Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07190

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,619,121	+		DDA3937_RS07185	0.21	-0.3
1,619,122	-		DDA3937_RS07185	0.22	-2.1
1,619,122	-		DDA3937_RS07185	0.22	+0.2
1,619,122	-		DDA3937_RS07185	0.22	-2.1
1,619,187	+		DDA3937_RS07185	0.30	+1.8
1,619,188	-		DDA3937_RS07185	0.30	+2.7
1,619,228	-		DDA3937_RS07185	0.35	-1.5
1,619,266	-		DDA3937_RS07185	0.40	+1.6
1,619,286	+		DDA3937_RS07185	0.43	+1.0
1,619,287	-		DDA3937_RS07185	0.43	-1.8
1,619,311	+		DDA3937_RS07185	0.46	+0.7
1,619,311	+		DDA3937_RS07185	0.46	-1.0
1,619,311	+		DDA3937_RS07185	0.46	+0.6
1,619,311	+		DDA3937_RS07185	0.46	+0.8
1,619,311	+		DDA3937_RS07185	0.46	-0.5
1,619,311	+		DDA3937_RS07185	0.46	-0.6
1,619,311	+		DDA3937_RS07185	0.46	-2.1
1,619,311	+		DDA3937_RS07185	0.46	-0.8
1,619,311	+		DDA3937_RS07185	0.46	+0.6
1,619,311	+		DDA3937_RS07185	0.46	-0.7
1,619,311	+		DDA3937_RS07185	0.46	+0.2
1,619,311	+		DDA3937_RS07185	0.46	-0.9
1,619,312	-		DDA3937_RS07185	0.46	+0.2
1,619,312	-		DDA3937_RS07185	0.46	+0.9
1,619,312	-		DDA3937_RS07185	0.46	-1.1
1,619,312	-		DDA3937_RS07185	0.46	-0.2
1,619,312	-		DDA3937_RS07185	0.46	+1.0
1,619,314	+		DDA3937_RS07185	0.47	-0.3
1,619,314	+		DDA3937_RS07185	0.47	+0.1
1,619,315	-		DDA3937_RS07185	0.47	+0.3
1,619,315	-		DDA3937_RS07185	0.47	-0.2
1,619,315	-		DDA3937_RS07185	0.47	+0.2
1,619,315	-		DDA3937_RS07185	0.47	-2.5
1,619,364	-		DDA3937_RS07185	0.53	-1.4
1,619,364	-		DDA3937_RS07185	0.53	-0.5
1,619,366	+		DDA3937_RS07185	0.53	+1.4
1,619,367	-		DDA3937_RS07185	0.54	-0.8
1,619,378	-		DDA3937_RS07185	0.55	-0.3
1,619,410	-		DDA3937_RS07185	0.59	-2.7
1,619,548	+		DDA3937_RS07185	0.77	+1.4
1,619,548	+		DDA3937_RS07185	0.77	+1.2
1,619,549	-		DDA3937_RS07185	0.77	+0.8
1,619,549	-		DDA3937_RS07185	0.77	-0.8
1,619,549	-		DDA3937_RS07185	0.77	-0.5
1,619,549	-		DDA3937_RS07185	0.77	-0.1
1,619,564	-		DDA3937_RS07185	0.79	-2.6
1,619,719	+				-1.1
1,619,742	+				-1.8
1,619,807	-				-0.0
1,619,815	+				-1.8
1,619,815	+				-2.6
1,619,815	+				-0.1
1,619,815	+				+0.7
1,619,815	+				-0.2
1,619,818	+				-0.6
1,619,818	+				+1.6
1,619,818	+				-0.1
1,619,819	-				-0.6
1,619,853	-				-1.8
1,620,009	-				-0.4
1,620,044	+				-2.3
1,620,044	+				-1.2
1,620,044	+				-2.7
1,620,044	+				-0.3
1,620,044	+				+1.1
1,620,045	-				-0.1
1,620,045	-				-2.7
1,620,045	-				+0.4
1,620,045	-				+0.5
1,620,045	-				+2.9
1,620,064	-				-1.8
1,620,100	-				-1.3
1,620,109	-				+0.1
1,620,109	-				+1.1
1,620,465	-		DDA3937_RS07190	0.25	+0.3
1,620,465	-		DDA3937_RS07190	0.25	-3.1
1,620,601	+		DDA3937_RS07190	0.33	+0.4
1,620,601	+		DDA3937_RS07190	0.33	-1.1
1,620,601	+		DDA3937_RS07190	0.33	+0.1
1,620,601	+		DDA3937_RS07190	0.33	+1.8
1,620,601	+		DDA3937_RS07190	0.33	-2.7
1,620,601	+		DDA3937_RS07190	0.33	-0.4
1,620,601	+		DDA3937_RS07190	0.33	-0.9
1,620,601	+		DDA3937_RS07190	0.33	-1.6
1,620,601	+		DDA3937_RS07190	0.33	-0.4
1,620,601	+		DDA3937_RS07190	0.33	-1.4
1,620,602	-		DDA3937_RS07190	0.33	+0.1
1,620,602	-		DDA3937_RS07190	0.33	-1.0
1,620,602	-		DDA3937_RS07190	0.33	-0.3
1,620,602	-		DDA3937_RS07190	0.33	+1.5
1,620,602	-		DDA3937_RS07190	0.33	-0.7
1,620,602	-		DDA3937_RS07190	0.33	+0.5
1,620,602	-		DDA3937_RS07190	0.33	-1.3
1,620,602	-		DDA3937_RS07190	0.33	-0.9
1,620,602	-		DDA3937_RS07190	0.33	+1.5
1,620,603	+		DDA3937_RS07190	0.33	+0.3
1,620,603	+		DDA3937_RS07190	0.33	-0.2
1,620,603	+		DDA3937_RS07190	0.33	-1.9
1,620,628	+		DDA3937_RS07190	0.35	-0.7
1,620,628	+		DDA3937_RS07190	0.35	-1.4
1,620,628	+		DDA3937_RS07190	0.35	-0.2
1,620,628	+		DDA3937_RS07190	0.35	-1.3
1,620,628	+		DDA3937_RS07190	0.35	+0.4
1,620,629	-		DDA3937_RS07190	0.35	-0.0
1,620,629	-		DDA3937_RS07190	0.35	-1.2
1,620,645	+		DDA3937_RS07190	0.36	-0.6
1,620,646	-		DDA3937_RS07190	0.36	-1.4
1,620,769	+				+0.6
1,620,770	-		DDA3937_RS07190	0.43	-0.2
1,621,030	-		DDA3937_RS07190	0.58	+1.2
1,621,030	-		DDA3937_RS07190	0.58	-1.1
1,621,030	-		DDA3937_RS07190	0.58	+2.1
1,621,030	-		DDA3937_RS07190	0.58	-1.5
1,621,030	-		DDA3937_RS07190	0.58	-1.2
1,621,030	-		DDA3937_RS07190	0.58	-3.8
1,621,030	-		DDA3937_RS07190	0.58	+0.6
1,621,063	+		DDA3937_RS07190	0.60	-0.8
1,621,064	-		DDA3937_RS07190	0.60	-1.8
1,621,093	-		DDA3937_RS07190	0.62	-1.0
1,621,120	+		DDA3937_RS07190	0.63	+1.2
1,621,123	+		DDA3937_RS07190	0.63	-1.6
1,621,124	-		DDA3937_RS07190	0.63	+0.3
1,621,159	-		DDA3937_RS07190	0.65	-0.8
1,621,519	+		DDA3937_RS07190	0.86	-0.7
1,621,519	+		DDA3937_RS07190	0.86	-0.3
1,621,700	+				-0.4
1,621,701	-				+0.2
1,621,808	+				-1.6
1,621,809	-				-1.4
1,621,809	-				+1.8
1,621,813	+				-0.0
1,621,813	+				-0.8
1,621,813	+				-1.6
1,621,813	+				+0.5
1,621,813	+				+0.5
1,621,813	+				+1.2
1,621,813	+				-0.1
1,621,813	+				+0.7
1,621,813	+				+0.6
1,621,814	-				-2.8
1,621,814	-				-0.4
1,621,814	-				-0.3
1,621,824	+				-0.4
1,621,824	+				-1.8
1,621,840	+				+0.5
1,621,840	+				+1.2
1,621,840	+				-0.6
1,621,849	-				+0.0
1,621,849	-				+0.2
1,622,026	+		DDA3937_RS07195	0.29	-1.3
1,622,026	+		DDA3937_RS07195	0.29	+0.3
1,622,027	-		DDA3937_RS07195	0.29	-0.4
1,622,027	-		DDA3937_RS07195	0.29	-1.1
1,622,126	+		DDA3937_RS07195	0.43	+0.1
1,622,127	-		DDA3937_RS07195	0.43	+1.2
1,622,127	-		DDA3937_RS07195	0.43	-0.3
1,622,160	-		DDA3937_RS07195	0.48	-0.6
1,622,214	-		DDA3937_RS07195	0.56	-0.4
1,622,214	-		DDA3937_RS07195	0.56	+1.0
1,622,280	+		DDA3937_RS07195	0.65	-0.6
1,622,312	+		DDA3937_RS07195	0.70	+2.3
1,622,312	+		DDA3937_RS07195	0.70	+2.0
1,622,313	-		DDA3937_RS07195	0.70	-1.6
1,622,364	+		DDA3937_RS07195	0.77	-0.1
1,622,371	+		DDA3937_RS07195	0.78	-1.7
1,622,623	-				-1.4
1,622,623	-				+1.2
1,622,634	+				+1.5
1,622,727	-		DDA3937_RS07200	0.14	+0.2
1,622,727	-				-0.1