Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08840

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,996,793	-		DDA3937_RS08830	0.71	-3.5
1,996,793	-		DDA3937_RS08830	0.71	+0.2
1,996,793	-		DDA3937_RS08830	0.71	+0.7
1,996,793	-		DDA3937_RS08830	0.71	+1.2
1,996,873	-		DDA3937_RS08830	0.77	-0.5
1,996,902	+		DDA3937_RS08830	0.79	-0.0
1,996,902	+		DDA3937_RS08830	0.79	+1.5
1,996,902	+		DDA3937_RS08830	0.79	-1.9
1,996,902	+		DDA3937_RS08830	0.79	+0.3
1,996,902	+		DDA3937_RS08830	0.79	-1.4
1,996,902	+		DDA3937_RS08830	0.79	-1.4
1,996,902	+		DDA3937_RS08830	0.79	+0.5
1,996,902	+		DDA3937_RS08830	0.79	+0.3
1,996,902	+		DDA3937_RS08830	0.79	-1.2
1,996,902	+		DDA3937_RS08830	0.79	-0.5
1,996,902	+		DDA3937_RS08830	0.79	+1.1
1,996,902	+		DDA3937_RS08830	0.79	-2.1
1,996,902	+		DDA3937_RS08830	0.79	+0.7
1,996,903	-		DDA3937_RS08830	0.80	+0.0
1,996,903	-		DDA3937_RS08830	0.80	-0.7
1,996,903	-		DDA3937_RS08830	0.80	+0.9
1,996,903	-		DDA3937_RS08830	0.80	-0.0
1,996,904	+		DDA3937_RS08830	0.80	-0.9
1,996,904	+		DDA3937_RS08830	0.80	+0.2
1,997,142	+				+0.1
1,997,165	+				+0.1
1,997,165	+				-1.6
1,997,166	-				-1.2
1,997,166	-				-2.6
1,997,166	-				-0.4
1,997,166	-				-0.9
1,997,166	-				+0.5
1,997,302	+		DDA3937_RS08835	0.20	+0.7
1,997,302	+		DDA3937_RS08835	0.20	-0.9
1,997,302	+		DDA3937_RS08835	0.20	-0.6
1,997,303	-		DDA3937_RS08835	0.21	-0.1
1,997,303	-		DDA3937_RS08835	0.21	-1.3
1,997,303	-		DDA3937_RS08835	0.21	+1.0
1,997,306	+		DDA3937_RS08835	0.21	-1.8
1,997,307	-		DDA3937_RS08835	0.21	+0.9
1,997,321	-		DDA3937_RS08835	0.24	-0.3
1,997,466	+		DDA3937_RS08835	0.54	-0.2
1,997,466	+		DDA3937_RS08835	0.54	+0.2
1,997,466	+		DDA3937_RS08835	0.54	+1.5
1,997,466	+		DDA3937_RS08835	0.54	+0.5
1,997,467	-		DDA3937_RS08835	0.54	-0.2
1,997,467	-		DDA3937_RS08835	0.54	+0.1
1,997,557	+		DDA3937_RS08835	0.72	-2.2
1,997,561	+		DDA3937_RS08835	0.73	+0.3
1,997,561	+		DDA3937_RS08835	0.73	-0.3
1,997,561	+		DDA3937_RS08835	0.73	-0.1
1,997,561	+		DDA3937_RS08835	0.73	+0.6
1,997,562	-		DDA3937_RS08835	0.73	-0.3
1,997,562	-		DDA3937_RS08835	0.73	-2.1
1,997,562	-		DDA3937_RS08835	0.73	+1.8
1,997,562	-		DDA3937_RS08835	0.73	-1.0
1,997,562	-		DDA3937_RS08835	0.73	+0.7
1,997,562	-		DDA3937_RS08835	0.73	-0.9
1,997,670	+				+0.6
1,997,670	+				+1.8
1,997,671	-				-1.4
1,997,695	+				-0.9
1,997,695	+				-0.1
1,997,696	-				+1.2
1,997,696	-				-1.1
1,997,696	-				-0.6
1,997,702	-				+1.7
1,997,707	-				+0.6
1,997,737	+				-2.6
1,997,782	+				+0.1
1,997,782	+				-2.0
1,997,782	+				-0.5
1,997,783	-				-0.6
1,997,792	+				+2.0
1,997,944	+		DDA3937_RS08840	0.13	+0.1
1,997,944	+		DDA3937_RS08840	0.13	-3.2
1,997,945	-		DDA3937_RS08840	0.13	-0.0
1,997,945	-		DDA3937_RS08840	0.13	-1.0
1,997,945	-		DDA3937_RS08840	0.13	-2.1
1,997,945	-		DDA3937_RS08840	0.13	+0.1
1,997,951	+		DDA3937_RS08840	0.13	+0.7
1,997,988	+		DDA3937_RS08840	0.16	+0.7
1,998,021	+		DDA3937_RS08840	0.19	-0.9
1,998,101	-		DDA3937_RS08840	0.26	+0.3
1,998,173	+		DDA3937_RS08840	0.32	-1.2
1,998,174	-		DDA3937_RS08840	0.32	+0.3
1,998,174	-		DDA3937_RS08840	0.32	-1.0
1,998,200	+		DDA3937_RS08840	0.34	-0.8
1,998,210	+		DDA3937_RS08840	0.35	-0.7
1,998,210	+		DDA3937_RS08840	0.35	-1.5
1,998,210	+		DDA3937_RS08840	0.35	-1.2
1,998,254	+		DDA3937_RS08840	0.39	-0.7
1,998,332	-		DDA3937_RS08840	0.46	-0.2
1,998,344	+		DDA3937_RS08840	0.47	+0.7
1,998,461	+		DDA3937_RS08840	0.57	-0.5
1,998,461	+		DDA3937_RS08840	0.57	-0.3
1,998,490	-		DDA3937_RS08840	0.59	-0.3
1,998,492	+		DDA3937_RS08840	0.59	+0.3
1,998,492	+		DDA3937_RS08840	0.59	-0.8
1,998,493	-		DDA3937_RS08840	0.59	+0.1
1,998,612	+		DDA3937_RS08840	0.69	-0.3
1,998,629	-		DDA3937_RS08840	0.71	-0.5
1,998,635	-		DDA3937_RS08840	0.71	+2.9
1,998,665	-		DDA3937_RS08840	0.74	-1.9
1,998,728	-		DDA3937_RS08840	0.79	-0.1
1,998,728	-		DDA3937_RS08840	0.79	-0.6
1,998,802	+		DDA3937_RS08840	0.85	-0.7
1,998,802	+		DDA3937_RS08840	0.85	-0.2
1,998,802	+		DDA3937_RS08840	0.85	-0.9
1,998,802	+		DDA3937_RS08840	0.85	+0.3
1,998,803	-		DDA3937_RS08840	0.85	+2.1
1,998,803	-		DDA3937_RS08840	0.85	-2.7
1,998,864	+				-2.2
1,998,865	-				+0.2
1,998,916	+				-2.8
1,998,916	+				-0.2
1,999,021	-				+0.1
1,999,066	-				+1.1
1,999,198	+		DDA3937_RS08845	0.25	-0.1
1,999,199	-		DDA3937_RS08845	0.25	-0.6
1,999,199	-		DDA3937_RS08845	0.25	-1.3
1,999,199	-		DDA3937_RS08845	0.25	+0.1
1,999,295	+		DDA3937_RS08845	0.35	-2.2
1,999,310	-		DDA3937_RS08845	0.37	+0.1
1,999,399	+		DDA3937_RS08845	0.47	-0.1
1,999,400	-		DDA3937_RS08845	0.47	-1.2
1,999,457	+		DDA3937_RS08845	0.53	+0.2
1,999,542	+		DDA3937_RS08845	0.62	+0.3
1,999,542	+		DDA3937_RS08845	0.62	+1.9
1,999,543	-		DDA3937_RS08845	0.63	+2.8
1,999,543	-		DDA3937_RS08845	0.63	-0.2
1,999,576	-		DDA3937_RS08845	0.66	-0.5
1,999,589	-		DDA3937_RS08845	0.68	-0.6
1,999,590	+		DDA3937_RS08845	0.68	-1.7
1,999,590	+		DDA3937_RS08845	0.68	-1.3
1,999,591	-		DDA3937_RS08845	0.68	-2.1
1,999,642	+		DDA3937_RS08845	0.73	-2.4
1,999,642	+		DDA3937_RS08845	0.73	-0.5
1,999,643	-		DDA3937_RS08845	0.73	-0.1
1,999,643	-		DDA3937_RS08845	0.73	-1.6
1,999,678	-		DDA3937_RS08845	0.77	+0.2
1,999,695	+		DDA3937_RS08845	0.79	-0.9
1,999,695	+		DDA3937_RS08845	0.79	-1.2
1,999,695	+		DDA3937_RS08845	0.79	+0.7
1,999,696	-		DDA3937_RS08845	0.79	-0.7
1,999,696	-		DDA3937_RS08845	0.79	-0.0
1,999,696	-		DDA3937_RS08845	0.79	-2.2
1,999,805	-				+0.7
1,999,860	+				-1.4
1,999,941	+				+0.3