Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11445

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,596,135	-				+0.5
2,596,135	-				+0.9
2,596,135	-				-0.7
2,596,135	-				-0.9
2,596,172	-				-2.2
2,596,257	-				+2.7
2,596,315	-				-1.7
2,596,335	+				-0.7
2,596,335	+				-1.7
2,596,355	+				-0.6
2,596,355	+				-1.5
2,596,355	+				+2.5
2,596,427	+				-0.5
2,596,455	-		DDA3937_RS11440	0.18	-0.4
2,596,613	+		DDA3937_RS11440	0.72	-1.4
2,596,632	+		DDA3937_RS11440	0.78	-1.7
2,596,632	+		DDA3937_RS11440	0.78	+0.2
2,596,632	+		DDA3937_RS11440	0.78	-1.4
2,596,633	-		DDA3937_RS11440	0.79	+1.0
2,596,633	-				+1.2
2,596,633	-		DDA3937_RS11440	0.79	+0.6
2,596,633	-		DDA3937_RS11440	0.79	+0.1
2,596,633	-		DDA3937_RS11440	0.79	+0.9
2,596,688	+				-1.1
2,596,688	+				-1.2
2,596,688	+				-0.2
2,596,689	-				+1.0
2,596,689	-				+0.4
2,596,689	-				-1.9
2,596,708	+				-1.4
2,596,709	-				-1.5
2,596,712	+				-0.2
2,596,713	-				-0.7
2,596,713	-				-1.7
2,596,713	-				+0.1
2,596,713	-				-0.5
2,596,713	-				+0.6
2,596,735	+				-2.4
2,596,735	+				-0.1
2,596,736	-				+0.3
2,596,736	-				+1.9
2,596,736	-				-0.7
2,596,736	-				-2.1
2,596,736	-				-1.9
2,596,853	+				-0.6
2,596,854	-				-0.4
2,596,913	+				-2.5
2,596,914	-				-2.1
2,596,930	+				-0.7
2,596,931	-				-2.2
2,596,940	+		DDA3937_RS11445	0.10	-1.4
2,597,127	-		DDA3937_RS11445	0.34	+0.1
2,597,127	-		DDA3937_RS11445	0.34	+0.1
2,597,127	-		DDA3937_RS11445	0.34	-1.8
2,597,127	-		DDA3937_RS11445	0.34	+0.3
2,597,254	+		DDA3937_RS11445	0.50	-1.7
2,597,254	+		DDA3937_RS11445	0.50	-1.9
2,597,254	+		DDA3937_RS11445	0.50	+0.1
2,597,255	-		DDA3937_RS11445	0.50	-1.7
2,597,255	-		DDA3937_RS11445	0.50	-0.9
2,597,255	-		DDA3937_RS11445	0.50	-0.3
2,597,258	+		DDA3937_RS11445	0.50	-0.7
2,597,259	-		DDA3937_RS11445	0.50	-0.7
2,597,259	-		DDA3937_RS11445	0.50	-0.6
2,597,259	-		DDA3937_RS11445	0.50	-1.1
2,597,293	+		DDA3937_RS11445	0.55	-0.8
2,597,293	+		DDA3937_RS11445	0.55	-1.9
2,597,294	-		DDA3937_RS11445	0.55	-0.2
2,597,294	-		DDA3937_RS11445	0.55	-2.5
2,597,314	-		DDA3937_RS11445	0.57	-1.9
2,597,314	-		DDA3937_RS11445	0.57	+1.9
2,597,473	+		DDA3937_RS11445	0.77	+1.1
2,597,520	-		DDA3937_RS11445	0.83	-1.9
2,597,550	-		DDA3937_RS11445	0.87	-1.0
2,597,588	+				-1.7
2,597,589	-				+1.0
2,597,630	+				-1.7
2,597,631	-				-1.7
2,597,709	-				-1.9
2,597,711	+				-0.0
2,597,714	-				-0.3
2,597,748	-				-0.7
2,597,750	+				-1.1
2,597,750	+				-0.8
2,597,750	+				+0.4
2,597,751	-				-0.0
2,597,751	-				-1.9
2,597,751	-				-0.2
2,597,751	-				-0.5
2,597,751	-				-0.1
2,597,752	+				-0.8
2,597,752	+				-1.7
2,597,753	-				-1.7
2,597,753	-				-0.1
2,597,753	-				+0.7
2,597,753	-				-2.7
2,597,772	+				+0.9
2,597,772	+				-1.2
2,597,772	+				-0.7
2,597,773	-				+0.9
2,597,773	-				+0.6
2,597,773	-				-0.5
2,597,787	+				-0.7
2,597,787	+				-0.3
2,597,788	-				-1.7
2,597,801	+				-2.1
2,597,804	+				+0.1
2,597,804	+				+0.5
2,597,811	-				-1.3
2,597,815	+				+1.1
2,597,862	+				-1.4
2,597,863	-				-1.7
2,597,863	-				-0.7
2,597,863	-				+0.4
2,597,863	-				+0.4
2,597,895	+				-1.1
2,597,895	+				-1.1
2,597,896	-				+0.3
2,597,896	-				-1.1
2,597,898	-				-1.8
2,597,908	+				-1.5
2,598,049	+		DDA3937_RS11450	0.16	+0.7
2,598,050	-		DDA3937_RS11450	0.16	+0.5
2,598,050	-		DDA3937_RS11450	0.16	-1.1
2,598,050	-		DDA3937_RS11450	0.16	-0.3
2,598,060	+		DDA3937_RS11450	0.17	-0.0
2,598,061	-		DDA3937_RS11450	0.17	-0.1
2,598,061	-		DDA3937_RS11450	0.17	-0.1
2,598,061	-				+0.9
2,598,061	-		DDA3937_RS11450	0.17	-1.5
2,598,087	+		DDA3937_RS11450	0.19	-2.4
2,598,087	+		DDA3937_RS11450	0.19	-0.2
2,598,088	-		DDA3937_RS11450	0.19	+0.2
2,598,088	-		DDA3937_RS11450	0.19	-0.3
2,598,121	+		DDA3937_RS11450	0.22	-0.7
2,598,121	+		DDA3937_RS11450	0.22	-0.7
2,598,121	+		DDA3937_RS11450	0.22	-1.2
2,598,121	+		DDA3937_RS11450	0.22	-1.3
2,598,122	-		DDA3937_RS11450	0.22	+0.6
2,598,122	-		DDA3937_RS11450	0.22	-0.3
2,598,122	-		DDA3937_RS11450	0.22	-2.1
2,598,122	-		DDA3937_RS11450	0.22	-1.7
2,598,145	+		DDA3937_RS11450	0.24	-1.9
2,598,145	+		DDA3937_RS11450	0.24	+1.4
2,598,146	-		DDA3937_RS11450	0.24	-1.9
2,598,153	+		DDA3937_RS11450	0.25	-1.1
2,598,153	+		DDA3937_RS11450	0.25	-2.4
2,598,153	+				+2.2
2,598,153	+		DDA3937_RS11450	0.25	-1.5
2,598,154	-		DDA3937_RS11450	0.25	+0.1
2,598,154	-		DDA3937_RS11450	0.25	-0.1
2,598,154	-		DDA3937_RS11450	0.25	+0.2
2,598,154	-		DDA3937_RS11450	0.25	-0.1
2,598,157	+		DDA3937_RS11450	0.25	+0.7
2,598,244	+		DDA3937_RS11450	0.33	-1.4
2,598,245	-		DDA3937_RS11450	0.33	-0.4
2,598,267	+		DDA3937_RS11450	0.35	-0.1
2,598,267	+		DDA3937_RS11450	0.35	-1.5
2,598,340	+		DDA3937_RS11450	0.41	-0.8
2,598,340	+		DDA3937_RS11450	0.41	+0.0
2,598,341	-		DDA3937_RS11450	0.41	-2.2
2,598,346	+		DDA3937_RS11450	0.42	-0.5
2,598,376	+		DDA3937_RS11450	0.44	-0.5
2,598,376	+		DDA3937_RS11450	0.44	-0.9
2,598,376	+		DDA3937_RS11450	0.44	-1.3
2,598,376	+		DDA3937_RS11450	0.44	-2.9
2,598,376	+		DDA3937_RS11450	0.44	-1.4
2,598,376	+		DDA3937_RS11450	0.44	-1.7
2,598,377	-		DDA3937_RS11450	0.44	+1.1
2,598,377	-		DDA3937_RS11450	0.44	-0.1
2,598,377	-		DDA3937_RS11450	0.44	-0.3
2,598,424	+		DDA3937_RS11450	0.48	-0.1
2,598,425	-		DDA3937_RS11450	0.48	-0.9
2,598,445	-		DDA3937_RS11450	0.50	-0.7
2,598,445	-		DDA3937_RS11450	0.50	-0.8
2,598,448	+		DDA3937_RS11450	0.50	-0.4
2,598,448	+		DDA3937_RS11450	0.50	-2.2
2,598,448	+		DDA3937_RS11450	0.50	-2.7
2,598,448	+				+0.6
2,598,448	+		DDA3937_RS11450	0.50	-1.7
2,598,448	+		DDA3937_RS11450	0.50	-0.8
2,598,448	+		DDA3937_RS11450	0.50	-1.0
2,598,449	-		DDA3937_RS11450	0.50	-0.4
2,598,449	-		DDA3937_RS11450	0.50	-0.1
2,598,449	-		DDA3937_RS11450	0.50	-0.1
2,598,449	-		DDA3937_RS11450	0.50	-2.2
2,598,538	+		DDA3937_RS11450	0.58	+0.4
2,598,538	+		DDA3937_RS11450	0.58	+0.5
2,598,544	-		DDA3937_RS11450	0.59	-0.7