0
2,948,199	+		DDA3937_RS12915	0.80	+0.1
2,948,199	+		DDA3937_RS12915	0.80	-0.4
2,948,199	+		DDA3937_RS12915	0.80	-0.9
2,948,199	+		DDA3937_RS12915	0.80	-0.2
2,948,199	+		DDA3937_RS12915	0.80	-0.3
2,948,200	-		DDA3937_RS12915	0.80	-1.7
2,948,200	-		DDA3937_RS12915	0.80	+1.6
2,948,200	-		DDA3937_RS12915	0.80	-0.0
2,948,200	-		DDA3937_RS12915	0.80	+0.8
2,948,200	-		DDA3937_RS12915	0.80	-1.2
2,948,208	+		DDA3937_RS12915	0.81	-0.0
2,948,208	+		DDA3937_RS12915	0.81	+0.4
2,948,229	+		DDA3937_RS12915	0.82	-1.1
2,948,229	+		DDA3937_RS12915	0.82	+1.0
2,948,346	+				+0.7
2,948,350	+				-0.2
2,948,350	+				-1.1
2,948,437	+				-1.0
2,948,437	+				-0.1
2,948,437	+				+0.2
2,948,437	+				+2.0
2,948,437	+				-1.1
2,948,437	+				+0.3
2,948,437	+				-1.7
2,948,437	+				+0.4
2,948,437	+				-2.0
2,948,437	+				+0.2
2,948,437	+				+0.0
2,948,438	-				+0.1
2,948,438	-				-0.5
2,948,438	-				+1.0
2,948,438	-				+0.4
2,948,438	-				+2.9
2,948,438	-				-0.5
2,948,438	-				+0.4
2,948,438	-				-1.4
2,948,438	-				-1.1
2,948,445	-				+1.2
2,948,475	-				-1.1
2,948,494	+				+2.8
2,948,494	+				+0.3
2,948,494	+				-0.9
2,948,494	+				+0.3
2,948,495	-				-0.5
2,948,495	-				-2.1
2,948,495	-				+0.3
2,948,495	-				+2.4
2,948,562	-				+0.9
2,948,562	-				+0.5
2,948,562	-				-1.0
2,948,612	+		DDA3937_RS12920	0.13	-1.2
2,948,612	+		DDA3937_RS12920	0.13	-0.1
2,948,799	+		DDA3937_RS12920	0.42	-2.4
2,948,800	-		DDA3937_RS12920	0.42	-2.4
2,948,898	+				+0.5
2,949,114	+				-0.9
2,949,114	+				-2.9
2,949,114	+				+0.1
2,949,115	-				-1.5
2,949,115	-				-0.5
2,949,153	-				+1.4
2,949,160	+				+0.5
2,949,180	+				+0.3
2,949,289	+		DDA3937_RS12925	0.10	-1.7
2,949,289	+		DDA3937_RS12925	0.10	-2.1
2,949,289	+		DDA3937_RS12925	0.10	-2.1
2,949,289	+		DDA3937_RS12925	0.10	-0.8
2,949,388	+		DDA3937_RS12925	0.28	+0.2
2,949,389	-		DDA3937_RS12925	0.28	-0.5
2,949,389	-		DDA3937_RS12925	0.28	-2.1
2,949,389	-		DDA3937_RS12925	0.28	+0.8
2,949,389	-				-0.5
2,949,389	-		DDA3937_RS12925	0.28	-1.5
2,949,410	+		DDA3937_RS12925	0.32	+1.6
2,949,442	+		DDA3937_RS12925	0.38	-0.9
2,949,479	+		DDA3937_RS12925	0.45	-0.1
2,949,480	-		DDA3937_RS12925	0.45	-0.8
2,949,507	+		DDA3937_RS12925	0.50	+1.4
2,949,507	+		DDA3937_RS12925	0.50	-0.5
2,949,507	+		DDA3937_RS12925	0.50	+0.3
2,949,508	-		DDA3937_RS12925	0.50	+0.8
2,949,508	-		DDA3937_RS12925	0.50	-1.3
2,949,508	-		DDA3937_RS12925	0.50	-0.5
2,949,534	-				-0.5
2,949,586	-		DDA3937_RS12925	0.64	+0.6
2,949,599	+		DDA3937_RS12925	0.66	+0.1
2,949,602	-		DDA3937_RS12925	0.67	+1.4
2,949,602	-		DDA3937_RS12925	0.67	-0.3
2,949,645	-		DDA3937_RS12925	0.75	+0.9
2,949,650	+		DDA3937_RS12925	0.76	-0.4
2,949,662	+		DDA3937_RS12925	0.78	-1.4
2,949,663	-		DDA3937_RS12925	0.78	-0.9
2,949,663	-		DDA3937_RS12925	0.78	-0.4
2,949,767	+				-0.9
2,949,767	+				-1.5
2,949,842	+				-1.3
2,949,842	+				+1.9
2,949,842	+				-2.5
2,949,842	+				-0.8
2,949,842	+				-0.0
2,949,842	+				-0.4
2,949,843	-				+0.7
2,949,843	-				+0.1
2,949,843	-				-0.1
2,949,843	-				-2.1
2,949,843	-				-0.9
2,949,843	-				+0.9
2,949,844	+				-0.9
2,949,844	+				-0.8
2,949,844	+				+0.4
2,949,844	+				-0.4
2,949,844	+				-1.9
2,949,845	-				-0.4
2,949,864	+				-0.6
2,949,979	+				-1.4
2,949,983	+				-0.2
2,949,983	+				-2.1
2,949,983	+				-0.5
2,949,983	+				-1.5
2,949,983	+				+0.1
2,949,984	-				+0.8
2,949,984	-				-2.5
2,949,984	-				-0.6
2,949,989	-				-0.1
2,949,989	-				-0.5
2,949,989	-				+0.7
2,949,991	+				-2.2
2,949,991	+				+1.4
2,949,991	+				+0.0
2,950,044	-				-0.1
2,950,044	-				+1.2
2,950,049	+				+0.3
2,950,049	+				-0.3
2,950,049	+				+0.3
2,950,050	-				+1.6
2,950,054	-				+0.1
2,950,054	-				-0.1
2,950,103	+				+0.6
2,950,103	+				+0.5
2,950,104	-				-0.1
2,950,104	-				+0.7
2,950,104	-				+0.7
2,950,104	-				+1.0
2,950,104	-				+0.9
2,950,106	+				+0.8
2,950,142	+				+0.1
2,950,142	+				-0.3
2,950,142	+				-1.2
2,950,142	+				+0.7
2,950,142	+				-0.3
2,950,142	+				-0.3
2,950,142	+				+1.4
2,950,142	+				-0.1
2,950,143	-				+0.2
2,950,143	-				+0.7
2,950,143	-				+1.1
2,950,143	-				+0.5
2,950,143	-				+0.6