Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12805

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,913,392	-		DDA3937_RS12800	0.66	-2.1
2,913,405	+		DDA3937_RS12800	0.67	-0.9
2,913,406	-		DDA3937_RS12800	0.67	-1.7
2,913,472	-		DDA3937_RS12800	0.73	+0.7
2,913,472	-		DDA3937_RS12800	0.73	-1.9
2,913,686	-				-1.3
2,913,816	+				-1.5
2,913,816	+				-2.4
2,913,878	+				-2.4
2,913,879	-				-1.0
2,913,889	+				-0.6
2,913,889	+				+2.3
2,913,889	+				+0.9
2,913,890	-				-0.7
2,913,890	-				-1.5
2,913,890	-				+0.3
2,913,890	-				-0.9
2,913,890	-				-0.5
2,913,929	+				+2.6
2,913,990	+				+0.7
2,913,990	+				+0.5
2,913,991	-				-0.2
2,913,991	-				+0.4
2,913,993	+				-2.2
2,913,993	+				+1.3
2,913,994	-				-1.5
2,914,009	+				-1.2
2,914,009	+				-0.5
2,914,009	+				+0.2
2,914,009	+				+2.1
2,914,009	+				-0.3
2,914,010	-				-0.8
2,914,020	+				+0.8
2,914,020	+				-0.7
2,914,020	+				+1.6
2,914,020	+				-1.4
2,914,021	-				+0.7
2,914,021	-				-0.8
2,914,021	-				-2.1
2,914,021	-				+0.3
2,914,021	-				-0.1
2,914,055	+				-1.5
2,914,055	+				-0.5
2,914,055	+				-0.5
2,914,055	+				+0.1
2,914,056	-				+0.3
2,914,056	-				-1.5
2,914,056	-				-1.2
2,914,056	-				-1.2
2,914,058	+				+0.1
2,914,075	+				-1.9
2,914,076	-				-1.7
2,914,206	-				-0.5
2,914,242	-				-2.2
2,914,262	+				+0.7
2,914,407	-				+0.6
2,914,407	-				-0.4
2,914,407	-				-1.7
2,914,407	-				-0.5
2,914,410	+				-0.2
2,914,411	-				-1.5
2,914,411	-				-1.2
2,914,468	-				-1.4
2,914,618	-		DDA3937_RS12805	0.15	-1.4
2,914,618	-		DDA3937_RS12805	0.15	-1.7
2,914,618	-		DDA3937_RS12805	0.15	+0.3
2,914,618	-		DDA3937_RS12805	0.15	-0.9
2,914,860	-		DDA3937_RS12805	0.25	-2.0
2,914,887	-		DDA3937_RS12805	0.26	-0.2
2,914,982	+		DDA3937_RS12805	0.30	-2.4
2,915,003	+		DDA3937_RS12805	0.31	-3.2
2,915,003	+		DDA3937_RS12805	0.31	-0.5
2,915,091	+		DDA3937_RS12805	0.35	-1.4
2,915,091	+		DDA3937_RS12805	0.35	-1.0
2,915,091	+		DDA3937_RS12805	0.35	-1.1
2,915,092	-		DDA3937_RS12805	0.35	-0.7
2,915,187	+		DDA3937_RS12805	0.39	+0.8
2,915,188	-		DDA3937_RS12805	0.39	-2.1
2,915,211	+		DDA3937_RS12805	0.40	-0.1
2,915,211	+		DDA3937_RS12805	0.40	-1.7
2,915,211	+		DDA3937_RS12805	0.40	-1.1
2,915,212	-		DDA3937_RS12805	0.40	+0.2
2,915,212	-		DDA3937_RS12805	0.40	-1.2
2,915,212	-		DDA3937_RS12805	0.40	-0.5
2,915,212	-		DDA3937_RS12805	0.40	-0.8
2,915,212	-		DDA3937_RS12805	0.40	-2.1
2,915,258	+		DDA3937_RS12805	0.42	-1.4
2,915,258	+		DDA3937_RS12805	0.42	-2.2
2,915,259	-		DDA3937_RS12805	0.42	-0.8
2,915,264	+		DDA3937_RS12805	0.42	-1.2
2,915,264	+		DDA3937_RS12805	0.42	-0.8
2,915,488	+		DDA3937_RS12805	0.51	-0.2
2,915,653	-		DDA3937_RS12805	0.58	-1.9
2,915,653	-				-0.5
2,915,654	+		DDA3937_RS12805	0.58	-1.3
2,915,654	+		DDA3937_RS12805	0.58	-2.7
2,915,654	+		DDA3937_RS12805	0.58	-2.2
2,915,654	+		DDA3937_RS12805	0.58	+2.1
2,915,654	+		DDA3937_RS12805	0.58	-0.2
2,915,655	-		DDA3937_RS12805	0.58	-2.2
2,915,655	-		DDA3937_RS12805	0.58	-0.3
2,915,655	-		DDA3937_RS12805	0.58	-1.2
2,915,655	-		DDA3937_RS12805	0.58	-2.2
2,915,655	-		DDA3937_RS12805	0.58	+0.6
2,915,655	-		DDA3937_RS12805	0.58	-1.1
2,915,655	-		DDA3937_RS12805	0.58	-0.5
2,915,655	-		DDA3937_RS12805	0.58	-1.7
2,915,655	-		DDA3937_RS12805	0.58	+0.1
2,915,655	-		DDA3937_RS12805	0.58	-2.8
2,915,655	-		DDA3937_RS12805	0.58	-0.7
2,915,655	-		DDA3937_RS12805	0.58	-1.9
2,915,817	+		DDA3937_RS12805	0.65	-1.9
2,915,840	+		DDA3937_RS12805	0.66	-1.9
2,915,840	+		DDA3937_RS12805	0.66	-0.9
2,915,840	+		DDA3937_RS12805	0.66	+0.5
2,915,841	-		DDA3937_RS12805	0.66	-1.0
2,915,841	-		DDA3937_RS12805	0.66	-0.3
2,915,922	-		DDA3937_RS12805	0.69	-0.8
2,915,922	-		DDA3937_RS12805	0.69	-4.1
2,915,985	+		DDA3937_RS12805	0.72	-3.2
2,915,985	+		DDA3937_RS12805	0.72	+0.1
2,915,986	-		DDA3937_RS12805	0.72	-2.2
2,915,986	-		DDA3937_RS12805	0.72	+0.5
2,916,024	+		DDA3937_RS12805	0.74	-1.4
2,916,196	+		DDA3937_RS12805	0.81	-1.4
2,916,196	+		DDA3937_RS12805	0.81	+1.4
2,916,197	-		DDA3937_RS12805	0.81	+0.1
2,916,197	-		DDA3937_RS12805	0.81	-1.5
2,916,421	-				-1.7
2,916,437	+				-0.9
2,916,437	+				-3.2
2,916,437	+				-2.1
2,916,437	+				-1.7
2,916,437	+				+0.0
2,916,438	-				-0.5
2,916,438	-				-1.3
2,916,438	-				-3.2
2,916,438	-				-3.1
2,916,438	-				-1.1
2,916,438	-				-1.7
2,916,438	-				+0.6
2,916,438	-				+0.1
2,916,438	-				-0.0
2,916,441	+				-0.9
2,916,441	+				-3.3
2,916,441	+				-1.8
2,916,441	+				-1.2
2,916,441	+				-4.6
2,916,441	+				-1.9
2,916,441	+				-0.5
2,916,441	+				-2.0
2,916,442	-				-0.7
2,916,442	-				+0.1
2,916,594	+				-1.8
2,916,594	+				-2.0
2,916,594	+				-1.9
2,916,606	+				-1.2
2,916,608	+				+0.3
2,916,608	+				-1.9
2,916,608	+				-2.3
2,916,609	-				-1.4
2,916,621	+				+0.1
2,916,622	-				-1.0
2,916,622	-				-1.2
2,916,622	-				-1.7
2,916,622	-				-1.6
2,916,642	+				-3.4
2,916,643	-				-2.0
2,916,675	+				-3.4
2,916,675	+				-0.0
2,916,676	-				-0.5
2,916,729	+				-1.3
2,916,737	+				-1.2
2,916,737	+				-0.9
2,916,738	-				-0.3
2,916,738	-				+0.0
2,916,839	-				-2.1
2,916,848	+				-1.5
2,916,852	-				-1.1
2,916,931	+				-0.5
2,916,932	-				+0.1
2,916,978	+				-1.3
2,916,983	+				+0.6
2,916,983	+				-1.6
2,916,984	-				-0.3
2,916,984	-				-1.5
2,916,984	-				+0.6
2,917,064	+		DDA3937_RS12810	0.12	-1.4
2,917,066	+		DDA3937_RS12810	0.12	+0.4
2,917,123	+		DDA3937_RS12810	0.19	+2.1
2,917,124	-		DDA3937_RS12810	0.19	-1.9
2,917,130	+		DDA3937_RS12810	0.20	+0.3
2,917,130	+		DDA3937_RS12810	0.20	+0.1
2,917,130	+		DDA3937_RS12810	0.20	+0.5
2,917,130	+		DDA3937_RS12810	0.20	+1.1
2,917,163	+		DDA3937_RS12810	0.24	-0.3
2,917,163	+		DDA3937_RS12810	0.24	-2.2
2,917,163	+		DDA3937_RS12810	0.24	-0.6
2,917,163	+		DDA3937_RS12810	0.24	-1.0
2,917,163	+		DDA3937_RS12810	0.24	-1.7
2,917,164	-		DDA3937_RS12810	0.24	+0.1
2,917,164	-		DDA3937_RS12810	0.24	-0.6
2,917,164	-		DDA3937_RS12810	0.24	-1.2
2,917,295	-		DDA3937_RS12810	0.40	-0.8
2,917,328	+		DDA3937_RS12810	0.44	-0.6
2,917,329	-		DDA3937_RS12810	0.44	-2.7
2,917,329	-		DDA3937_RS12810	0.44	-0.9
2,917,457	+		DDA3937_RS12810	0.60	+1.7
2,917,514	-		DDA3937_RS12810	0.67	+1.4
2,917,631	+		DDA3937_RS12810	0.81	-1.0