Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12780

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,906,625	+		DDA3937_RS12775	0.47	+0.8
2,906,625	+		DDA3937_RS12775	0.47	+0.3
2,906,625	+		DDA3937_RS12775	0.47	-1.0
2,906,659	+		DDA3937_RS12775	0.49	-0.2
2,906,661	+		DDA3937_RS12775	0.49	+0.6
2,906,661	+		DDA3937_RS12775	0.49	+0.6
2,906,661	+		DDA3937_RS12775	0.49	-0.7
2,906,662	-		DDA3937_RS12775	0.49	+0.3
2,906,662	-		DDA3937_RS12775	0.49	+2.9
2,906,662	-		DDA3937_RS12775	0.49	-0.8
2,906,662	-		DDA3937_RS12775	0.49	-2.0
2,906,670	+		DDA3937_RS12775	0.50	-1.9
2,906,670	+		DDA3937_RS12775	0.50	+1.4
2,906,670	+				+1.1
2,906,670	+		DDA3937_RS12775	0.50	-1.0
2,906,671	-		DDA3937_RS12775	0.50	-1.9
2,906,671	-		DDA3937_RS12775	0.50	-1.7
2,906,671	-		DDA3937_RS12775	0.50	+1.1
2,906,671	-		DDA3937_RS12775	0.50	+0.3
2,906,671	-		DDA3937_RS12775	0.50	-1.1
2,906,671	-		DDA3937_RS12775	0.50	-0.1
2,906,671	-		DDA3937_RS12775	0.50	+0.3
2,906,698	+		DDA3937_RS12775	0.52	-1.5
2,906,698	+		DDA3937_RS12775	0.52	-1.2
2,906,698	+		DDA3937_RS12775	0.52	+0.4
2,906,699	-		DDA3937_RS12775	0.52	-2.1
2,906,739	+		DDA3937_RS12775	0.54	-0.8
2,906,781	+		DDA3937_RS12775	0.57	+0.9
2,906,781	+		DDA3937_RS12775	0.57	+1.6
2,906,781	+		DDA3937_RS12775	0.57	-1.5
2,906,782	-		DDA3937_RS12775	0.57	-0.4
2,906,782	-		DDA3937_RS12775	0.57	-0.5
2,906,782	-				-1.5
2,906,782	-		DDA3937_RS12775	0.57	+0.6
2,906,782	-		DDA3937_RS12775	0.57	-0.9
2,906,817	-		DDA3937_RS12775	0.60	+0.5
2,906,862	+		DDA3937_RS12775	0.63	-0.8
2,906,862	+		DDA3937_RS12775	0.63	+0.4
2,906,917	+		DDA3937_RS12775	0.66	+0.9
2,906,917	+		DDA3937_RS12775	0.66	+0.0
2,906,918	-		DDA3937_RS12775	0.66	-0.6
2,906,918	-		DDA3937_RS12775	0.66	+0.8
2,906,918	-		DDA3937_RS12775	0.66	-0.3
2,907,057	+		DDA3937_RS12775	0.76	-0.1
2,907,057	+		DDA3937_RS12775	0.76	+0.0
2,907,057	+		DDA3937_RS12775	0.76	-1.7
2,907,057	+		DDA3937_RS12775	0.76	-2.4
2,907,058	-		DDA3937_RS12775	0.76	-0.6
2,907,058	-		DDA3937_RS12775	0.76	-0.2
2,907,058	-		DDA3937_RS12775	0.76	-0.6
2,907,058	-		DDA3937_RS12775	0.76	+0.8
2,907,150	+		DDA3937_RS12775	0.82	-0.6
2,907,150	+		DDA3937_RS12775	0.82	-0.9
2,907,151	-		DDA3937_RS12775	0.82	-2.1
2,907,151	-		DDA3937_RS12775	0.82	-1.4
2,907,153	+		DDA3937_RS12775	0.82	-0.7
2,907,153	+		DDA3937_RS12775	0.82	+0.0
2,907,153	+		DDA3937_RS12775	0.82	-1.2
2,907,153	+		DDA3937_RS12775	0.82	-0.8
2,907,154	-		DDA3937_RS12775	0.82	-1.6
2,907,154	-		DDA3937_RS12775	0.82	+1.8
2,907,154	-		DDA3937_RS12775	0.82	-0.6
2,907,154	-		DDA3937_RS12775	0.82	+0.6
2,907,154	-		DDA3937_RS12775	0.82	-0.7
2,907,154	-		DDA3937_RS12775	0.82	+1.3
2,907,154	-		DDA3937_RS12775	0.82	-0.6
2,907,154	-		DDA3937_RS12775	0.82	-0.7
2,907,154	-		DDA3937_RS12775	0.82	-0.5
2,907,154	-		DDA3937_RS12775	0.82	-0.6
2,907,154	-		DDA3937_RS12775	0.82	+1.4
2,907,159	+		DDA3937_RS12775	0.82	-0.5
2,907,159	+		DDA3937_RS12775	0.82	+0.5
2,907,159	+		DDA3937_RS12775	0.82	-0.1
2,907,159	+		DDA3937_RS12775	0.82	+0.2
2,907,159	+		DDA3937_RS12775	0.82	-1.1
2,907,160	-		DDA3937_RS12775	0.83	+1.7
2,907,168	+		DDA3937_RS12775	0.83	-0.6
2,907,168	+		DDA3937_RS12775	0.83	-2.7
2,907,168	+		DDA3937_RS12775	0.83	-1.2
2,907,169	-		DDA3937_RS12775	0.83	-2.5
2,907,169	-		DDA3937_RS12775	0.83	+0.5
2,907,169	-		DDA3937_RS12775	0.83	-2.5
2,907,183	+		DDA3937_RS12775	0.84	+0.2
2,907,183	+		DDA3937_RS12775	0.84	-0.5
2,907,183	+		DDA3937_RS12775	0.84	-2.5
2,907,184	-		DDA3937_RS12775	0.84	+0.9
2,907,184	-		DDA3937_RS12775	0.84	+0.4
2,907,184	-		DDA3937_RS12775	0.84	+0.7
2,907,232	-		DDA3937_RS12775	0.87	-0.4
2,907,358	+				-1.5
2,907,358	+				-0.9
2,907,358	+				-0.6
2,907,358	+				+0.7
2,907,359	-				-1.2
2,907,404	+				-2.1
2,907,404	+				-1.8
2,907,404	+				-2.5
2,907,404	+				+0.1
2,907,404	+				-0.7
2,907,405	-				+0.1
2,907,405	-				-0.2
2,907,405	-				+1.4
2,907,405	-				-0.5
2,907,405	-				-0.2
2,907,405	-				+1.8
2,907,412	+				-1.4
2,907,413	-				+0.1
2,907,438	-				-0.2
2,907,500	-		DDA3937_RS12780	0.17	-1.0
2,907,637	+		DDA3937_RS12780	0.54	-0.9
2,907,637	+		DDA3937_RS12780	0.54	-1.5
2,907,637	+		DDA3937_RS12780	0.54	-2.5
2,907,637	+		DDA3937_RS12780	0.54	-1.9
2,907,638	-		DDA3937_RS12780	0.54	+0.2
2,907,638	-		DDA3937_RS12780	0.54	-3.2
2,907,770	+				-2.6
2,907,790	+				-0.5
2,907,790	+				-1.6
2,907,791	-				+0.8
2,907,791	-				-0.2
2,907,830	-				-0.7
2,907,908	-				+0.4
2,907,922	+				-1.4
2,907,922	+				+0.6
2,907,940	+				-1.1
2,907,943	+				-2.6
2,907,944	-				+2.6
2,907,981	+				-1.2
2,907,981	+				+0.1
2,907,981	+				-2.1
2,907,981	+				-3.1
2,907,982	-				-0.9
2,907,982	-				+0.1
2,908,080	-				-0.3
2,908,082	-				-1.4
2,908,094	+				-0.3
2,908,099	+				-1.0
2,908,101	+				-0.3
2,908,120	+				-0.7
2,908,120	+				+0.4
2,908,120	+				+0.1
2,908,121	-				+2.1
2,908,121	-				-0.7
2,908,126	+				-0.8
2,908,149	+				+0.1
2,908,149	+				+0.8
2,908,149	+				-1.0
2,908,150	-				-0.4
2,908,150	-				+2.0
2,908,151	+				-0.2
2,908,151	+				+0.4
2,908,151	+				-0.4
2,908,151	+				-1.5
2,908,151	+				+0.1
2,908,152	-				+0.5
2,908,152	-				+1.1
2,908,152	-				+1.9
2,908,152	-				-0.5
2,908,152	-				-0.0
2,908,152	-				+0.5
2,908,152	-				-0.2
2,908,152	-				-2.4
2,908,171	-				+0.2
2,908,171	-				-0.3
2,908,171	-				+0.0
2,908,225	+				-2.4
2,908,324	+				-1.7
2,908,418	-		DDA3937_RS12785	0.15	-1.4
2,908,436	+		DDA3937_RS12785	0.19	+1.8
2,908,449	+		DDA3937_RS12785	0.23	-0.3
2,908,494	-		DDA3937_RS12785	0.34	-1.0
2,908,497	-		DDA3937_RS12785	0.35	+1.1
2,908,497	-		DDA3937_RS12785	0.35	-0.2
2,908,497	-		DDA3937_RS12785	0.35	-1.7
2,908,553	+		DDA3937_RS12785	0.49	+0.6
2,908,554	-		DDA3937_RS12785	0.49	-2.9
2,908,554	-		DDA3937_RS12785	0.49	-0.5
2,908,606	+		DDA3937_RS12785	0.62	-3.2
2,908,624	-		DDA3937_RS12785	0.66	+0.1
2,908,641	-		DDA3937_RS12785	0.70	+0.5
2,908,641	-		DDA3937_RS12785	0.70	+0.0
2,908,641	-		DDA3937_RS12785	0.70	-0.3
2,908,643	+		DDA3937_RS12785	0.71	-0.0
2,908,643	+		DDA3937_RS12785	0.71	-0.5
2,908,643	+		DDA3937_RS12785	0.71	-0.7
2,908,643	+		DDA3937_RS12785	0.71	+1.4
2,908,644	-		DDA3937_RS12785	0.71	-0.7
2,908,644	-		DDA3937_RS12785	0.71	-2.7
2,908,644	-		DDA3937_RS12785	0.71	+0.6
2,908,696	+		DDA3937_RS12785	0.84	+1.1
2,908,697	-		DDA3937_RS12785	0.84	+0.4
2,908,733	-				-2.9
2,908,750	+				-0.5
2,908,750	+				+2.7
2,908,765	-				-0.2
2,908,773	+				-1.1
2,908,774	-				-0.5
2,908,774	-				+0.1