Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09695

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,188,270	+				+0.4
2,188,270	+				-0.8
2,188,270	+				+1.0
2,188,270	+				-0.4
2,188,270	+				+0.7
2,188,270	+				-1.8
2,188,275	+				-2.3
2,188,286	+				+0.6
2,188,290	+				-1.1
2,188,538	-		DDA3937_RS09690	0.79	+0.1
2,188,626	+				-1.8
2,188,626	+				-0.4
2,188,626	+				+0.3
2,188,627	-				+0.6
2,188,703	-				-2.3
2,188,703	-				-0.7
2,188,778	-				-1.9
2,188,825	-				-3.3
2,188,826	+				-2.2
2,188,850	-				+4.4
2,188,917	+				+0.4
2,188,918	-				-2.3
2,188,919	+				-0.3
2,188,989	+				-1.2
2,188,992	+				-1.3
2,188,992	+				-1.8
2,188,992	+				-1.9
2,188,992	+				-0.7
2,188,993	-				-0.4
2,188,993	-				+0.3
2,188,993	-				-1.6
2,188,993	-				+1.0
2,189,047	-				+1.0
2,189,049	+				-0.9
2,189,050	-				-1.0
2,189,181	+				+0.0
2,189,215	+		DDA3937_RS09695	0.13	+1.0
2,189,215	+		DDA3937_RS09695	0.13	-0.7
2,189,215	+		DDA3937_RS09695	0.13	+0.0
2,189,215	+		DDA3937_RS09695	0.13	-0.4
2,189,215	+		DDA3937_RS09695	0.13	+1.0
2,189,221	+		DDA3937_RS09695	0.14	+1.4
2,189,221	+		DDA3937_RS09695	0.14	-1.0
2,189,221	+		DDA3937_RS09695	0.14	-1.0
2,189,221	+		DDA3937_RS09695	0.14	-1.3
2,189,221	+				+1.7
2,189,221	+		DDA3937_RS09695	0.14	-1.8
2,189,221	+		DDA3937_RS09695	0.14	+0.0
2,189,221	+		DDA3937_RS09695	0.14	+2.1
2,189,222	-		DDA3937_RS09695	0.14	+0.3
2,189,222	-		DDA3937_RS09695	0.14	-0.6
2,189,222	-				+0.6
2,189,222	-		DDA3937_RS09695	0.14	+0.5
2,189,222	-		DDA3937_RS09695	0.14	+1.5
2,189,222	-		DDA3937_RS09695	0.14	-1.1
2,189,261	+		DDA3937_RS09695	0.16	-1.2
2,189,261	+		DDA3937_RS09695	0.16	+2.3
2,189,262	-		DDA3937_RS09695	0.16	-1.3
2,189,262	-		DDA3937_RS09695	0.16	+0.2
2,189,262	-		DDA3937_RS09695	0.16	+0.8
2,189,262	-		DDA3937_RS09695	0.16	-0.6
2,189,262	-		DDA3937_RS09695	0.16	+0.0
2,189,322	+		DDA3937_RS09695	0.19	+0.9
2,189,362	-		DDA3937_RS09695	0.21	+1.0
2,189,362	-		DDA3937_RS09695	0.21	+0.4
2,189,362	-		DDA3937_RS09695	0.21	-0.2
2,189,410	+		DDA3937_RS09695	0.24	-0.8
2,189,411	-		DDA3937_RS09695	0.24	-0.7
2,189,411	-		DDA3937_RS09695	0.24	-0.6
2,189,411	-		DDA3937_RS09695	0.24	+0.8
2,189,411	-		DDA3937_RS09695	0.24	-0.4
2,189,411	-		DDA3937_RS09695	0.24	+0.3
2,189,411	-				+1.6
2,189,411	-		DDA3937_RS09695	0.24	-0.3
2,189,411	-		DDA3937_RS09695	0.24	+1.4
2,189,411	-		DDA3937_RS09695	0.24	+1.8
2,189,411	-		DDA3937_RS09695	0.24	+3.6
2,189,464	+		DDA3937_RS09695	0.27	-1.0
2,189,464	+		DDA3937_RS09695	0.27	+0.6
2,189,464	+				+0.0
2,189,464	+		DDA3937_RS09695	0.27	-1.2
2,189,465	-		DDA3937_RS09695	0.27	+1.0
2,189,465	-		DDA3937_RS09695	0.27	+2.2
2,189,465	-		DDA3937_RS09695	0.27	-1.2
2,189,467	-		DDA3937_RS09695	0.27	-0.1
2,189,467	-		DDA3937_RS09695	0.27	-1.7
2,189,481	+		DDA3937_RS09695	0.27	+1.4
2,189,541	+		DDA3937_RS09695	0.31	-0.4
2,189,580	+		DDA3937_RS09695	0.33	+0.3
2,189,608	+		DDA3937_RS09695	0.34	+0.4
2,189,608	+		DDA3937_RS09695	0.34	+1.0
2,189,609	-		DDA3937_RS09695	0.34	-0.3
2,189,610	+		DDA3937_RS09695	0.34	+0.8
2,189,611	-		DDA3937_RS09695	0.34	-2.7
2,189,611	-		DDA3937_RS09695	0.34	+1.2
2,189,611	-		DDA3937_RS09695	0.34	-0.5
2,189,611	-		DDA3937_RS09695	0.34	+1.9
2,189,613	+		DDA3937_RS09695	0.34	-2.2
2,189,614	-		DDA3937_RS09695	0.34	-0.3
2,189,614	-		DDA3937_RS09695	0.34	-2.0
2,189,614	-				+3.3
2,189,644	+		DDA3937_RS09695	0.36	-0.3
2,189,644	+		DDA3937_RS09695	0.36	-0.8
2,189,644	+		DDA3937_RS09695	0.36	+1.0
2,189,644	+		DDA3937_RS09695	0.36	+1.3
2,189,644	+		DDA3937_RS09695	0.36	+0.4
2,189,645	-		DDA3937_RS09695	0.36	+0.2
2,189,645	-		DDA3937_RS09695	0.36	-2.0
2,189,647	+		DDA3937_RS09695	0.36	-1.3
2,189,648	-		DDA3937_RS09695	0.36	+0.0
2,189,648	-		DDA3937_RS09695	0.36	-1.2
2,189,648	-				+2.3
2,189,648	-		DDA3937_RS09695	0.36	-0.4
2,189,648	-		DDA3937_RS09695	0.36	-2.9
2,189,648	-		DDA3937_RS09695	0.36	-1.1
2,189,648	-		DDA3937_RS09695	0.36	-2.2
2,189,688	+		DDA3937_RS09695	0.38	-0.5
2,189,688	+		DDA3937_RS09695	0.38	-1.1
2,189,689	-		DDA3937_RS09695	0.38	+0.2
2,189,689	-		DDA3937_RS09695	0.38	-0.4
2,189,703	-		DDA3937_RS09695	0.39	+1.0
2,189,703	-		DDA3937_RS09695	0.39	+1.0
2,189,703	-		DDA3937_RS09695	0.39	+0.0
2,189,709	+		DDA3937_RS09695	0.40	-0.6
2,189,710	-		DDA3937_RS09695	0.40	+0.3
2,189,710	-		DDA3937_RS09695	0.40	-2.3
2,189,710	-		DDA3937_RS09695	0.40	-0.2
2,189,710	-		DDA3937_RS09695	0.40	+1.7
2,189,710	-		DDA3937_RS09695	0.40	-1.0
2,189,712	+		DDA3937_RS09695	0.40	-1.6
2,189,713	-		DDA3937_RS09695	0.40	-0.1
2,189,713	-		DDA3937_RS09695	0.40	+0.0
2,189,739	+		DDA3937_RS09695	0.41	-1.0
2,189,772	-		DDA3937_RS09695	0.43	-0.1
2,189,790	+		DDA3937_RS09695	0.44	+0.1
2,189,790	+		DDA3937_RS09695	0.44	+1.1
2,189,790	+		DDA3937_RS09695	0.44	-2.3
2,189,791	-		DDA3937_RS09695	0.44	-0.6
2,189,791	-		DDA3937_RS09695	0.44	-0.7
2,189,792	+		DDA3937_RS09695	0.44	-0.6
2,189,792	+		DDA3937_RS09695	0.44	-0.7
2,189,793	-		DDA3937_RS09695	0.44	+0.4
2,189,793	-				+0.0
2,189,824	+		DDA3937_RS09695	0.46	-0.7
2,189,828	+		DDA3937_RS09695	0.46	+2.1
2,189,828	+		DDA3937_RS09695	0.46	-0.2
2,189,829	-		DDA3937_RS09695	0.46	-0.2
2,189,829	-				+2.9
2,189,895	-		DDA3937_RS09695	0.49	+2.8
2,189,895	-		DDA3937_RS09695	0.49	+0.4
2,189,986	+		DDA3937_RS09695	0.54	+0.9
2,189,987	-		DDA3937_RS09695	0.54	-1.6
2,190,027	+		DDA3937_RS09695	0.56	-0.1
2,190,027	+		DDA3937_RS09695	0.56	+0.4
2,190,027	+		DDA3937_RS09695	0.56	-0.8
2,190,027	+		DDA3937_RS09695	0.56	-2.6
2,190,027	+		DDA3937_RS09695	0.56	-2.0
2,190,027	+		DDA3937_RS09695	0.56	-1.1
2,190,027	+		DDA3937_RS09695	0.56	+0.7
2,190,028	-		DDA3937_RS09695	0.56	+1.4
2,190,028	-		DDA3937_RS09695	0.56	+1.2
2,190,028	-		DDA3937_RS09695	0.56	-0.6
2,190,085	+		DDA3937_RS09695	0.59	-0.6
2,190,100	-		DDA3937_RS09695	0.60	+0.7
2,190,165	+		DDA3937_RS09695	0.64	+2.1
2,190,165	+		DDA3937_RS09695	0.64	+1.7
2,190,165	+		DDA3937_RS09695	0.64	-1.1
2,190,165	+		DDA3937_RS09695	0.64	-1.0
2,190,166	-		DDA3937_RS09695	0.64	+0.6
2,190,193	+		DDA3937_RS09695	0.65	+1.2
2,190,287	-		DDA3937_RS09695	0.70	+2.1
2,190,381	-		DDA3937_RS09695	0.75	+0.4
2,190,381	-		DDA3937_RS09695	0.75	-0.1
2,190,410	+		DDA3937_RS09695	0.76	-0.9
2,190,424	-		DDA3937_RS09695	0.77	-0.5
2,190,493	-		DDA3937_RS09695	0.81	+0.7
2,190,652	+		DDA3937_RS09695	0.89	+1.1
2,190,653	-		DDA3937_RS09695	0.89	+0.1
2,190,653	-		DDA3937_RS09695	0.89	+1.8
2,190,751	+				-2.3
2,190,752	-				+0.7
2,190,772	-				-0.5
2,190,860	-				-0.9
2,190,872	+				-0.2
2,190,873	-				+1.7
2,190,873	-				-0.4
2,190,873	-				-2.3
2,190,873	-				+0.0
2,190,882	+				+0.3
2,190,883	-				+0.1
2,190,898	-				+0.8
2,190,898	-				+1.3
2,190,898	-				+0.4
2,190,905	+				+0.0
2,190,906	-				+2.4
2,190,906	-				+0.2
2,190,927	-				+3.6
2,190,939	+				+0.6
2,190,939	+				+0.0
2,190,944	-				+0.3
2,190,944	-				+0.1
2,190,944	-				+1.0
2,191,011	-				-0.3
2,191,011	-				+0.7
2,191,065	+		DDA3937_RS09700	0.12	+0.4
2,191,065	+		DDA3937_RS09700	0.12	-1.8
2,191,066	-		DDA3937_RS09700	0.12	-0.1
2,191,069	+		DDA3937_RS09700	0.12	-0.8
2,191,083	+		DDA3937_RS09700	0.14	+1.4
2,191,083	+		DDA3937_RS09700	0.14	-0.8
2,191,083	+		DDA3937_RS09700	0.14	+0.3
2,191,084	-		DDA3937_RS09700	0.15	-2.1
2,191,084	-		DDA3937_RS09700	0.15	-0.2
2,191,086	-		DDA3937_RS09700	0.15	-1.3
2,191,086	-		DDA3937_RS09700	0.15	-0.1
2,191,086	-		DDA3937_RS09700	0.15	-0.3
2,191,170	+		DDA3937_RS09700	0.28	-0.9
2,191,204	+		DDA3937_RS09700	0.33	-1.8
2,191,209	+		DDA3937_RS09700	0.34	+1.2
2,191,250	+		DDA3937_RS09700	0.41	-0.1
2,191,251	-				-1.6
2,191,254	+		DDA3937_RS09700	0.41	+1.0
2,191,254	+		DDA3937_RS09700	0.41	-1.2
2,191,262	+		DDA3937_RS09700	0.43	+2.4
2,191,266	+		DDA3937_RS09700	0.43	-2.2
2,191,266	+		DDA3937_RS09700	0.43	+0.0
2,191,266	+		DDA3937_RS09700	0.43	-1.3
2,191,267	-		DDA3937_RS09700	0.43	+1.9
2,191,267	-		DDA3937_RS09700	0.43	-0.2
2,191,267	-		DDA3937_RS09700	0.43	-0.5
2,191,269	-		DDA3937_RS09700	0.44	+0.5
2,191,278	+				+1.0
2,191,278	+				+1.8
2,191,279	-		DDA3937_RS09700	0.45	-0.2
2,191,279	-		DDA3937_RS09700	0.45	-0.3
2,191,279	-		DDA3937_RS09700	0.45	-0.8
2,191,279	-		DDA3937_RS09700	0.45	-0.9
2,191,279	-		DDA3937_RS09700	0.45	-1.1
2,191,320	+		DDA3937_RS09700	0.52	-1.0
2,191,320	+		DDA3937_RS09700	0.52	-0.9
2,191,320	+		DDA3937_RS09700	0.52	-1.2
2,191,321	-		DDA3937_RS09700	0.52	+3.2
2,191,321	-		DDA3937_RS09700	0.52	-1.6
2,191,321	-		DDA3937_RS09700	0.52	+0.4
2,191,321	-				+2.0
2,191,322	+		DDA3937_RS09700	0.52	-1.6
2,191,322	+		DDA3937_RS09700	0.52	-1.7
2,191,322	+		DDA3937_RS09700	0.52	-1.3
2,191,322	+		DDA3937_RS09700	0.52	+0.2
2,191,322	+		DDA3937_RS09700	0.52	-1.0
2,191,323	-		DDA3937_RS09700	0.52	-1.0
2,191,323	-		DDA3937_RS09700	0.52	+0.7
2,191,323	-		DDA3937_RS09700	0.52	-2.4
2,191,323	-		DDA3937_RS09700	0.52	-0.3
2,191,346	+		DDA3937_RS09700	0.56	-2.3
2,191,363	-		DDA3937_RS09700	0.58	-1.4
2,191,376	+		DDA3937_RS09700	0.61	-0.3
2,191,376	+		DDA3937_RS09700	0.61	-1.8
2,191,376	+		DDA3937_RS09700	0.61	-1.2
2,191,376	+		DDA3937_RS09700	0.61	-2.3
2,191,377	-		DDA3937_RS09700	0.61	-0.8
2,191,377	-		DDA3937_RS09700	0.61	-0.5
2,191,377	-		DDA3937_RS09700	0.61	+4.2
2,191,377	-				+0.0
2,191,377	-		DDA3937_RS09700	0.61	-0.3
2,191,377	-		DDA3937_RS09700	0.61	+0.4
2,191,377	-		DDA3937_RS09700	0.61	-0.3
2,191,377	-		DDA3937_RS09700	0.61	+0.5
2,191,377	-		DDA3937_RS09700	0.61	-1.4
2,191,377	-		DDA3937_RS09700	0.61	+0.8
2,191,377	-		DDA3937_RS09700	0.61	-0.6
2,191,377	-		DDA3937_RS09700	0.61	-2.7
2,191,431	+		DDA3937_RS09700	0.69	-2.7
2,191,431	+		DDA3937_RS09700	0.69	-1.2
2,191,431	+				+1.0
2,191,432	-		DDA3937_RS09700	0.69	-0.2
2,191,463	-		DDA3937_RS09700	0.74	+0.4
2,191,478	+		DDA3937_RS09700	0.77	-0.2
2,191,478	+		DDA3937_RS09700	0.77	-1.3
2,191,479	-		DDA3937_RS09700	0.77	-0.2
2,191,479	-		DDA3937_RS09700	0.77	-0.1
2,191,479	-		DDA3937_RS09700	0.77	-0.3
2,191,497	+		DDA3937_RS09700	0.80	+0.4
2,191,501	-		DDA3937_RS09700	0.80	+0.2
2,191,589	-				-0.5
2,191,604	+				-0.8
2,191,604	+				+0.9
2,191,604	+				-0.4
2,191,627	-				-0.2
2,191,656	+				-0.8
2,191,738	-				-0.6
2,191,738	-				+0.8