Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12900

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,941,942	-				-0.8
2,941,994	-				-0.6
2,942,018	+				-0.4
2,942,018	+				-0.2
2,942,094	+				-0.5
2,942,105	-				+0.9
2,942,197	-				-2.3
2,942,215	+				-0.9
2,942,215	+				-0.7
2,942,215	+				-0.7
2,942,216	-				-0.5
2,942,236	+				-3.4
2,942,236	+				-1.6
2,942,236	+				-3.1
2,942,236	+				-0.7
2,942,237	-				-0.3
2,942,237	-				-0.8
2,942,237	-				-1.9
2,942,237	-				-2.6
2,942,237	-				-2.3
2,942,237	-				-2.1
2,942,266	+				+1.8
2,942,297	+				-3.1
2,942,298	-				-0.5
2,942,313	+				-0.8
2,942,313	+				-1.2
2,942,314	-				-4.0
2,942,314	-				-0.5
2,942,318	+				-1.6
2,942,318	+				-2.1
2,942,318	+				-0.2
2,942,367	+		DDA3937_RS12900	0.11	-2.1
2,942,367	+		DDA3937_RS12900	0.11	-1.9
2,942,367	+		DDA3937_RS12900	0.11	-1.9
2,942,367	+		DDA3937_RS12900	0.11	-2.4
2,942,367	+		DDA3937_RS12900	0.11	-1.1
2,942,367	+		DDA3937_RS12900	0.11	+0.6
2,942,367	+		DDA3937_RS12900	0.11	-0.2
2,942,367	+		DDA3937_RS12900	0.11	-3.3
2,942,367	+		DDA3937_RS12900	0.11	-0.9
2,942,367	+		DDA3937_RS12900	0.11	-1.0
2,942,368	-		DDA3937_RS12900	0.12	-0.5
2,942,368	-		DDA3937_RS12900	0.12	-2.5
2,942,368	-		DDA3937_RS12900	0.12	+1.2
2,942,368	-		DDA3937_RS12900	0.12	-0.6
2,942,368	-		DDA3937_RS12900	0.12	-3.6
2,942,368	-		DDA3937_RS12900	0.12	-3.0
2,942,406	+		DDA3937_RS12900	0.15	-1.9
2,942,406	+		DDA3937_RS12900	0.15	-1.3
2,942,406	+		DDA3937_RS12900	0.15	-0.9
2,942,406	+		DDA3937_RS12900	0.15	-1.2
2,942,406	+		DDA3937_RS12900	0.15	-1.1
2,942,406	+		DDA3937_RS12900	0.15	-1.2
2,942,406	+		DDA3937_RS12900	0.15	-2.5
2,942,406	+		DDA3937_RS12900	0.15	-1.7
2,942,407	-		DDA3937_RS12900	0.15	-1.7
2,942,407	-		DDA3937_RS12900	0.15	-1.5
2,942,407	-		DDA3937_RS12900	0.15	-2.1
2,942,407	-		DDA3937_RS12900	0.15	-1.4
2,942,407	-		DDA3937_RS12900	0.15	-2.8
2,942,441	+		DDA3937_RS12900	0.18	-1.0
2,942,477	+		DDA3937_RS12900	0.21	-2.1
2,942,477	+		DDA3937_RS12900	0.21	-2.1
2,942,477	+		DDA3937_RS12900	0.21	+0.7
2,942,477	+		DDA3937_RS12900	0.21	-0.9
2,942,477	+		DDA3937_RS12900	0.21	-1.4
2,942,478	-		DDA3937_RS12900	0.22	-0.6
2,942,526	-		DDA3937_RS12900	0.26	-0.1
2,942,526	-		DDA3937_RS12900	0.26	-1.0
2,942,526	-		DDA3937_RS12900	0.26	-2.0
2,942,528	+		DDA3937_RS12900	0.26	-0.9
2,942,529	-		DDA3937_RS12900	0.26	-0.7
2,942,544	+		DDA3937_RS12900	0.28	-1.1
2,942,545	-		DDA3937_RS12900	0.28	-0.5
2,942,576	+		DDA3937_RS12900	0.30	-0.5
2,942,576	+		DDA3937_RS12900	0.30	-1.3
2,942,576	+		DDA3937_RS12900	0.30	+1.6
2,942,576	+		DDA3937_RS12900	0.30	-1.5
2,942,576	+		DDA3937_RS12900	0.30	+0.6
2,942,577	-		DDA3937_RS12900	0.31	-1.5
2,942,591	+		DDA3937_RS12900	0.32	-0.2
2,942,607	+		DDA3937_RS12900	0.33	-0.6
2,942,607	+		DDA3937_RS12900	0.33	-1.3
2,942,608	-		DDA3937_RS12900	0.33	-1.4
2,942,608	-		DDA3937_RS12900	0.33	-0.9
2,942,608	-		DDA3937_RS12900	0.33	+0.0
2,942,615	+		DDA3937_RS12900	0.34	-1.5
2,942,616	-		DDA3937_RS12900	0.34	-1.1
2,942,616	-		DDA3937_RS12900	0.34	-1.4
2,942,616	-		DDA3937_RS12900	0.34	-1.2
2,942,616	-		DDA3937_RS12900	0.34	-3.6
2,942,616	-		DDA3937_RS12900	0.34	+0.6
2,942,616	-		DDA3937_RS12900	0.34	-0.3
2,942,616	-		DDA3937_RS12900	0.34	-3.9
2,942,616	-		DDA3937_RS12900	0.34	-1.2
2,942,622	+		DDA3937_RS12900	0.35	-1.4
2,942,623	-		DDA3937_RS12900	0.35	+4.0
2,942,623	-		DDA3937_RS12900	0.35	-1.2
2,942,632	+		DDA3937_RS12900	0.36	-2.1
2,942,632	+		DDA3937_RS12900	0.36	-0.9
2,942,632	+		DDA3937_RS12900	0.36	-0.4
2,942,632	+				+0.5
2,942,632	+		DDA3937_RS12900	0.36	-0.9
2,942,632	+		DDA3937_RS12900	0.36	-2.0
2,942,632	+		DDA3937_RS12900	0.36	-3.2
2,942,661	+		DDA3937_RS12900	0.38	-0.2
2,942,661	+		DDA3937_RS12900	0.38	-2.8
2,942,661	+		DDA3937_RS12900	0.38	+0.7
2,942,661	+		DDA3937_RS12900	0.38	-0.4
2,942,662	-		DDA3937_RS12900	0.38	+0.1
2,942,678	+		DDA3937_RS12900	0.40	-1.5
2,942,679	-		DDA3937_RS12900	0.40	-0.6
2,942,684	+		DDA3937_RS12900	0.40	-0.9
2,942,684	+		DDA3937_RS12900	0.40	-1.5
2,942,684	+		DDA3937_RS12900	0.40	-2.6
2,942,684	+		DDA3937_RS12900	0.40	-0.8
2,942,684	+		DDA3937_RS12900	0.40	-1.8
2,942,685	-		DDA3937_RS12900	0.40	-1.1
2,942,685	-		DDA3937_RS12900	0.40	-3.1
2,942,699	+		DDA3937_RS12900	0.42	-1.1
2,942,699	+		DDA3937_RS12900	0.42	-2.7
2,942,699	+		DDA3937_RS12900	0.42	-0.7
2,942,699	+		DDA3937_RS12900	0.42	-0.8
2,942,699	+		DDA3937_RS12900	0.42	-0.7
2,942,700	-		DDA3937_RS12900	0.42	-1.4
2,942,700	-		DDA3937_RS12900	0.42	+0.1
2,942,700	-		DDA3937_RS12900	0.42	+2.7
2,942,703	+		DDA3937_RS12900	0.42	-2.2
2,942,703	+		DDA3937_RS12900	0.42	-1.3
2,942,704	-		DDA3937_RS12900	0.42	-1.1
2,942,704	-		DDA3937_RS12900	0.42	-1.2
2,942,709	-		DDA3937_RS12900	0.43	-0.9
2,942,731	+		DDA3937_RS12900	0.45	-2.9
2,942,731	+		DDA3937_RS12900	0.45	-2.1
2,942,731	+		DDA3937_RS12900	0.45	-2.2
2,942,731	+		DDA3937_RS12900	0.45	-1.5
2,942,731	+		DDA3937_RS12900	0.45	-2.1
2,942,732	-		DDA3937_RS12900	0.45	-1.9
2,942,732	-		DDA3937_RS12900	0.45	-1.4
2,942,732	-		DDA3937_RS12900	0.45	-2.0
2,942,732	-		DDA3937_RS12900	0.45	-0.1
2,942,771	+		DDA3937_RS12900	0.48	-2.1
2,942,826	-		DDA3937_RS12900	0.53	-1.5
2,942,829	+		DDA3937_RS12900	0.53	-0.6
2,942,829	+		DDA3937_RS12900	0.53	-2.5
2,942,829	+		DDA3937_RS12900	0.53	-1.7
2,942,829	+		DDA3937_RS12900	0.53	-3.9
2,942,829	+		DDA3937_RS12900	0.53	-0.7
2,942,829	+		DDA3937_RS12900	0.53	-3.5
2,942,830	-		DDA3937_RS12900	0.53	-0.7
2,942,830	-		DDA3937_RS12900	0.53	+0.4
2,942,830	-		DDA3937_RS12900	0.53	-3.8
2,942,830	-		DDA3937_RS12900	0.53	-1.7
2,942,830	-		DDA3937_RS12900	0.53	-0.5
2,942,830	-		DDA3937_RS12900	0.53	+2.6
2,942,830	-		DDA3937_RS12900	0.53	-1.9
2,942,830	-		DDA3937_RS12900	0.53	-1.5
2,942,830	-		DDA3937_RS12900	0.53	-1.0
2,942,831	+		DDA3937_RS12900	0.54	-1.6
2,942,831	+		DDA3937_RS12900	0.54	-2.0
2,942,831	+		DDA3937_RS12900	0.54	-0.5
2,942,831	+		DDA3937_RS12900	0.54	-0.3
2,942,831	+		DDA3937_RS12900	0.54	-1.4
2,942,831	+		DDA3937_RS12900	0.54	-0.2
2,942,831	+		DDA3937_RS12900	0.54	+1.4
2,942,832	-		DDA3937_RS12900	0.54	-3.4
2,942,832	-		DDA3937_RS12900	0.54	+1.7
2,942,832	-		DDA3937_RS12900	0.54	-0.7
2,942,832	-		DDA3937_RS12900	0.54	-0.2
2,942,832	-		DDA3937_RS12900	0.54	-0.5
2,942,832	-		DDA3937_RS12900	0.54	-0.7
2,942,832	-		DDA3937_RS12900	0.54	-3.3
2,942,832	-		DDA3937_RS12900	0.54	+0.2
2,942,832	-		DDA3937_RS12900	0.54	-1.6
2,942,865	+		DDA3937_RS12900	0.57	+0.4
2,942,865	+		DDA3937_RS12900	0.57	-1.5
2,942,865	+		DDA3937_RS12900	0.57	-0.6
2,942,865	+		DDA3937_RS12900	0.57	+0.3
2,942,865	+		DDA3937_RS12900	0.57	-0.6
2,942,865	+		DDA3937_RS12900	0.57	-2.3
2,942,865	+		DDA3937_RS12900	0.57	-2.6
2,942,866	-		DDA3937_RS12900	0.57	-1.1
2,942,866	-		DDA3937_RS12900	0.57	-0.9
2,942,866	-		DDA3937_RS12900	0.57	-1.1
2,942,866	-		DDA3937_RS12900	0.57	+0.1
2,942,866	-		DDA3937_RS12900	0.57	-0.9
2,942,866	-		DDA3937_RS12900	0.57	-1.9
2,942,866	-		DDA3937_RS12900	0.57	-0.9
2,942,866	-		DDA3937_RS12900	0.57	-1.4
2,942,867	+		DDA3937_RS12900	0.57	-0.4
2,942,867	+		DDA3937_RS12900	0.57	-1.2
2,942,867	+		DDA3937_RS12900	0.57	-1.0
2,942,867	+		DDA3937_RS12900	0.57	-0.0
2,942,867	+		DDA3937_RS12900	0.57	-1.4
2,942,867	+		DDA3937_RS12900	0.57	-1.5
2,942,867	+		DDA3937_RS12900	0.57	-0.9
2,942,867	+		DDA3937_RS12900	0.57	-1.4
2,942,868	-		DDA3937_RS12900	0.57	-0.9
2,942,868	-		DDA3937_RS12900	0.57	-0.2
2,942,868	-		DDA3937_RS12900	0.57	+0.9
2,942,868	-		DDA3937_RS12900	0.57	+0.6
2,942,868	-		DDA3937_RS12900	0.57	-0.8
2,942,868	-		DDA3937_RS12900	0.57	-2.1
2,942,946	+		DDA3937_RS12900	0.64	-3.6
2,942,947	-		DDA3937_RS12900	0.64	-0.6
2,942,964	+		DDA3937_RS12900	0.66	-2.8
2,942,964	+		DDA3937_RS12900	0.66	-1.9
2,942,964	+		DDA3937_RS12900	0.66	+0.1
2,942,964	+		DDA3937_RS12900	0.66	-0.6
2,942,964	+		DDA3937_RS12900	0.66	-0.4
2,942,965	-		DDA3937_RS12900	0.66	-2.1
2,942,965	-		DDA3937_RS12900	0.66	-1.7
2,942,979	+		DDA3937_RS12900	0.67	-2.5
2,942,980	-		DDA3937_RS12900	0.67	-3.7
2,943,003	+		DDA3937_RS12900	0.69	-1.2
2,943,003	+		DDA3937_RS12900	0.69	-1.1
2,943,003	+		DDA3937_RS12900	0.69	-0.9
2,943,003	+		DDA3937_RS12900	0.69	-1.2
2,943,003	+		DDA3937_RS12900	0.69	-2.3
2,943,003	+		DDA3937_RS12900	0.69	-2.9
2,943,004	-		DDA3937_RS12900	0.69	-1.8
2,943,004	-		DDA3937_RS12900	0.69	-1.9
2,943,004	-		DDA3937_RS12900	0.69	-2.6
2,943,005	+		DDA3937_RS12900	0.69	-1.3
2,943,006	-		DDA3937_RS12900	0.69	-1.1
2,943,006	-		DDA3937_RS12900	0.69	-0.5
2,943,006	-		DDA3937_RS12900	0.69	-1.1
2,943,038	+		DDA3937_RS12900	0.72	-0.8
2,943,038	+		DDA3937_RS12900	0.72	-0.6
2,943,128	+		DDA3937_RS12900	0.81	+0.1
2,943,135	+		DDA3937_RS12900	0.81	-0.3
2,943,135	+		DDA3937_RS12900	0.81	-2.4
2,943,135	+		DDA3937_RS12900	0.81	-0.9
2,943,135	+		DDA3937_RS12900	0.81	-2.0
2,943,136	-		DDA3937_RS12900	0.81	+0.1
2,943,136	-		DDA3937_RS12900	0.81	-2.6
2,943,161	+		DDA3937_RS12900	0.84	-1.2
2,943,161	+		DDA3937_RS12900	0.84	-1.0
2,943,161	+		DDA3937_RS12900	0.84	-1.3
2,943,162	-		DDA3937_RS12900	0.84	-2.7
2,943,186	+		DDA3937_RS12900	0.86	-4.4
2,943,186	+		DDA3937_RS12900	0.86	-3.4
2,943,187	-		DDA3937_RS12900	0.86	-3.1
2,943,187	-		DDA3937_RS12900	0.86	-1.5
2,943,198	+		DDA3937_RS12900	0.87	-0.5
2,943,198	+		DDA3937_RS12900	0.87	-1.0
2,943,198	+		DDA3937_RS12900	0.87	-2.1
2,943,199	-		DDA3937_RS12900	0.87	-2.6
2,943,199	-		DDA3937_RS12900	0.87	-3.0
2,943,199	-		DDA3937_RS12900	0.87	-0.9
2,943,199	-		DDA3937_RS12900	0.87	-2.4
2,943,204	-		DDA3937_RS12900	0.87	-0.9
2,943,208	+				-1.2
2,943,209	-		DDA3937_RS12900	0.88	-1.5
2,943,212	+		DDA3937_RS12900	0.88	-1.6
2,943,213	-		DDA3937_RS12900	0.88	-1.5
2,943,219	+		DDA3937_RS12900	0.89	-1.1
2,943,220	-		DDA3937_RS12900	0.89	-1.3
2,943,220	-		DDA3937_RS12900	0.89	+1.1
2,943,220	-		DDA3937_RS12900	0.89	-1.9
2,943,227	+		DDA3937_RS12900	0.90	+0.8
2,943,227	+		DDA3937_RS12900	0.90	-0.1
2,943,227	+		DDA3937_RS12900	0.90	-1.0
2,943,228	-		DDA3937_RS12900	0.90	+0.5
2,943,230	+		DDA3937_RS12900	0.90	-1.4
2,943,230	+		DDA3937_RS12900	0.90	+0.1
2,943,231	-		DDA3937_RS12900	0.90	-2.1
2,943,242	+				-2.8
2,943,247	-				+0.6
2,943,282	-				-0.9
2,943,325	+				-1.5
2,943,325	+				-2.6
2,943,326	-				-0.8
2,943,339	+				-2.2
2,943,348	+				-1.0
2,943,349	-				-2.1
2,943,368	+				-2.3
2,943,368	+				-1.5
2,943,368	+				-1.7
2,943,369	-				-2.6
2,943,369	-				-0.9
2,943,389	-				-0.2
2,943,392	+				-1.2
2,943,392	+				-2.1
2,943,392	+				-2.5
2,943,409	+				-1.7
2,943,445	+				+0.3
2,943,445	+				+0.9
2,943,454	+				+0.2
2,943,458	+				-2.1
2,943,479	-				-1.8
2,943,501	-				-1.6
2,943,580	-				-1.6
2,943,627	+				+0.1
2,943,627	+				-0.2
2,943,641	-				-0.7
2,943,738	-				-0.5
2,943,747	-				-0.3
2,943,802	+				-1.9
2,943,802	+				-1.4
2,943,802	+				+1.0
2,943,803	-				+0.6
2,943,803	-				+0.2
2,943,803	-				-2.1
2,943,836	-				-1.4
2,943,851	-				-2.1
2,943,851	-				-1.1
2,943,851	-				+1.0
2,943,866	+				-0.5
2,943,888	+				+0.8
2,943,889	-				-2.2
2,943,949	+				-1.2
2,944,003	+		DDA3937_RS12905	0.11	-1.9
2,944,003	+		DDA3937_RS12905	0.11	+0.9
2,944,004	-		DDA3937_RS12905	0.12	+0.2
2,944,004	-		DDA3937_RS12905	0.12	-0.0
2,944,042	+		DDA3937_RS12905	0.15	+1.1
2,944,106	+		DDA3937_RS12905	0.21	+0.4
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2,944,140	+				-0.9
2,944,140	+		DDA3937_RS12905	0.24	+1.3
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2,944,140	+		DDA3937_RS12905	0.24	-0.4
2,944,140	+		DDA3937_RS12905	0.24	-0.2
2,944,141	-		DDA3937_RS12905	0.24	+0.5
2,944,141	-		DDA3937_RS12905	0.24	-1.5
2,944,158	+		DDA3937_RS12905	0.25	-0.1
2,944,159	-		DDA3937_RS12905	0.26	-0.2
2,944,159	-		DDA3937_RS12905	0.26	+0.4
2,944,174	+		DDA3937_RS12905	0.27	-1.5
2,944,175	-		DDA3937_RS12905	0.27	-2.4
2,944,214	-		DDA3937_RS12905	0.31	-1.0
2,944,237	+		DDA3937_RS12905	0.33	-0.2
2,944,245	+		DDA3937_RS12905	0.33	+0.6
2,944,252	+		DDA3937_RS12905	0.34	+0.1
2,944,252	+		DDA3937_RS12905	0.34	-1.4
2,944,253	-		DDA3937_RS12905	0.34	-2.7
2,944,253	-		DDA3937_RS12905	0.34	-1.4
2,944,254	+		DDA3937_RS12905	0.34	-0.1
2,944,291	+		DDA3937_RS12905	0.38	-0.2
2,944,291	+		DDA3937_RS12905	0.38	-1.1
2,944,305	+		DDA3937_RS12905	0.39	+0.8
2,944,314	+		DDA3937_RS12905	0.40	-2.1
2,944,314	+		DDA3937_RS12905	0.40	-0.7
2,944,314	+		DDA3937_RS12905	0.40	-1.9
2,944,315	-		DDA3937_RS12905	0.40	+0.1
2,944,315	-		DDA3937_RS12905	0.40	-2.7
2,944,338	+		DDA3937_RS12905	0.42	-0.2
2,944,338	+		DDA3937_RS12905	0.42	+1.6
2,944,338	+		DDA3937_RS12905	0.42	-0.3
2,944,339	-		DDA3937_RS12905	0.42	+0.0