Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08730 and DDA3937_RS08735 are separated by 254 nucleotides DDA3937_RS08735 and DDA3937_RS08740 are separated by 17 nucleotides DDA3937_RS08740 and DDA3937_RS08745 are separated by 174 nucleotides
DDA3937_RS08730: DDA3937_RS08730 - epoxyqueuosine reductase QueH, at 1,970,287 to 1,970,970
_RS08730
DDA3937_RS08735: DDA3937_RS08735 - D-alanyl-D-alanine endopeptidase, at 1,971,225 to 1,972,178
_RS08735
DDA3937_RS08740: DDA3937_RS08740 - glutathione S-transferase family protein, at 1,972,196 to 1,972,882
_RS08740
DDA3937_RS08745: DDA3937_RS08745 - DeoR/GlpR transcriptional regulator, at 1,973,057 to 1,973,833
_RS08745
Position (kb) 1971
1972
1973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1970.225 kb on + strand at 1970.225 kb on + strand at 1970.225 kb on + strand at 1970.225 kb on + strand at 1970.226 kb on - strand at 1970.226 kb on - strand at 1970.226 kb on - strand at 1970.226 kb on - strand at 1970.239 kb on + strand at 1970.240 kb on - strand at 1970.241 kb on + strand at 1970.241 kb on + strand at 1970.288 kb on + strand at 1970.288 kb on + strand at 1970.288 kb on + strand at 1970.292 kb on + strand at 1970.315 kb on + strand at 1970.315 kb on + strand at 1970.318 kb on + strand at 1970.319 kb on - strand at 1970.402 kb on + strand, within DDA3937_RS08730 at 1970.402 kb on + strand, within DDA3937_RS08730 at 1970.414 kb on + strand, within DDA3937_RS08730 at 1970.414 kb on + strand, within DDA3937_RS08730 at 1970.414 kb on + strand, within DDA3937_RS08730 at 1970.415 kb on - strand, within DDA3937_RS08730 at 1970.415 kb on - strand, within DDA3937_RS08730 at 1970.446 kb on - strand, within DDA3937_RS08730 at 1970.446 kb on - strand, within DDA3937_RS08730 at 1970.446 kb on - strand, within DDA3937_RS08730 at 1970.475 kb on + strand, within DDA3937_RS08730 at 1970.475 kb on + strand, within DDA3937_RS08730 at 1970.475 kb on + strand, within DDA3937_RS08730 at 1970.475 kb on + strand, within DDA3937_RS08730 at 1970.475 kb on + strand, within DDA3937_RS08730 at 1970.475 kb on + strand, within DDA3937_RS08730 at 1970.476 kb on - strand, within DDA3937_RS08730 at 1970.477 kb on + strand, within DDA3937_RS08730 at 1970.478 kb on - strand, within DDA3937_RS08730 at 1970.486 kb on + strand, within DDA3937_RS08730 at 1970.486 kb on + strand, within DDA3937_RS08730 at 1970.486 kb on + strand, within DDA3937_RS08730 at 1970.487 kb on - strand at 1970.487 kb on - strand, within DDA3937_RS08730 at 1970.606 kb on + strand, within DDA3937_RS08730 at 1970.606 kb on + strand, within DDA3937_RS08730 at 1970.607 kb on - strand, within DDA3937_RS08730 at 1970.646 kb on + strand, within DDA3937_RS08730 at 1970.647 kb on - strand, within DDA3937_RS08730 at 1970.647 kb on - strand, within DDA3937_RS08730 at 1970.647 kb on - strand, within DDA3937_RS08730 at 1970.647 kb on - strand, within DDA3937_RS08730 at 1970.679 kb on + strand, within DDA3937_RS08730 at 1970.714 kb on + strand, within DDA3937_RS08730 at 1970.714 kb on + strand, within DDA3937_RS08730 at 1970.715 kb on - strand, within DDA3937_RS08730 at 1970.783 kb on + strand, within DDA3937_RS08730 at 1970.813 kb on + strand, within DDA3937_RS08730 at 1970.814 kb on - strand, within DDA3937_RS08730 at 1970.814 kb on - strand, within DDA3937_RS08730 at 1970.814 kb on - strand, within DDA3937_RS08730 at 1970.828 kb on + strand, within DDA3937_RS08730 at 1970.828 kb on + strand, within DDA3937_RS08730 at 1970.829 kb on - strand, within DDA3937_RS08730 at 1970.829 kb on - strand, within DDA3937_RS08730 at 1970.829 kb on - strand, within DDA3937_RS08730 at 1970.829 kb on - strand, within DDA3937_RS08730 at 1970.829 kb on - strand, within DDA3937_RS08730 at 1971.169 kb on + strand at 1971.169 kb on + strand at 1971.169 kb on + strand at 1971.169 kb on + strand at 1971.170 kb on - strand at 1971.170 kb on - strand at 1971.170 kb on - strand at 1971.170 kb on - strand at 1971.170 kb on - strand at 1971.171 kb on + strand at 1971.172 kb on - strand at 1971.172 kb on - strand at 1971.172 kb on - strand at 1971.205 kb on - strand at 1971.253 kb on + strand at 1971.253 kb on + strand at 1971.253 kb on + strand at 1971.253 kb on + strand at 1971.254 kb on - strand at 1971.254 kb on - strand at 1971.254 kb on - strand at 1971.314 kb on + strand at 1971.376 kb on + strand, within DDA3937_RS08735 at 1971.377 kb on - strand, within DDA3937_RS08735 at 1971.377 kb on - strand, within DDA3937_RS08735 at 1971.377 kb on - strand, within DDA3937_RS08735 at 1971.380 kb on + strand, within DDA3937_RS08735 at 1971.380 kb on + strand, within DDA3937_RS08735 at 1971.381 kb on - strand, within DDA3937_RS08735 at 1971.381 kb on - strand, within DDA3937_RS08735 at 1971.381 kb on - strand, within DDA3937_RS08735 at 1971.383 kb on + strand, within DDA3937_RS08735 at 1971.384 kb on - strand, within DDA3937_RS08735 at 1971.384 kb on - strand, within DDA3937_RS08735 at 1971.397 kb on - strand, within DDA3937_RS08735 at 1971.415 kb on + strand, within DDA3937_RS08735 at 1971.415 kb on + strand, within DDA3937_RS08735 at 1971.416 kb on - strand, within DDA3937_RS08735 at 1971.416 kb on - strand, within DDA3937_RS08735 at 1971.473 kb on + strand, within DDA3937_RS08735 at 1971.538 kb on - strand, within DDA3937_RS08735 at 1971.714 kb on + strand, within DDA3937_RS08735 at 1971.895 kb on - strand, within DDA3937_RS08735 at 1972.107 kb on + strand at 1972.108 kb on - strand at 1972.221 kb on - strand at 1972.221 kb on - strand at 1972.221 kb on - strand at 1972.221 kb on - strand at 1972.221 kb on - strand at 1972.293 kb on + strand, within DDA3937_RS08740 at 1972.294 kb on - strand, within DDA3937_RS08740 at 1972.298 kb on + strand, within DDA3937_RS08740 at 1972.298 kb on + strand, within DDA3937_RS08740 at 1972.298 kb on + strand, within DDA3937_RS08740 at 1972.298 kb on + strand, within DDA3937_RS08740 at 1972.298 kb on + strand, within DDA3937_RS08740 at 1972.298 kb on + strand, within DDA3937_RS08740 at 1972.298 kb on + strand, within DDA3937_RS08740 at 1972.299 kb on - strand, within DDA3937_RS08740 at 1972.299 kb on - strand, within DDA3937_RS08740 at 1972.299 kb on - strand, within DDA3937_RS08740 at 1972.299 kb on - strand, within DDA3937_RS08740 at 1972.457 kb on + strand, within DDA3937_RS08740 at 1972.457 kb on + strand, within DDA3937_RS08740 at 1972.457 kb on + strand, within DDA3937_RS08740 at 1972.457 kb on + strand, within DDA3937_RS08740 at 1972.458 kb on - strand, within DDA3937_RS08740 at 1972.458 kb on - strand, within DDA3937_RS08740 at 1972.458 kb on - strand, within DDA3937_RS08740 at 1972.458 kb on - strand, within DDA3937_RS08740 at 1972.458 kb on - strand, within DDA3937_RS08740 at 1972.458 kb on - strand, within DDA3937_RS08740 at 1972.458 kb on - strand, within DDA3937_RS08740 at 1972.665 kb on + strand, within DDA3937_RS08740 at 1972.666 kb on - strand, within DDA3937_RS08740 at 1972.817 kb on + strand at 1972.818 kb on - strand at 1972.878 kb on + strand at 1972.878 kb on + strand at 1972.878 kb on + strand at 1972.879 kb on - strand at 1972.879 kb on - strand at 1972.879 kb on - strand at 1972.879 kb on - strand at 1972.879 kb on - strand at 1972.900 kb on + strand at 1972.900 kb on + strand at 1972.901 kb on - strand at 1972.901 kb on - strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.902 kb on + strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.903 kb on - strand at 1972.915 kb on + strand at 1972.915 kb on + strand at 1972.915 kb on + strand at 1972.916 kb on - strand at 1972.916 kb on - strand at 1972.916 kb on - strand at 1972.926 kb on + strand at 1972.952 kb on - strand at 1972.952 kb on - strand at 1972.982 kb on + strand at 1972.983 kb on - strand at 1972.991 kb on + strand at 1972.991 kb on + strand at 1972.991 kb on + strand at 1972.995 kb on + strand at 1972.995 kb on + strand at 1972.996 kb on - strand at 1972.996 kb on - strand at 1973.008 kb on + strand at 1973.008 kb on + strand at 1973.163 kb on + strand, within DDA3937_RS08745 at 1973.163 kb on + strand, within DDA3937_RS08745
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,970,225 + +1.1 1,970,225 + -1.1 1,970,225 + -1.9 1,970,225 + +2.8 1,970,226 - -0.5 1,970,226 - -1.9 1,970,226 - +0.3 1,970,226 - -0.5 1,970,239 + -1.0 1,970,240 - -0.9 1,970,241 + -0.1 1,970,241 + +0.5 1,970,288 + +0.8 1,970,288 + -0.7 1,970,288 + +1.8 1,970,292 + +1.8 1,970,315 + -0.3 1,970,315 + -0.9 1,970,318 + +0.1 1,970,319 - +1.8 1,970,402 + DDA3937_RS08730 0.17 +1.5 1,970,402 + DDA3937_RS08730 0.17 -2.4 1,970,414 + DDA3937_RS08730 0.19 +0.7 1,970,414 + DDA3937_RS08730 0.19 -1.6 1,970,414 + DDA3937_RS08730 0.19 -0.7 1,970,415 - DDA3937_RS08730 0.19 -0.9 1,970,415 - DDA3937_RS08730 0.19 -0.1 1,970,446 - DDA3937_RS08730 0.23 -0.7 1,970,446 - DDA3937_RS08730 0.23 +0.7 1,970,446 - DDA3937_RS08730 0.23 -0.1 1,970,475 + DDA3937_RS08730 0.27 -1.3 1,970,475 + DDA3937_RS08730 0.27 +0.5 1,970,475 + DDA3937_RS08730 0.27 -0.4 1,970,475 + DDA3937_RS08730 0.27 -0.9 1,970,475 + DDA3937_RS08730 0.27 -1.5 1,970,475 + DDA3937_RS08730 0.27 -0.7 1,970,476 - DDA3937_RS08730 0.28 +3.7 1,970,477 + DDA3937_RS08730 0.28 -0.1 1,970,478 - DDA3937_RS08730 0.28 -1.2 1,970,486 + DDA3937_RS08730 0.29 -1.2 1,970,486 + DDA3937_RS08730 0.29 -2.7 1,970,486 + DDA3937_RS08730 0.29 +2.0 1,970,487 - +1.1 1,970,487 - DDA3937_RS08730 0.29 -0.2 1,970,606 + DDA3937_RS08730 0.47 -0.5 1,970,606 + DDA3937_RS08730 0.47 +0.1 1,970,607 - DDA3937_RS08730 0.47 +0.1 1,970,646 + DDA3937_RS08730 0.52 +0.9 1,970,647 - DDA3937_RS08730 0.53 +0.1 1,970,647 - DDA3937_RS08730 0.53 -0.5 1,970,647 - DDA3937_RS08730 0.53 +3.2 1,970,647 - DDA3937_RS08730 0.53 +0.1 1,970,679 + DDA3937_RS08730 0.57 -0.9 1,970,714 + DDA3937_RS08730 0.62 -0.2 1,970,714 + DDA3937_RS08730 0.62 +1.1 1,970,715 - DDA3937_RS08730 0.63 +1.7 1,970,783 + DDA3937_RS08730 0.73 -0.2 1,970,813 + DDA3937_RS08730 0.77 +0.3 1,970,814 - DDA3937_RS08730 0.77 +1.4 1,970,814 - DDA3937_RS08730 0.77 -1.0 1,970,814 - DDA3937_RS08730 0.77 +0.1 1,970,828 + DDA3937_RS08730 0.79 -1.4 1,970,828 + DDA3937_RS08730 0.79 +1.1 1,970,829 - DDA3937_RS08730 0.79 +2.6 1,970,829 - DDA3937_RS08730 0.79 -1.5 1,970,829 - DDA3937_RS08730 0.79 -0.9 1,970,829 - DDA3937_RS08730 0.79 +0.3 1,970,829 - DDA3937_RS08730 0.79 -0.3 1,971,169 + +0.1 1,971,169 + +0.1 1,971,169 + +0.1 1,971,169 + -0.5 1,971,170 - +0.7 1,971,170 - -1.3 1,971,170 - -1.8 1,971,170 - +1.2 1,971,170 - +0.5 1,971,171 + -1.8 1,971,172 - +0.3 1,971,172 - -0.5 1,971,172 - -1.9 1,971,205 - -0.6 1,971,253 + -0.1 1,971,253 + -1.9 1,971,253 + +0.7 1,971,253 + -1.9 1,971,254 - +0.1 1,971,254 - -0.4 1,971,254 - -0.7 1,971,314 + -2.2 1,971,376 + DDA3937_RS08735 0.16 -1.1 1,971,377 - DDA3937_RS08735 0.16 -0.7 1,971,377 - DDA3937_RS08735 0.16 -1.5 1,971,377 - DDA3937_RS08735 0.16 -0.9 1,971,380 + DDA3937_RS08735 0.16 +0.2 1,971,380 + DDA3937_RS08735 0.16 -1.5 1,971,381 - DDA3937_RS08735 0.16 -2.9 1,971,381 - DDA3937_RS08735 0.16 -1.5 1,971,381 - DDA3937_RS08735 0.16 -0.3 1,971,383 + DDA3937_RS08735 0.17 +1.1 1,971,384 - DDA3937_RS08735 0.17 +1.1 1,971,384 - DDA3937_RS08735 0.17 -1.9 1,971,397 - DDA3937_RS08735 0.18 -0.5 1,971,415 + DDA3937_RS08735 0.20 -0.6 1,971,415 + DDA3937_RS08735 0.20 +0.5 1,971,416 - DDA3937_RS08735 0.20 -2.2 1,971,416 - DDA3937_RS08735 0.20 -1.4 1,971,473 + DDA3937_RS08735 0.26 -1.8 1,971,538 - DDA3937_RS08735 0.33 -2.0 1,971,714 + DDA3937_RS08735 0.51 -1.9 1,971,895 - DDA3937_RS08735 0.70 -0.6 1,972,107 + -3.0 1,972,108 - +0.6 1,972,221 - +0.1 1,972,221 - -0.5 1,972,221 - +1.4 1,972,221 - +0.3 1,972,221 - +0.7 1,972,293 + DDA3937_RS08740 0.14 +0.2 1,972,294 - DDA3937_RS08740 0.14 -0.7 1,972,298 + DDA3937_RS08740 0.15 +0.1 1,972,298 + DDA3937_RS08740 0.15 +0.3 1,972,298 + DDA3937_RS08740 0.15 -1.0 1,972,298 + DDA3937_RS08740 0.15 -1.2 1,972,298 + DDA3937_RS08740 0.15 -1.2 1,972,298 + DDA3937_RS08740 0.15 +2.9 1,972,298 + DDA3937_RS08740 0.15 -2.3 1,972,299 - DDA3937_RS08740 0.15 -0.1 1,972,299 - DDA3937_RS08740 0.15 -0.5 1,972,299 - DDA3937_RS08740 0.15 -1.0 1,972,299 - DDA3937_RS08740 0.15 -0.4 1,972,457 + DDA3937_RS08740 0.38 -0.3 1,972,457 + DDA3937_RS08740 0.38 +1.4 1,972,457 + DDA3937_RS08740 0.38 -0.3 1,972,457 + DDA3937_RS08740 0.38 -0.7 1,972,458 - DDA3937_RS08740 0.38 -0.8 1,972,458 - DDA3937_RS08740 0.38 +0.9 1,972,458 - DDA3937_RS08740 0.38 -0.5 1,972,458 - DDA3937_RS08740 0.38 -0.4 1,972,458 - DDA3937_RS08740 0.38 -1.6 1,972,458 - DDA3937_RS08740 0.38 +1.3 1,972,458 - DDA3937_RS08740 0.38 -2.6 1,972,665 + DDA3937_RS08740 0.68 -1.4 1,972,666 - DDA3937_RS08740 0.68 -0.4 1,972,817 + -0.4 1,972,818 - +0.2 1,972,878 + +0.3 1,972,878 + +0.8 1,972,878 + -1.9 1,972,879 - +0.3 1,972,879 - -0.5 1,972,879 - -1.3 1,972,879 - -2.7 1,972,879 - +1.7 1,972,900 + -2.0 1,972,900 + +0.2 1,972,901 - +0.1 1,972,901 - +0.0 1,972,902 + -0.1 1,972,902 + -0.7 1,972,902 + -0.5 1,972,902 + +2.1 1,972,902 + -0.6 1,972,902 + +0.4 1,972,902 + +0.5 1,972,902 + -2.0 1,972,902 + +1.3 1,972,902 + +0.5 1,972,902 + +0.3 1,972,902 + +1.8 1,972,902 + -1.4 1,972,902 + -2.2 1,972,902 + +0.4 1,972,902 + +1.7 1,972,902 + -0.6 1,972,903 - -2.6 1,972,903 - -0.1 1,972,903 - +1.1 1,972,903 - -0.2 1,972,903 - -0.1 1,972,903 - -1.0 1,972,903 - +0.4 1,972,903 - -1.4 1,972,903 - -0.5 1,972,903 - +1.0 1,972,903 - -2.4 1,972,903 - +0.4 1,972,915 + -1.4 1,972,915 + -1.5 1,972,915 + +0.4 1,972,916 - -0.0 1,972,916 - -1.1 1,972,916 - -1.7 1,972,926 + +0.1 1,972,952 - +1.4 1,972,952 - -1.4 1,972,982 + -0.4 1,972,983 - -0.8 1,972,991 + +2.1 1,972,991 + -0.9 1,972,991 + +0.3 1,972,995 + +1.1 1,972,995 + +0.8 1,972,996 - -0.9 1,972,996 - +0.8 1,973,008 + +0.7 1,973,008 + -1.6 1,973,163 + DDA3937_RS08745 0.14 +0.4 1,973,163 + DDA3937_RS08745 0.14 -0.2
Or see this region's nucleotide sequence