Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09650

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,175,326	+		DDA3937_RS09645	0.60	+0.6
2,175,326	+		DDA3937_RS09645	0.60	+0.6
2,175,326	+		DDA3937_RS09645	0.60	-0.4
2,175,489	+		DDA3937_RS09645	0.78	-0.1
2,175,490	-		DDA3937_RS09645	0.78	+0.8
2,175,490	-		DDA3937_RS09645	0.78	-0.3
2,175,490	-		DDA3937_RS09645	0.78	+0.3
2,175,580	-				+0.0
2,175,587	+		DDA3937_RS09645	0.88	-0.1
2,175,587	+		DDA3937_RS09645	0.88	-0.6
2,175,588	-		DDA3937_RS09645	0.88	-0.6
2,175,588	-		DDA3937_RS09645	0.88	-0.4
2,175,588	-		DDA3937_RS09645	0.88	-0.1
2,175,588	-		DDA3937_RS09645	0.88	-0.1
2,175,659	+				-1.0
2,175,660	-				+1.0
2,175,660	-				-0.6
2,175,721	-				+0.4
2,175,737	-				+0.4
2,175,737	-				-0.7
2,175,767	+				+2.6
2,175,767	+				-1.6
2,175,767	+				-0.3
2,175,768	-				-1.4
2,175,779	-				+1.0
2,175,779	-				-0.1
2,175,810	+				+3.2
2,175,824	+				-1.7
2,175,825	-				-2.0
2,175,825	-				+0.0
2,175,825	-				-2.5
2,175,834	+				+0.7
2,175,835	-				-0.5
2,175,835	-				+0.7
2,175,835	-				+0.4
2,175,835	-				-0.2
2,175,835	-				-1.6
2,175,835	-				+0.0
2,175,835	-				-0.3
2,175,835	-				-0.2
2,175,863	-				-1.8
2,175,881	+				+0.4
2,175,883	+				-0.8
2,175,883	+				+1.0
2,175,883	+				-1.3
2,175,883	+				-0.4
2,175,883	+				+0.0
2,175,883	+				-0.3
2,175,884	-				-1.6
2,175,884	-				-0.2
2,175,886	+				-1.0
2,175,886	+				+0.5
2,175,886	+				+1.1
2,175,886	+				+1.0
2,175,886	+				-2.0
2,175,887	-				-1.1
2,175,887	-				-0.9
2,175,887	-				+0.6
2,175,887	-				+0.7
2,175,887	-				-0.8
2,175,898	+				-1.9
2,175,898	+				+0.2
2,175,900	+				-1.5
2,175,900	+				+0.3
2,175,900	+				+0.2
2,175,900	+				-0.8
2,175,900	+				+1.0
2,175,901	-				-1.6
2,175,901	-				+0.6
2,175,901	-				-0.6
2,175,901	-				-1.6
2,175,903	+				-0.6
2,175,903	+				+2.3
2,175,903	+				-0.9
2,175,903	+				-1.0
2,175,903	+				+1.4
2,175,903	+				-1.1
2,175,903	+				+0.2
2,175,903	+				-1.7
2,175,903	+				+0.1
2,175,903	+				-0.0
2,175,904	-				-0.9
2,175,904	-				+0.1
2,175,905	-				-0.5
2,175,907	+				-1.0
2,175,907	+				+0.3
2,175,907	+				-0.1
2,175,907	+				-1.0
2,175,913	+				-1.1
2,175,913	+				-0.6
2,175,913	+				-1.6
2,175,913	+				-1.6
2,175,914	-				+0.9
2,175,981	+				+0.6
2,175,986	+				+0.6
2,176,023	+				-1.3
2,176,023	+				+0.5
2,176,023	+				-1.2
2,176,024	-				+0.1
2,176,024	-				-1.9
2,176,061	+				+0.3
2,176,061	+				+0.1
2,176,061	+				+0.0
2,176,061	+				-0.2
2,176,061	+				-0.2
2,176,061	+				-0.9
2,176,061	+				-1.3
2,176,061	+				+0.3
2,176,061	+				+0.1
2,176,061	+				+0.5
2,176,061	+				-2.5
2,176,061	+				+0.3
2,176,061	+				-1.3
2,176,061	+				+0.2
2,176,061	+				+1.0
2,176,062	-				+1.3
2,176,062	-				-0.6
2,176,062	-				-1.4
2,176,062	-				-2.9
2,176,062	-				-1.8
2,176,062	-				+2.8
2,176,062	-				-0.8
2,176,062	-				+1.0
2,176,062	-				-0.1
2,176,064	+				-0.2
2,176,064	+				+0.4
2,176,064	+				-0.8
2,176,064	+				-0.2
2,176,065	-				-2.0
2,176,065	-				+3.2
2,176,065	-				-1.6
2,176,089	-				-0.6
2,176,098	+				+1.3
2,176,103	+				-0.7
2,176,204	-				-0.3
2,176,225	-				+0.5
2,176,233	+				-0.6
2,176,296	-				-1.3
2,176,296	-				+0.2
2,176,298	+				+0.4
2,176,298	+				+0.6
2,176,298	+				-2.5
2,176,298	+				+0.5
2,176,298	+				-2.8
2,176,299	-				+0.0
2,176,299	-				-0.4
2,176,316	+				-1.1
2,176,317	-				-0.3
2,176,317	-				-0.5
2,176,329	+				-2.2
2,176,330	-				-2.0
2,176,386	-		DDA3937_RS09650	0.12	+1.2
2,176,471	-		DDA3937_RS09650	0.24	-2.0
2,176,532	+		DDA3937_RS09650	0.32	-2.2
2,176,555	-		DDA3937_RS09650	0.35	-1.1
2,176,555	-		DDA3937_RS09650	0.35	-2.2
2,176,587	+		DDA3937_RS09650	0.40	-0.5
2,176,596	+		DDA3937_RS09650	0.41	-0.3
2,176,596	+		DDA3937_RS09650	0.41	-2.0
2,176,596	+		DDA3937_RS09650	0.41	-1.7
2,176,596	+		DDA3937_RS09650	0.41	-2.5
2,176,596	+		DDA3937_RS09650	0.41	-0.9
2,176,596	+		DDA3937_RS09650	0.41	+1.6
2,176,597	-		DDA3937_RS09650	0.41	-3.3
2,176,597	-		DDA3937_RS09650	0.41	-1.3
2,176,597	-		DDA3937_RS09650	0.41	-3.2
2,176,597	-		DDA3937_RS09650	0.41	-0.3
2,176,601	-		DDA3937_RS09650	0.41	-0.6
2,176,642	-		DDA3937_RS09650	0.47	-1.6
2,176,731	+		DDA3937_RS09650	0.59	-1.5
2,176,731	+		DDA3937_RS09650	0.59	-1.0
2,176,732	-		DDA3937_RS09650	0.59	-1.6
2,176,732	-		DDA3937_RS09650	0.59	+1.5
2,176,734	+		DDA3937_RS09650	0.59	-0.6
2,176,735	-		DDA3937_RS09650	0.60	-1.7
2,176,737	+		DDA3937_RS09650	0.60	-2.5
2,176,737	+		DDA3937_RS09650	0.60	-0.2
2,176,737	+		DDA3937_RS09650	0.60	+0.4
2,176,737	+		DDA3937_RS09650	0.60	+0.2
2,176,738	-		DDA3937_RS09650	0.60	-3.2
2,176,738	-		DDA3937_RS09650	0.60	-1.1
2,176,738	-		DDA3937_RS09650	0.60	-1.7
2,176,738	-		DDA3937_RS09650	0.60	-1.0
2,176,836	+		DDA3937_RS09650	0.73	-2.6
2,176,847	+		DDA3937_RS09650	0.75	-0.9
2,176,847	+		DDA3937_RS09650	0.75	-2.2
2,176,848	-		DDA3937_RS09650	0.75	+0.0
2,176,848	-		DDA3937_RS09650	0.75	+0.6
2,176,877	-		DDA3937_RS09650	0.79	-2.6
2,176,877	-		DDA3937_RS09650	0.79	-1.6
2,176,902	+				-1.6
2,176,928	+				+1.0
2,176,987	+				-2.0
2,176,988	-				-1.1
2,176,988	-				-2.8
2,177,025	+				+2.0
2,177,026	-				-3.3
2,177,064	+				-1.1
2,177,124	-				+1.0
2,177,283	-				-1.0
2,177,310	+				-1.5
2,177,311	-				-1.6
2,177,337	+				-0.2
2,177,337	+				-1.8
2,177,337	+				+0.2
2,177,337	+				+0.0
2,177,337	+				-0.6
2,177,337	+				-1.2
2,177,338	-				-1.0
2,177,338	-				+0.1
2,177,338	-				-2.7
2,177,338	-				-0.0
2,177,338	-				-2.7
2,177,338	-				-0.2
2,177,338	-				+0.7
2,177,338	-				-1.0
2,177,338	-				-2.2
2,177,338	-				-1.6
2,177,338	-				+0.1
2,177,341	+				-1.3
2,177,341	+				-0.8
2,177,342	-				+0.0
2,177,342	-				-0.3
2,177,342	-				+0.5
2,177,342	-				-0.3
2,177,361	-				-0.6
2,177,447	-				-0.3
2,177,545	+				-1.6
2,177,545	+				-1.1
2,177,546	-				-2.6
2,177,546	-				-0.6
2,177,546	-				-0.2
2,177,546	-				-0.8
2,177,546	-				-1.1
2,177,576	+		DDA3937_RS09655	0.10	-3.5
2,177,576	+		DDA3937_RS09655	0.10	-1.1
2,177,576	+		DDA3937_RS09655	0.10	-1.3
2,177,595	-		DDA3937_RS09655	0.11	-1.0
2,177,626	+		DDA3937_RS09655	0.13	+0.0
2,177,627	-		DDA3937_RS09655	0.13	-2.6
2,177,633	+		DDA3937_RS09655	0.13	-2.3
2,177,633	+		DDA3937_RS09655	0.13	-0.2
2,177,634	-		DDA3937_RS09655	0.13	+0.3
2,177,634	-		DDA3937_RS09655	0.13	-1.6
2,177,765	+		DDA3937_RS09655	0.19	-2.5
2,177,766	-		DDA3937_RS09655	0.19	+0.4
2,177,785	+		DDA3937_RS09655	0.19	+0.6
2,177,785	+		DDA3937_RS09655	0.19	-2.2
2,177,785	+		DDA3937_RS09655	0.19	-1.5
2,177,785	+		DDA3937_RS09655	0.19	-0.6
2,177,785	+		DDA3937_RS09655	0.19	-3.8
2,177,785	+		DDA3937_RS09655	0.19	-1.3
2,177,785	+		DDA3937_RS09655	0.19	-0.5
2,177,786	-		DDA3937_RS09655	0.20	-2.2
2,177,787	+		DDA3937_RS09655	0.20	-2.1
2,177,787	+		DDA3937_RS09655	0.20	-2.4
2,177,788	-		DDA3937_RS09655	0.20	+0.4
2,177,828	+		DDA3937_RS09655	0.21	-1.8
2,177,828	+		DDA3937_RS09655	0.21	-1.0
2,177,828	+		DDA3937_RS09655	0.21	-0.4
2,177,839	+		DDA3937_RS09655	0.22	-1.0
2,177,839	+		DDA3937_RS09655	0.22	-2.0
2,177,839	+		DDA3937_RS09655	0.22	-1.0
2,177,840	-		DDA3937_RS09655	0.22	-2.2
2,177,843	+		DDA3937_RS09655	0.22	+0.2
2,177,844	-				+0.0
2,177,999	-				-0.6
2,177,999	-		DDA3937_RS09655	0.29	-2.3