Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10390

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,340,822	+				+0.5
2,340,823	-				+0.9
2,340,845	-				+0.9
2,340,871	+				+0.1
2,340,880	-				+0.3
2,340,900	+				-0.1
2,341,059	+		DDA3937_RS10385	0.19	-0.0
2,341,060	-		DDA3937_RS10385	0.19	-1.4
2,341,078	+		DDA3937_RS10385	0.21	+0.8
2,341,078	+		DDA3937_RS10385	0.21	+0.3
2,341,079	-		DDA3937_RS10385	0.21	+0.0
2,341,079	-		DDA3937_RS10385	0.21	-0.6
2,341,079	-		DDA3937_RS10385	0.21	+0.0
2,341,079	-		DDA3937_RS10385	0.21	+0.6
2,341,079	-		DDA3937_RS10385	0.21	+0.4
2,341,079	-		DDA3937_RS10385	0.21	-0.3
2,341,098	+		DDA3937_RS10385	0.23	+1.2
2,341,098	+		DDA3937_RS10385	0.23	+0.1
2,341,099	-		DDA3937_RS10385	0.23	-0.1
2,341,099	-		DDA3937_RS10385	0.23	-0.8
2,341,099	-		DDA3937_RS10385	0.23	+0.7
2,341,099	-		DDA3937_RS10385	0.23	+0.6
2,341,099	-		DDA3937_RS10385	0.23	-0.5
2,341,119	+		DDA3937_RS10385	0.25	+0.5
2,341,119	+		DDA3937_RS10385	0.25	-0.1
2,341,119	+		DDA3937_RS10385	0.25	+0.8
2,341,119	+		DDA3937_RS10385	0.25	-0.0
2,341,119	+		DDA3937_RS10385	0.25	-0.6
2,341,119	+		DDA3937_RS10385	0.25	+0.8
2,341,120	-		DDA3937_RS10385	0.25	+0.3
2,341,120	-		DDA3937_RS10385	0.25	+3.1
2,341,120	-		DDA3937_RS10385	0.25	-0.3
2,341,120	-		DDA3937_RS10385	0.25	-0.3
2,341,135	+		DDA3937_RS10385	0.27	+0.1
2,341,135	+		DDA3937_RS10385	0.27	+0.4
2,341,135	+		DDA3937_RS10385	0.27	+1.1
2,341,136	-		DDA3937_RS10385	0.27	+2.8
2,341,194	+		DDA3937_RS10385	0.34	+0.4
2,341,195	-		DDA3937_RS10385	0.34	-1.0
2,341,195	-		DDA3937_RS10385	0.34	-1.0
2,341,195	-		DDA3937_RS10385	0.34	+0.8
2,341,195	-		DDA3937_RS10385	0.34	+0.1
2,341,195	-		DDA3937_RS10385	0.34	+0.7
2,341,195	-		DDA3937_RS10385	0.34	-0.3
2,341,252	+		DDA3937_RS10385	0.40	+0.8
2,341,252	+		DDA3937_RS10385	0.40	+0.6
2,341,253	-		DDA3937_RS10385	0.40	-0.3
2,341,253	-		DDA3937_RS10385	0.40	+0.3
2,341,253	-		DDA3937_RS10385	0.40	+0.6
2,341,270	+		DDA3937_RS10385	0.42	+0.1
2,341,270	+		DDA3937_RS10385	0.42	+0.8
2,341,270	+		DDA3937_RS10385	0.42	+0.3
2,341,271	-		DDA3937_RS10385	0.42	+0.3
2,341,377	+		DDA3937_RS10385	0.54	+0.5
2,341,377	+		DDA3937_RS10385	0.54	-0.3
2,341,378	-		DDA3937_RS10385	0.54	-0.1
2,341,378	-		DDA3937_RS10385	0.54	+0.3
2,341,423	-		DDA3937_RS10385	0.59	+0.4
2,341,431	+		DDA3937_RS10385	0.60	+1.1
2,341,464	+		DDA3937_RS10385	0.63	+0.4
2,341,464	+		DDA3937_RS10385	0.63	+0.6
2,341,465	-		DDA3937_RS10385	0.63	-0.1
2,341,465	-		DDA3937_RS10385	0.63	+1.1
2,341,499	+		DDA3937_RS10385	0.67	+0.5
2,341,499	+		DDA3937_RS10385	0.67	+0.4
2,341,499	+		DDA3937_RS10385	0.67	+0.3
2,341,500	-		DDA3937_RS10385	0.67	-0.2
2,341,500	-		DDA3937_RS10385	0.67	-1.5
2,341,559	+				+1.7
2,341,559	+		DDA3937_RS10385	0.74	+0.3
2,341,559	+		DDA3937_RS10385	0.74	-0.1
2,341,559	+		DDA3937_RS10385	0.74	+1.9
2,341,559	+		DDA3937_RS10385	0.74	-0.2
2,341,559	+		DDA3937_RS10385	0.74	-0.5
2,341,559	+		DDA3937_RS10385	0.74	+0.2
2,341,560	-		DDA3937_RS10385	0.74	+1.4
2,341,560	-		DDA3937_RS10385	0.74	+0.3
2,341,560	-		DDA3937_RS10385	0.74	-0.3
2,341,560	-		DDA3937_RS10385	0.74	-0.1
2,341,560	-		DDA3937_RS10385	0.74	+0.2
2,341,561	+		DDA3937_RS10385	0.74	+0.6
2,341,561	+		DDA3937_RS10385	0.74	+0.6
2,341,561	+		DDA3937_RS10385	0.74	+1.6
2,341,561	+		DDA3937_RS10385	0.74	+0.4
2,341,562	-		DDA3937_RS10385	0.74	+0.2
2,341,562	-		DDA3937_RS10385	0.74	+0.5
2,341,562	-		DDA3937_RS10385	0.74	+0.8
2,341,562	-		DDA3937_RS10385	0.74	+0.0
2,341,675	-		DDA3937_RS10385	0.86	+0.5
2,341,810	+				+0.3
2,341,810	+				+0.4
2,341,810	+				+0.3
2,341,810	+				+0.4
2,341,810	+				-0.7
2,341,810	+				-0.2
2,341,811	-				+0.5
2,341,811	-				-0.9
2,341,822	+				+0.5
2,341,822	+				+0.5
2,341,822	+				+0.7
2,341,822	+				-0.0
2,341,822	+				-1.5
2,341,822	+				+0.5
2,341,822	+				+0.0
2,341,822	+				+1.4
2,341,822	+				+0.5
2,341,822	+				+0.0
2,341,823	-				-0.3
2,341,823	-				+2.7
2,341,823	-				+0.5
2,341,823	-				-0.1
2,341,823	-				+0.2
2,341,823	-				+0.9
2,341,823	-				-0.1
2,341,855	+				+1.1
2,341,879	+				+0.9
2,341,879	+				+0.2
2,341,880	-				+0.3
2,341,915	+		DDA3937_RS10390	0.10	-0.0
2,341,915	+		DDA3937_RS10390	0.10	+0.0
2,341,916	-		DDA3937_RS10390	0.10	-0.3
2,341,916	-		DDA3937_RS10390	0.10	-0.0
2,341,916	-		DDA3937_RS10390	0.10	-0.6
2,341,916	-		DDA3937_RS10390	0.10	+0.6
2,341,916	-		DDA3937_RS10390	0.10	+0.4
2,341,972	+		DDA3937_RS10390	0.16	+0.5
2,341,972	+		DDA3937_RS10390	0.16	+3.5
2,341,973	-		DDA3937_RS10390	0.16	-0.4
2,342,083	+		DDA3937_RS10390	0.27	+0.2
2,342,147	+		DDA3937_RS10390	0.34	-0.4
2,342,147	+		DDA3937_RS10390	0.34	+2.6
2,342,147	+		DDA3937_RS10390	0.34	+0.1
2,342,147	+		DDA3937_RS10390	0.34	+0.9
2,342,147	+		DDA3937_RS10390	0.34	+0.6
2,342,147	+		DDA3937_RS10390	0.34	+0.3
2,342,147	+		DDA3937_RS10390	0.34	+0.9
2,342,147	+		DDA3937_RS10390	0.34	+0.4
2,342,147	+		DDA3937_RS10390	0.34	+0.8
2,342,148	-		DDA3937_RS10390	0.34	+0.2
2,342,148	-		DDA3937_RS10390	0.34	-0.2
2,342,148	-		DDA3937_RS10390	0.34	+0.4
2,342,272	+		DDA3937_RS10390	0.46	+1.4
2,342,272	+		DDA3937_RS10390	0.46	-0.1
2,342,272	+		DDA3937_RS10390	0.46	-0.4
2,342,272	+		DDA3937_RS10390	0.46	-0.1
2,342,272	+		DDA3937_RS10390	0.46	-0.2
2,342,273	-		DDA3937_RS10390	0.46	+0.0
2,342,273	-		DDA3937_RS10390	0.46	+0.2
2,342,283	-		DDA3937_RS10390	0.47	+0.3
2,342,283	-		DDA3937_RS10390	0.47	+0.9
2,342,283	-		DDA3937_RS10390	0.47	+1.8
2,342,350	+		DDA3937_RS10390	0.54	+0.1
2,342,351	-		DDA3937_RS10390	0.54	-0.6
2,342,455	+		DDA3937_RS10390	0.65	-1.6
2,342,455	+		DDA3937_RS10390	0.65	-0.6
2,342,455	+		DDA3937_RS10390	0.65	-0.4
2,342,455	+		DDA3937_RS10390	0.65	+0.5
2,342,455	+		DDA3937_RS10390	0.65	+0.0
2,342,456	-		DDA3937_RS10390	0.65	+1.0
2,342,456	-		DDA3937_RS10390	0.65	+0.0
2,342,458	+		DDA3937_RS10390	0.65	+0.3
2,342,458	+		DDA3937_RS10390	0.65	-0.4
2,342,458	+		DDA3937_RS10390	0.65	+0.2
2,342,458	+		DDA3937_RS10390	0.65	+1.1
2,342,458	+		DDA3937_RS10390	0.65	+1.9
2,342,458	+		DDA3937_RS10390	0.65	-0.3
2,342,458	+		DDA3937_RS10390	0.65	+0.8
2,342,459	-		DDA3937_RS10390	0.65	-0.8
2,342,459	-		DDA3937_RS10390	0.65	+0.2
2,342,459	-		DDA3937_RS10390	0.65	-0.1
2,342,459	-		DDA3937_RS10390	0.65	+0.3
2,342,459	-		DDA3937_RS10390	0.65	+0.3
2,342,459	-		DDA3937_RS10390	0.65	+0.1
2,342,464	+		DDA3937_RS10390	0.66	+0.6
2,342,464	+		DDA3937_RS10390	0.66	+0.3
2,342,464	+		DDA3937_RS10390	0.66	+1.9
2,342,465	-		DDA3937_RS10390	0.66	+0.1
2,342,465	-		DDA3937_RS10390	0.66	-0.0
2,342,465	-		DDA3937_RS10390	0.66	-0.2
2,342,516	+		DDA3937_RS10390	0.71	+1.9
2,342,517	-		DDA3937_RS10390	0.71	+0.9
2,342,517	-		DDA3937_RS10390	0.71	+0.2
2,342,517	-		DDA3937_RS10390	0.71	+1.6
2,342,517	-		DDA3937_RS10390	0.71	+0.6
2,342,517	-		DDA3937_RS10390	0.71	-0.3
2,342,517	-		DDA3937_RS10390	0.71	+1.8
2,342,528	-		DDA3937_RS10390	0.72	+0.1
2,342,537	+		DDA3937_RS10390	0.73	-0.5
2,342,538	-		DDA3937_RS10390	0.73	+0.2
2,342,579	+		DDA3937_RS10390	0.77	+0.4
2,342,580	-		DDA3937_RS10390	0.77	-0.6
2,342,580	-		DDA3937_RS10390	0.77	+1.6
2,342,641	+		DDA3937_RS10390	0.84	+0.5
2,342,641	+		DDA3937_RS10390	0.84	+0.0
2,342,642	-		DDA3937_RS10390	0.84	+0.3
2,342,642	-		DDA3937_RS10390	0.84	+0.7
2,342,708	+				+1.0
2,342,708	+				+0.4
2,342,709	-				-1.1
2,342,796	+				+0.6
2,342,796	+				-0.5
2,342,796	+				+1.0
2,342,796	+				-1.9
2,342,796	+				+0.2
2,342,796	+				+0.7
2,342,796	+				+0.9
2,342,797	-				-0.5
2,342,797	-				+0.3
2,342,797	-				+0.4
2,342,797	-				-0.3
2,342,797	-				+0.7
2,342,799	+				-1.3
2,342,800	-				+0.2
2,342,800	-				-0.5
2,342,800	-				-0.4
2,342,800	-				-0.9
2,342,825	+				-0.9
2,342,825	+				-0.2
2,342,826	-				+0.1
2,342,874	+				-0.1
2,342,874	+				+0.5
2,342,874	+				-0.6
2,342,874	+				+1.1
2,342,875	-				+1.0
2,342,875	-				-0.5
2,342,875	-				+0.4
2,342,875	-				+0.4
2,342,938	+		DDA3937_RS10395	0.14	+0.5
2,342,938	+		DDA3937_RS10395	0.14	+0.9
2,342,938	+		DDA3937_RS10395	0.14	-1.3
2,342,939	-		DDA3937_RS10395	0.14	-0.9
2,342,939	-		DDA3937_RS10395	0.14	+0.1
2,342,939	-		DDA3937_RS10395	0.14	-1.3
2,343,036	+		DDA3937_RS10395	0.23	-0.2
2,343,036	+		DDA3937_RS10395	0.23	-0.3
2,343,036	+		DDA3937_RS10395	0.23	+0.4
2,343,037	-		DDA3937_RS10395	0.24	-0.1
2,343,037	-		DDA3937_RS10395	0.24	+0.1
2,343,039	+		DDA3937_RS10395	0.24	-1.0
2,343,039	+		DDA3937_RS10395	0.24	+0.4
2,343,039	+		DDA3937_RS10395	0.24	-0.1
2,343,040	-		DDA3937_RS10395	0.24	-0.0
2,343,040	-		DDA3937_RS10395	0.24	+0.5
2,343,040	-		DDA3937_RS10395	0.24	-0.4
2,343,040	-		DDA3937_RS10395	0.24	+0.3
2,343,040	-		DDA3937_RS10395	0.24	+1.0
2,343,040	-		DDA3937_RS10395	0.24	+0.1
2,343,040	-		DDA3937_RS10395	0.24	+0.1
2,343,040	-		DDA3937_RS10395	0.24	-0.5
2,343,092	+		DDA3937_RS10395	0.29	+0.9
2,343,092	+		DDA3937_RS10395	0.29	+0.3
2,343,092	+		DDA3937_RS10395	0.29	+1.3
2,343,092	+		DDA3937_RS10395	0.29	-0.1
2,343,092	+		DDA3937_RS10395	0.29	-0.6
2,343,092	+		DDA3937_RS10395	0.29	+0.5
2,343,092	+		DDA3937_RS10395	0.29	-0.0
2,343,092	+		DDA3937_RS10395	0.29	+1.1
2,343,092	+		DDA3937_RS10395	0.29	+0.4
2,343,093	-		DDA3937_RS10395	0.29	+0.1
2,343,093	-		DDA3937_RS10395	0.29	+0.4
2,343,093	-		DDA3937_RS10395	0.29	+0.4
2,343,093	-		DDA3937_RS10395	0.29	+0.2
2,343,093	-		DDA3937_RS10395	0.29	+0.3
2,343,165	+		DDA3937_RS10395	0.36	-0.4
2,343,183	+		DDA3937_RS10395	0.38	-0.1
2,343,183	+		DDA3937_RS10395	0.38	+1.0
2,343,183	+		DDA3937_RS10395	0.38	-0.3
2,343,183	+		DDA3937_RS10395	0.38	+0.7
2,343,183	+		DDA3937_RS10395	0.38	+0.6
2,343,184	-		DDA3937_RS10395	0.38	+0.5
2,343,184	-		DDA3937_RS10395	0.38	-2.1
2,343,184	-		DDA3937_RS10395	0.38	+1.6
2,343,187	+		DDA3937_RS10395	0.39	+0.0
2,343,187	+		DDA3937_RS10395	0.39	+0.2
2,343,187	+		DDA3937_RS10395	0.39	-0.8
2,343,187	+		DDA3937_RS10395	0.39	+0.7
2,343,187	+		DDA3937_RS10395	0.39	-0.8
2,343,187	+		DDA3937_RS10395	0.39	-0.5
2,343,187	+		DDA3937_RS10395	0.39	+0.3
2,343,188	-		DDA3937_RS10395	0.39	+0.1
2,343,188	-		DDA3937_RS10395	0.39	-0.5
2,343,278	-		DDA3937_RS10395	0.48	+1.7
2,343,312	+		DDA3937_RS10395	0.51	-0.7
2,343,425	+		DDA3937_RS10395	0.62	-0.1
2,343,425	+		DDA3937_RS10395	0.62	+0.4
2,343,425	+		DDA3937_RS10395	0.62	+1.0
2,343,425	+		DDA3937_RS10395	0.62	+1.0
2,343,426	-		DDA3937_RS10395	0.62	-1.0
2,343,426	-		DDA3937_RS10395	0.62	-0.3
2,343,426	-		DDA3937_RS10395	0.62	+0.5
2,343,426	-		DDA3937_RS10395	0.62	+0.4
2,343,426	-		DDA3937_RS10395	0.62	-0.2
2,343,426	-		DDA3937_RS10395	0.62	+0.3
2,343,426	-		DDA3937_RS10395	0.62	+0.1
2,343,511	+		DDA3937_RS10395	0.71	+0.2
2,343,511	+		DDA3937_RS10395	0.71	+0.0
2,343,511	+		DDA3937_RS10395	0.71	+1.7
2,343,511	+		DDA3937_RS10395	0.71	+0.7
2,343,511	+		DDA3937_RS10395	0.71	+0.4
2,343,511	+		DDA3937_RS10395	0.71	+0.2
2,343,511	+		DDA3937_RS10395	0.71	+0.5
2,343,511	+		DDA3937_RS10395	0.71	-0.1
2,343,511	+		DDA3937_RS10395	0.71	-0.3
2,343,511	+		DDA3937_RS10395	0.71	+0.3
2,343,511	+		DDA3937_RS10395	0.71	+0.5
2,343,511	+		DDA3937_RS10395	0.71	+0.5
2,343,511	+		DDA3937_RS10395	0.71	+0.2
2,343,512	-		DDA3937_RS10395	0.71	+0.4
2,343,512	-		DDA3937_RS10395	0.71	-0.1
2,343,512	-		DDA3937_RS10395	0.71	-0.2
2,343,512	-		DDA3937_RS10395	0.71	+0.0
2,343,512	-		DDA3937_RS10395	0.71	+1.5
2,343,512	-		DDA3937_RS10395	0.71	-0.1
2,343,512	-		DDA3937_RS10395	0.71	+0.1
2,343,512	-		DDA3937_RS10395	0.71	-0.6
2,343,512	-		DDA3937_RS10395	0.71	-0.1
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2,343,512	-		DDA3937_RS10395	0.71	+1.1
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2,343,512	-		DDA3937_RS10395	0.71	+0.1
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