Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06935

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06930 and DDA3937_RS06935 overlap by 14 nucleotidesDDA3937_RS06935 and DDA3937_RS06940 are separated by 35 nucleotides DDA3937_RS06930: DDA3937_RS06930 - ATP-binding cassette domain-containing protein, at 1,550,459 to 1,551,550 _RS06930 DDA3937_RS06935: DDA3937_RS06935 - ABC transporter substrate-binding protein, at 1,551,537 to 1,553,051 _RS06935 DDA3937_RS06940: DDA3937_RS06940 - AMP nucleosidase, at 1,553,087 to 1,554,544 _RS06940 Position (kb) 1551 1552 1553 1554Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1550.626 kb on + strand, within DDA3937_RS06930at 1550.627 kb on - strand, within DDA3937_RS06930at 1550.667 kb on + strand, within DDA3937_RS06930at 1550.668 kb on - strand, within DDA3937_RS06930at 1550.728 kb on - strand, within DDA3937_RS06930at 1550.728 kb on - strand, within DDA3937_RS06930at 1550.728 kb on - strand, within DDA3937_RS06930at 1550.823 kb on + strand, within DDA3937_RS06930at 1550.823 kb on + strand, within DDA3937_RS06930at 1550.824 kb on - strand, within DDA3937_RS06930at 1550.833 kb on + strand, within DDA3937_RS06930at 1550.834 kb on - strand, within DDA3937_RS06930at 1551.046 kb on + strand, within DDA3937_RS06930at 1551.152 kb on + strand, within DDA3937_RS06930at 1551.152 kb on + strand, within DDA3937_RS06930at 1551.152 kb on + strand, within DDA3937_RS06930at 1551.152 kb on + strand, within DDA3937_RS06930at 1551.153 kb on - strand, within DDA3937_RS06930at 1551.215 kb on + strand, within DDA3937_RS06930at 1551.215 kb on + strand, within DDA3937_RS06930at 1551.216 kb on - strand, within DDA3937_RS06930at 1551.216 kb on - strand, within DDA3937_RS06930at 1551.216 kb on - strand, within DDA3937_RS06930at 1551.384 kb on + strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.470 kb on - strandat 1551.470 kb on - strandat 1551.516 kb on + strandat 1551.547 kb on - strandat 1551.668 kb on + strandat 1551.669 kb on - strandat 1551.709 kb on + strand, within DDA3937_RS06935at 1551.710 kb on - strand, within DDA3937_RS06935at 1551.710 kb on - strand, within DDA3937_RS06935at 1551.801 kb on + strand, within DDA3937_RS06935at 1551.801 kb on + strand, within DDA3937_RS06935at 1551.801 kb on + strand, within DDA3937_RS06935at 1551.801 kb on + strand, within DDA3937_RS06935at 1551.802 kb on - strand, within DDA3937_RS06935at 1551.802 kb on - strand, within DDA3937_RS06935at 1551.866 kb on - strand, within DDA3937_RS06935at 1551.918 kb on + strand, within DDA3937_RS06935at 1551.918 kb on + strand, within DDA3937_RS06935at 1551.919 kb on - strand, within DDA3937_RS06935at 1551.919 kb on - strand, within DDA3937_RS06935at 1551.919 kb on - strand, within DDA3937_RS06935at 1551.956 kb on + strand, within DDA3937_RS06935at 1551.956 kb on + strand, within DDA3937_RS06935at 1552.155 kb on + strand, within DDA3937_RS06935at 1552.155 kb on + strand, within DDA3937_RS06935at 1552.156 kb on - strand, within DDA3937_RS06935at 1552.217 kb on + strand, within DDA3937_RS06935at 1552.218 kb on - strand, within DDA3937_RS06935at 1552.223 kb on + strand, within DDA3937_RS06935at 1552.223 kb on + strand, within DDA3937_RS06935at 1552.286 kb on - strand, within DDA3937_RS06935at 1552.384 kb on + strand, within DDA3937_RS06935at 1552.384 kb on + strand, within DDA3937_RS06935at 1552.385 kb on - strand, within DDA3937_RS06935at 1552.407 kb on + strand, within DDA3937_RS06935at 1552.407 kb on + strandat 1552.448 kb on + strand, within DDA3937_RS06935at 1552.448 kb on + strand, within DDA3937_RS06935at 1552.448 kb on + strand, within DDA3937_RS06935at 1552.449 kb on - strand, within DDA3937_RS06935at 1552.452 kb on + strand, within DDA3937_RS06935at 1552.452 kb on + strand, within DDA3937_RS06935at 1552.453 kb on - strand, within DDA3937_RS06935at 1552.453 kb on - strand, within DDA3937_RS06935at 1552.473 kb on + strand, within DDA3937_RS06935at 1552.474 kb on - strand, within DDA3937_RS06935at 1552.494 kb on + strand, within DDA3937_RS06935at 1552.495 kb on - strand, within DDA3937_RS06935at 1552.498 kb on - strand, within DDA3937_RS06935at 1552.500 kb on + strand, within DDA3937_RS06935at 1552.500 kb on + strand, within DDA3937_RS06935at 1552.501 kb on - strand, within DDA3937_RS06935at 1552.501 kb on - strand, within DDA3937_RS06935at 1552.524 kb on + strand, within DDA3937_RS06935at 1552.524 kb on + strand, within DDA3937_RS06935at 1552.587 kb on + strand, within DDA3937_RS06935at 1552.587 kb on + strand, within DDA3937_RS06935at 1552.588 kb on - strand, within DDA3937_RS06935at 1552.588 kb on - strand, within DDA3937_RS06935at 1552.588 kb on - strand, within DDA3937_RS06935at 1552.664 kb on + strand, within DDA3937_RS06935at 1552.671 kb on - strand, within DDA3937_RS06935at 1552.743 kb on + strand, within DDA3937_RS06935at 1552.808 kb on + strand, within DDA3937_RS06935at 1552.808 kb on + strand, within DDA3937_RS06935at 1552.809 kb on - strand, within DDA3937_RS06935at 1552.809 kb on - strand, within DDA3937_RS06935at 1552.809 kb on - strand, within DDA3937_RS06935at 1552.809 kb on - strand, within DDA3937_RS06935at 1552.815 kb on + strand, within DDA3937_RS06935at 1552.815 kb on + strand, within DDA3937_RS06935at 1552.815 kb on + strand, within DDA3937_RS06935at 1552.815 kb on + strand, within DDA3937_RS06935at 1552.815 kb on + strand, within DDA3937_RS06935at 1552.816 kb on - strand, within DDA3937_RS06935at 1552.816 kb on - strand, within DDA3937_RS06935at 1552.816 kb on - strand, within DDA3937_RS06935at 1552.816 kb on - strand, within DDA3937_RS06935at 1552.816 kb on - strand, within DDA3937_RS06935at 1552.816 kb on - strand, within DDA3937_RS06935at 1552.902 kb on + strandat 1552.902 kb on + strandat 1552.902 kb on + strandat 1552.902 kb on + strandat 1552.902 kb on + strandat 1552.902 kb on + strandat 1552.902 kb on + strandat 1552.903 kb on - strandat 1552.903 kb on - strandat 1552.903 kb on - strandat 1552.953 kb on + strandat 1552.953 kb on + strandat 1552.953 kb on + strandat 1552.954 kb on - strandat 1552.954 kb on - strandat 1552.956 kb on + strandat 1552.956 kb on + strandat 1552.956 kb on + strandat 1552.957 kb on - strandat 1552.957 kb on - strandat 1552.957 kb on - strandat 1552.957 kb on - strandat 1552.970 kb on + strandat 1553.036 kb on + strandat 1553.036 kb on + strandat 1553.037 kb on - strandat 1553.084 kb on + strandat 1553.084 kb on + strandat 1553.084 kb on + strandat 1553.085 kb on - strandat 1553.085 kb on - strandat 1553.117 kb on + strandat 1553.117 kb on + strandat 1553.117 kb on + strandat 1553.118 kb on - strandat 1553.118 kb on - strandat 1553.122 kb on + strandat 1553.123 kb on - strandat 1553.208 kb on + strandat 1553.208 kb on + strandat 1553.208 kb on + strandat 1553.208 kb on + strandat 1553.209 kb on - strandat 1553.209 kb on - strandat 1553.209 kb on - strandat 1553.487 kb on + strand, within DDA3937_RS06940at 1553.487 kb on + strand, within DDA3937_RS06940at 1553.488 kb on - strand, within DDA3937_RS06940at 1553.571 kb on + strand, within DDA3937_RS06940at 1553.572 kb on - strand, within DDA3937_RS06940at 1553.572 kb on - strand, within DDA3937_RS06940at 1553.585 kb on + strand, within DDA3937_RS06940at 1553.589 kb on + strandat 1553.590 kb on - strand, within DDA3937_RS06940at 1553.590 kb on - strand, within DDA3937_RS06940at 1553.722 kb on + strand, within DDA3937_RS06940at 1553.755 kb on - strand, within DDA3937_RS06940at 1553.860 kb on - strand, within DDA3937_RS06940at 1553.925 kb on + strand, within DDA3937_RS06940at 1553.925 kb on + strand, within DDA3937_RS06940at 1553.925 kb on + strand, within DDA3937_RS06940at 1553.925 kb on + strandat 1553.925 kb on + strand, within DDA3937_RS06940at 1553.925 kb on + strand, within DDA3937_RS06940at 1553.926 kb on - strand, within DDA3937_RS06940at 1553.926 kb on - strand, within DDA3937_RS06940at 1553.926 kb on - strand, within DDA3937_RS06940at 1553.926 kb on - strand, within DDA3937_RS06940

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,550,626 + DDA3937_RS06930 0.15 +0.3
1,550,627 - DDA3937_RS06930 0.15 +1.0
1,550,667 + DDA3937_RS06930 0.19 +0.2
1,550,668 - DDA3937_RS06930 0.19 -0.1
1,550,728 - DDA3937_RS06930 0.25 -0.8
1,550,728 - DDA3937_RS06930 0.25 +0.1
1,550,728 - DDA3937_RS06930 0.25 -0.4
1,550,823 + DDA3937_RS06930 0.33 -0.6
1,550,823 + DDA3937_RS06930 0.33 +0.4
1,550,824 - DDA3937_RS06930 0.33 -0.1
1,550,833 + DDA3937_RS06930 0.34 -0.2
1,550,834 - DDA3937_RS06930 0.34 +0.0
1,551,046 + DDA3937_RS06930 0.54 +0.2
1,551,152 + DDA3937_RS06930 0.63 +0.9
1,551,152 + DDA3937_RS06930 0.63 +0.9
1,551,152 + DDA3937_RS06930 0.63 -1.6
1,551,152 + DDA3937_RS06930 0.63 -1.1
1,551,153 - DDA3937_RS06930 0.64 +0.2
1,551,215 + DDA3937_RS06930 0.69 +0.9
1,551,215 + DDA3937_RS06930 0.69 -0.1
1,551,216 - DDA3937_RS06930 0.69 +0.6
1,551,216 - DDA3937_RS06930 0.69 -1.3
1,551,216 - DDA3937_RS06930 0.69 -2.4
1,551,384 + DDA3937_RS06930 0.85 -1.7
1,551,385 - DDA3937_RS06930 0.85 -0.4
1,551,385 - DDA3937_RS06930 0.85 -0.6
1,551,385 - DDA3937_RS06930 0.85 +1.8
1,551,385 - DDA3937_RS06930 0.85 +0.3
1,551,385 - DDA3937_RS06930 0.85 -0.4
1,551,470 - -0.0
1,551,470 - +0.3
1,551,516 + -0.3
1,551,547 - +0.2
1,551,668 + +0.3
1,551,669 - -0.2
1,551,709 + DDA3937_RS06935 0.11 -0.9
1,551,710 - DDA3937_RS06935 0.11 +0.5
1,551,710 - DDA3937_RS06935 0.11 +0.1
1,551,801 + DDA3937_RS06935 0.17 -1.7
1,551,801 + DDA3937_RS06935 0.17 +1.4
1,551,801 + DDA3937_RS06935 0.17 +0.7
1,551,801 + DDA3937_RS06935 0.17 -1.0
1,551,802 - DDA3937_RS06935 0.17 -0.2
1,551,802 - DDA3937_RS06935 0.17 -0.3
1,551,866 - DDA3937_RS06935 0.22 +0.5
1,551,918 + DDA3937_RS06935 0.25 -1.4
1,551,918 + DDA3937_RS06935 0.25 -0.2
1,551,919 - DDA3937_RS06935 0.25 -0.2
1,551,919 - DDA3937_RS06935 0.25 +1.9
1,551,919 - DDA3937_RS06935 0.25 +0.3
1,551,956 + DDA3937_RS06935 0.28 +2.0
1,551,956 + DDA3937_RS06935 0.28 +1.8
1,552,155 + DDA3937_RS06935 0.41 +0.9
1,552,155 + DDA3937_RS06935 0.41 -1.4
1,552,156 - DDA3937_RS06935 0.41 -0.2
1,552,217 + DDA3937_RS06935 0.45 +1.5
1,552,218 - DDA3937_RS06935 0.45 -1.8
1,552,223 + DDA3937_RS06935 0.45 -2.0
1,552,223 + DDA3937_RS06935 0.45 -0.3
1,552,286 - DDA3937_RS06935 0.49 -0.3
1,552,384 + DDA3937_RS06935 0.56 -1.1
1,552,384 + DDA3937_RS06935 0.56 -0.6
1,552,385 - DDA3937_RS06935 0.56 -2.1
1,552,407 + DDA3937_RS06935 0.57 -0.5
1,552,407 + -0.8
1,552,448 + DDA3937_RS06935 0.60 +0.0
1,552,448 + DDA3937_RS06935 0.60 -2.9
1,552,448 + DDA3937_RS06935 0.60 +0.2
1,552,449 - DDA3937_RS06935 0.60 +0.5
1,552,452 + DDA3937_RS06935 0.60 -0.1
1,552,452 + DDA3937_RS06935 0.60 +1.1
1,552,453 - DDA3937_RS06935 0.60 -0.5
1,552,453 - DDA3937_RS06935 0.60 -0.1
1,552,473 + DDA3937_RS06935 0.62 +0.6
1,552,474 - DDA3937_RS06935 0.62 -1.8
1,552,494 + DDA3937_RS06935 0.63 +0.9
1,552,495 - DDA3937_RS06935 0.63 -0.4
1,552,498 - DDA3937_RS06935 0.63 -1.0
1,552,500 + DDA3937_RS06935 0.64 -0.5
1,552,500 + DDA3937_RS06935 0.64 +0.7
1,552,501 - DDA3937_RS06935 0.64 -1.3
1,552,501 - DDA3937_RS06935 0.64 -0.4
1,552,524 + DDA3937_RS06935 0.65 -0.3
1,552,524 + DDA3937_RS06935 0.65 +0.9
1,552,587 + DDA3937_RS06935 0.69 +0.7
1,552,587 + DDA3937_RS06935 0.69 +1.3
1,552,588 - DDA3937_RS06935 0.69 -0.1
1,552,588 - DDA3937_RS06935 0.69 +1.0
1,552,588 - DDA3937_RS06935 0.69 -0.5
1,552,664 + DDA3937_RS06935 0.74 -0.9
1,552,671 - DDA3937_RS06935 0.75 +1.8
1,552,743 + DDA3937_RS06935 0.80 +1.2
1,552,808 + DDA3937_RS06935 0.84 -1.1
1,552,808 + DDA3937_RS06935 0.84 -0.5
1,552,809 - DDA3937_RS06935 0.84 +0.1
1,552,809 - DDA3937_RS06935 0.84 +2.2
1,552,809 - DDA3937_RS06935 0.84 +1.0
1,552,809 - DDA3937_RS06935 0.84 +0.0
1,552,815 + DDA3937_RS06935 0.84 +0.1
1,552,815 + DDA3937_RS06935 0.84 +0.2
1,552,815 + DDA3937_RS06935 0.84 +0.2
1,552,815 + DDA3937_RS06935 0.84 -0.2
1,552,815 + DDA3937_RS06935 0.84 -0.2
1,552,816 - DDA3937_RS06935 0.84 +0.8
1,552,816 - DDA3937_RS06935 0.84 -0.4
1,552,816 - DDA3937_RS06935 0.84 -0.5
1,552,816 - DDA3937_RS06935 0.84 -1.8
1,552,816 - DDA3937_RS06935 0.84 -0.8
1,552,816 - DDA3937_RS06935 0.84 +1.2
1,552,902 + +2.7
1,552,902 + -0.1
1,552,902 + -1.0
1,552,902 + +1.8
1,552,902 + +0.4
1,552,902 + -0.5
1,552,902 + -0.3
1,552,903 - +1.4
1,552,903 - +0.9
1,552,903 - -1.6
1,552,953 + +1.5
1,552,953 + -0.4
1,552,953 + -1.4
1,552,954 - -0.2
1,552,954 - -2.2
1,552,956 + -1.1
1,552,956 + +1.6
1,552,956 + -0.6
1,552,957 - -0.6
1,552,957 - +1.0
1,552,957 - -0.5
1,552,957 - +0.4
1,552,970 + -0.8
1,553,036 + +0.9
1,553,036 + -1.3
1,553,037 - -1.8
1,553,084 + +1.2
1,553,084 + +1.2
1,553,084 + -1.4
1,553,085 - -1.2
1,553,085 - +1.2
1,553,117 + +1.0
1,553,117 + -2.2
1,553,117 + +1.0
1,553,118 - -0.0
1,553,118 - -0.2
1,553,122 + +1.7
1,553,123 - -0.9
1,553,208 + -1.1
1,553,208 + +0.2
1,553,208 + -1.4
1,553,208 + +3.7
1,553,209 - -0.8
1,553,209 - +1.4
1,553,209 - -3.3
1,553,487 + DDA3937_RS06940 0.27 -1.0
1,553,487 + DDA3937_RS06940 0.27 -1.9
1,553,488 - DDA3937_RS06940 0.28 +0.2
1,553,571 + DDA3937_RS06940 0.33 +2.2
1,553,572 - DDA3937_RS06940 0.33 +1.2
1,553,572 - DDA3937_RS06940 0.33 +0.6
1,553,585 + DDA3937_RS06940 0.34 -0.2
1,553,589 + -0.8
1,553,590 - DDA3937_RS06940 0.34 +2.2
1,553,590 - DDA3937_RS06940 0.34 +0.1
1,553,722 + DDA3937_RS06940 0.44 +1.2
1,553,755 - DDA3937_RS06940 0.46 -1.1
1,553,860 - DDA3937_RS06940 0.53 +0.5
1,553,925 + DDA3937_RS06940 0.57 -1.4
1,553,925 + DDA3937_RS06940 0.57 +1.2
1,553,925 + DDA3937_RS06940 0.57 +0.5
1,553,925 + -0.8
1,553,925 + DDA3937_RS06940 0.57 -1.4
1,553,925 + DDA3937_RS06940 0.57 +1.3
1,553,926 - DDA3937_RS06940 0.58 -0.2
1,553,926 - DDA3937_RS06940 0.58 -0.7
1,553,926 - DDA3937_RS06940 0.58 +0.4
1,553,926 - DDA3937_RS06940 0.58 +1.6

Or see this region's nucleotide sequence