Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06880

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,539,026	-				+0.7
1,539,109	-		DDA3937_RS06875	0.16	-2.0
1,539,120	+		DDA3937_RS06875	0.18	+0.1
1,539,126	+		DDA3937_RS06875	0.18	+0.9
1,539,127	-		DDA3937_RS06875	0.18	+0.5
1,539,252	+		DDA3937_RS06875	0.34	-0.4
1,539,252	+		DDA3937_RS06875	0.34	-1.8
1,539,253	-		DDA3937_RS06875	0.34	+0.6
1,539,255	+		DDA3937_RS06875	0.35	-1.2
1,539,256	-		DDA3937_RS06875	0.35	+1.0
1,539,256	-		DDA3937_RS06875	0.35	+0.7
1,539,256	-		DDA3937_RS06875	0.35	+0.2
1,539,256	-		DDA3937_RS06875	0.35	-0.4
1,539,279	-		DDA3937_RS06875	0.38	-2.0
1,539,388	+		DDA3937_RS06875	0.51	+0.2
1,539,389	-		DDA3937_RS06875	0.51	+0.8
1,539,748	-				-0.1
1,539,838	+				-0.3
1,539,838	+				-1.3
1,539,839	-				+0.2
1,539,841	+				-1.2
1,539,842	-				-1.2
1,539,916	+				-0.2
1,539,919	-				+0.4
1,539,998	+				-0.3
1,539,998	+				-0.5
1,539,999	-				-0.1
1,540,060	+				-0.7
1,540,060	+				+0.0
1,540,060	+				-0.2
1,540,061	-				-0.5
1,540,140	-				-0.4
1,540,140	-				+0.4
1,540,165	+				-1.4
1,540,166	-				-1.8
1,540,169	-				-0.3
1,540,203	-				-3.2
1,540,327	+		DDA3937_RS06880	0.13	-0.6
1,540,327	+		DDA3937_RS06880	0.13	-0.9
1,540,327	+		DDA3937_RS06880	0.13	-1.5
1,540,327	+		DDA3937_RS06880	0.13	-0.4
1,540,327	+		DDA3937_RS06880	0.13	+0.4
1,540,327	+		DDA3937_RS06880	0.13	-0.6
1,540,328	-		DDA3937_RS06880	0.13	+0.6
1,540,328	-		DDA3937_RS06880	0.13	-0.1
1,540,328	-		DDA3937_RS06880	0.13	-0.1
1,540,328	-		DDA3937_RS06880	0.13	-1.4
1,540,328	-		DDA3937_RS06880	0.13	-0.8
1,540,328	-		DDA3937_RS06880	0.13	-1.1
1,540,359	-		DDA3937_RS06880	0.14	+0.6
1,540,359	-		DDA3937_RS06880	0.14	-0.9
1,540,443	+		DDA3937_RS06880	0.18	+0.3
1,540,452	+		DDA3937_RS06880	0.18	+0.2
1,540,453	-		DDA3937_RS06880	0.18	-3.2
1,540,556	+		DDA3937_RS06880	0.22	-0.2
1,540,556	+		DDA3937_RS06880	0.22	+0.3
1,540,557	-		DDA3937_RS06880	0.22	-1.0
1,540,557	-		DDA3937_RS06880	0.22	-0.7
1,540,557	-		DDA3937_RS06880	0.22	+0.3
1,540,557	-		DDA3937_RS06880	0.22	-0.6
1,540,557	-		DDA3937_RS06880	0.22	+0.2
1,540,557	-		DDA3937_RS06880	0.22	+1.6
1,540,557	-		DDA3937_RS06880	0.22	+1.3
1,540,557	-		DDA3937_RS06880	0.22	+0.3
1,540,557	-		DDA3937_RS06880	0.22	-1.1
1,540,578	+		DDA3937_RS06880	0.23	+1.7
1,540,578	+				+2.2
1,540,578	+		DDA3937_RS06880	0.23	+0.2
1,540,579	-		DDA3937_RS06880	0.23	+0.2
1,540,590	+		DDA3937_RS06880	0.24	-0.0
1,540,590	+		DDA3937_RS06880	0.24	-0.4
1,540,590	+		DDA3937_RS06880	0.24	+0.0
1,540,590	+		DDA3937_RS06880	0.24	+0.3
1,540,590	+		DDA3937_RS06880	0.24	+0.2
1,540,591	-		DDA3937_RS06880	0.24	+0.1
1,540,591	-		DDA3937_RS06880	0.24	-2.1
1,540,591	-		DDA3937_RS06880	0.24	-1.1
1,540,591	-		DDA3937_RS06880	0.24	-0.2
1,540,591	-				-1.4
1,540,591	-		DDA3937_RS06880	0.24	+2.6
1,540,591	-		DDA3937_RS06880	0.24	-0.4
1,540,591	-		DDA3937_RS06880	0.24	+0.6
1,540,591	-		DDA3937_RS06880	0.24	-0.6
1,540,591	-		DDA3937_RS06880	0.24	+0.1
1,540,591	-		DDA3937_RS06880	0.24	-1.6
1,540,591	-		DDA3937_RS06880	0.24	-0.1
1,540,596	+		DDA3937_RS06880	0.24	+0.6
1,540,596	+		DDA3937_RS06880	0.24	-1.4
1,540,596	+		DDA3937_RS06880	0.24	-0.4
1,540,596	+		DDA3937_RS06880	0.24	+0.6
1,540,597	-		DDA3937_RS06880	0.24	-0.3
1,540,597	-		DDA3937_RS06880	0.24	+0.2
1,540,597	-		DDA3937_RS06880	0.24	+0.7
1,540,680	-		DDA3937_RS06880	0.27	-1.6
1,540,695	+		DDA3937_RS06880	0.28	+0.7
1,540,696	-		DDA3937_RS06880	0.28	-1.6
1,540,696	-		DDA3937_RS06880	0.28	-0.6
1,540,700	-		DDA3937_RS06880	0.28	-1.4
1,540,719	+		DDA3937_RS06880	0.29	-0.1
1,540,719	+		DDA3937_RS06880	0.29	-0.8
1,540,719	+		DDA3937_RS06880	0.29	+0.7
1,540,719	+		DDA3937_RS06880	0.29	+1.2
1,540,720	-		DDA3937_RS06880	0.29	-2.5
1,540,720	-		DDA3937_RS06880	0.29	-1.7
1,540,720	-		DDA3937_RS06880	0.29	+0.1
1,540,740	+				+0.2
1,540,741	-		DDA3937_RS06880	0.30	+0.4
1,540,925	+		DDA3937_RS06880	0.37	+1.4
1,540,959	+		DDA3937_RS06880	0.39	-0.6
1,540,962	+		DDA3937_RS06880	0.39	-0.1
1,540,962	+		DDA3937_RS06880	0.39	-2.1
1,540,962	+		DDA3937_RS06880	0.39	-1.8
1,540,962	+		DDA3937_RS06880	0.39	-1.7
1,540,962	+		DDA3937_RS06880	0.39	-0.5
1,540,962	+		DDA3937_RS06880	0.39	-0.3
1,540,962	+		DDA3937_RS06880	0.39	+0.5
1,540,963	-		DDA3937_RS06880	0.39	-0.1
1,540,963	-		DDA3937_RS06880	0.39	-1.9
1,540,963	-		DDA3937_RS06880	0.39	-0.4
1,540,963	-		DDA3937_RS06880	0.39	+0.1
1,540,963	-		DDA3937_RS06880	0.39	-1.4
1,540,963	-		DDA3937_RS06880	0.39	-2.8
1,540,963	-		DDA3937_RS06880	0.39	-0.8
1,540,986	+		DDA3937_RS06880	0.40	+0.4
1,541,208	+		DDA3937_RS06880	0.49	-1.2
1,541,209	-		DDA3937_RS06880	0.49	-2.9
1,541,224	-		DDA3937_RS06880	0.49	+0.9
1,541,380	-		DDA3937_RS06880	0.56	+2.3
1,541,380	-		DDA3937_RS06880	0.56	-2.9
1,541,475	-		DDA3937_RS06880	0.59	-2.4
1,541,546	-		DDA3937_RS06880	0.62	+0.7
1,541,548	-		DDA3937_RS06880	0.62	-0.8
1,541,548	-		DDA3937_RS06880	0.62	-0.6
1,541,548	-		DDA3937_RS06880	0.62	-0.8
1,541,599	-		DDA3937_RS06880	0.64	-0.3
1,541,625	+		DDA3937_RS06880	0.65	+0.4
1,541,625	+				+2.5
1,541,626	-		DDA3937_RS06880	0.65	-0.4
1,541,626	-		DDA3937_RS06880	0.65	+0.1
1,541,626	-		DDA3937_RS06880	0.65	-1.3
1,541,673	+		DDA3937_RS06880	0.67	-0.5
1,541,700	+		DDA3937_RS06880	0.68	-0.8
1,541,700	+				+0.2
1,541,700	+		DDA3937_RS06880	0.68	+0.9
1,541,700	+		DDA3937_RS06880	0.68	-0.5
1,541,700	+		DDA3937_RS06880	0.68	-1.3
1,541,701	-		DDA3937_RS06880	0.68	+0.0
1,541,701	-		DDA3937_RS06880	0.68	+0.1
1,541,701	-		DDA3937_RS06880	0.68	-0.2
1,541,718	+		DDA3937_RS06880	0.69	+1.0
1,541,718	+		DDA3937_RS06880	0.69	-0.7
1,541,718	+		DDA3937_RS06880	0.69	-3.5
1,541,719	-		DDA3937_RS06880	0.69	-3.4
1,541,719	-		DDA3937_RS06880	0.69	+0.1
1,541,766	+		DDA3937_RS06880	0.71	-1.4
1,541,766	+		DDA3937_RS06880	0.71	-1.0
1,541,766	+		DDA3937_RS06880	0.71	+0.4
1,541,766	+		DDA3937_RS06880	0.71	-0.4
1,541,766	+		DDA3937_RS06880	0.71	+0.9
1,541,767	-		DDA3937_RS06880	0.71	-0.8
1,541,767	-		DDA3937_RS06880	0.71	-2.9
1,541,767	-		DDA3937_RS06880	0.71	+0.3
1,541,767	-		DDA3937_RS06880	0.71	+2.7
1,541,767	-		DDA3937_RS06880	0.71	-1.4
1,541,767	-		DDA3937_RS06880	0.71	-0.2
1,541,767	-		DDA3937_RS06880	0.71	-1.4
1,541,767	-		DDA3937_RS06880	0.71	-0.1
1,541,767	-		DDA3937_RS06880	0.71	-0.0
1,541,804	+		DDA3937_RS06880	0.73	-1.4
1,541,805	-		DDA3937_RS06880	0.73	+0.5
1,541,826	+		DDA3937_RS06880	0.73	-1.0
1,541,826	+		DDA3937_RS06880	0.73	+0.8
1,541,826	+		DDA3937_RS06880	0.73	+0.2
1,541,826	+		DDA3937_RS06880	0.73	-0.0
1,541,826	+		DDA3937_RS06880	0.73	-0.6
1,541,826	+		DDA3937_RS06880	0.73	-0.5
1,541,827	-		DDA3937_RS06880	0.74	+2.4
1,541,827	-		DDA3937_RS06880	0.74	-0.4
1,541,835	+		DDA3937_RS06880	0.74	+1.3
1,541,835	+		DDA3937_RS06880	0.74	+1.1
1,541,836	-		DDA3937_RS06880	0.74	-0.2
1,541,899	+		DDA3937_RS06880	0.76	-3.0
1,541,899	+		DDA3937_RS06880	0.76	-0.1
1,541,900	-		DDA3937_RS06880	0.76	-0.4
1,541,909	+		DDA3937_RS06880	0.77	+0.2
1,541,909	+		DDA3937_RS06880	0.77	-1.2
1,541,909	+		DDA3937_RS06880	0.77	-1.4
1,541,909	+		DDA3937_RS06880	0.77	-1.1
1,541,910	-		DDA3937_RS06880	0.77	-1.0
1,541,910	-		DDA3937_RS06880	0.77	-0.3
1,541,913	+		DDA3937_RS06880	0.77	-0.5
1,541,913	+		DDA3937_RS06880	0.77	+0.8
1,541,913	+		DDA3937_RS06880	0.77	-2.0
1,541,913	+		DDA3937_RS06880	0.77	-0.1
1,541,913	+		DDA3937_RS06880	0.77	-1.6
1,541,913	+		DDA3937_RS06880	0.77	+0.1
1,541,914	-		DDA3937_RS06880	0.77	+0.1
1,541,914	-		DDA3937_RS06880	0.77	+0.4
1,541,914	-		DDA3937_RS06880	0.77	-2.7
1,541,914	-		DDA3937_RS06880	0.77	+0.4
1,541,914	-		DDA3937_RS06880	0.77	+0.2
1,541,949	+		DDA3937_RS06880	0.78	+1.0
1,541,949	+		DDA3937_RS06880	0.78	+1.4
1,541,949	+		DDA3937_RS06880	0.78	+0.4
1,541,950	-		DDA3937_RS06880	0.78	+1.2
1,541,950	-		DDA3937_RS06880	0.78	+1.7
1,541,950	-		DDA3937_RS06880	0.78	+1.9
1,541,950	-		DDA3937_RS06880	0.78	+0.6
1,541,951	+		DDA3937_RS06880	0.78	-0.3
1,541,951	+		DDA3937_RS06880	0.78	+0.3
1,541,951	+		DDA3937_RS06880	0.78	-0.8
1,541,951	+		DDA3937_RS06880	0.78	-0.1
1,541,951	+		DDA3937_RS06880	0.78	-0.4
1,541,952	-		DDA3937_RS06880	0.79	+1.5
1,541,952	-		DDA3937_RS06880	0.79	+1.7
1,541,955	+		DDA3937_RS06880	0.79	-2.7
1,541,955	+		DDA3937_RS06880	0.79	+0.7
1,541,955	+		DDA3937_RS06880	0.79	-1.0
1,541,956	-		DDA3937_RS06880	0.79	-0.3
1,542,039	+		DDA3937_RS06880	0.82	+3.4
1,542,040	-		DDA3937_RS06880	0.82	+1.0
1,542,040	-		DDA3937_RS06880	0.82	-0.5
1,542,041	+		DDA3937_RS06880	0.82	+0.3
1,542,042	-		DDA3937_RS06880	0.82	-0.7
1,542,042	-		DDA3937_RS06880	0.82	+0.6
1,542,042	-		DDA3937_RS06880	0.82	-0.4
1,542,081	+		DDA3937_RS06880	0.84	-0.2
1,542,081	+		DDA3937_RS06880	0.84	-0.8
1,542,081	+		DDA3937_RS06880	0.84	-0.5
1,542,081	+		DDA3937_RS06880	0.84	+0.8
1,542,081	+		DDA3937_RS06880	0.84	-1.2
1,542,082	-		DDA3937_RS06880	0.84	+1.8
1,542,082	-				-0.8
1,542,082	-		DDA3937_RS06880	0.84	-0.8
1,542,082	-		DDA3937_RS06880	0.84	-0.4
1,542,100	+		DDA3937_RS06880	0.84	-0.1
1,542,100	+		DDA3937_RS06880	0.84	+6.7
1,542,173	+		DDA3937_RS06880	0.87	-0.0
1,542,174	-		DDA3937_RS06880	0.87	-3.3
1,542,174	-		DDA3937_RS06880	0.87	-2.1
1,542,174	-		DDA3937_RS06880	0.87	+0.2
1,542,219	+		DDA3937_RS06880	0.89	-1.1
1,542,219	+		DDA3937_RS06880	0.89	-2.9
1,542,220	-		DDA3937_RS06880	0.89	-1.5
1,542,220	-		DDA3937_RS06880	0.89	+0.9
1,542,220	-		DDA3937_RS06880	0.89	-0.9
1,542,221	+		DDA3937_RS06880	0.89	-0.4
1,542,221	+		DDA3937_RS06880	0.89	-0.2
1,542,222	-		DDA3937_RS06880	0.89	-0.4
1,542,222	-		DDA3937_RS06880	0.89	-1.4
1,542,222	-		DDA3937_RS06880	0.89	-0.9
1,542,222	-		DDA3937_RS06880	0.89	-1.6
1,542,227	+		DDA3937_RS06880	0.90	+0.6
1,542,227	+		DDA3937_RS06880	0.90	+1.3
1,542,227	+		DDA3937_RS06880	0.90	-1.5
1,542,228	-		DDA3937_RS06880	0.90	-0.2
1,542,261	+				+0.7
1,542,261	+				-0.1
1,542,261	+				+3.0
1,542,261	+				+0.7
1,542,261	+				+0.2
1,542,261	+				-0.0
1,542,262	-				-0.3
1,542,262	-				-2.1
1,542,346	-				-1.4
1,542,348	-				+0.9
1,542,363	-				-2.0
1,542,366	+				-0.5
1,542,375	+				+1.2
1,542,421	-				+0.4
1,542,421	-				-2.3
1,542,452	+				-0.0
1,542,453	-				-2.1
1,542,493	+				-0.9
1,542,493	+				-0.6
1,542,551	-				+0.3
1,542,629	+				+0.3
1,542,629	+				-2.2
1,542,629	+				-0.4
1,542,629	+				-0.7
1,542,629	+				+0.0
1,542,630	-				-1.5
1,542,630	-				-1.4
1,542,630	-				-1.5
1,542,630	-				-0.3
1,542,630	-				-0.6
1,542,630	-				-0.8
1,542,631	+				-0.7
1,542,631	+				-1.0
1,542,631	+				-0.1
1,542,631	+				+0.4
1,542,632	-				+2.8
1,542,632	-				-0.2
1,542,632	-				+0.0
1,542,632	-				+0.2
1,542,664	+				-0.6
1,542,759	+				-0.8
1,542,761	+				-0.5
1,542,761	+				+0.1
1,542,761	+				+0.4
1,542,762	-				-0.9
1,542,762	-				-0.6
1,542,762	-				+2.0
1,542,762	-				-1.2
1,542,762	-				+2.0
1,542,762	-				+1.4
1,542,762	-				+0.7
1,542,762	-				+0.1
1,542,800	-		DDA3937_RS06885	0.12	+0.4
1,542,800	-		DDA3937_RS06885	0.12	-1.4
1,542,900	-		DDA3937_RS06885	0.21	-2.2
1,542,900	-		DDA3937_RS06885	0.21	-0.5
1,542,900	-		DDA3937_RS06885	0.21	+0.2
1,542,923	+		DDA3937_RS06885	0.23	-1.6
1,542,924	-		DDA3937_RS06885	0.23	+0.3
1,543,007	+		DDA3937_RS06885	0.30	-0.5
1,543,007	+		DDA3937_RS06885	0.30	+0.0
1,543,008	-		DDA3937_RS06885	0.30	+1.2
1,543,008	-		DDA3937_RS06885	0.30	+0.4
1,543,008	-		DDA3937_RS06885	0.30	-0.4
1,543,009	+		DDA3937_RS06885	0.30	+0.4
1,543,009	+		DDA3937_RS06885	0.30	+0.9
1,543,010	-		DDA3937_RS06885	0.30	+0.3
1,543,010	-		DDA3937_RS06885	0.30	+0.2
1,543,010	-		DDA3937_RS06885	0.30	+1.6
1,543,053	-		DDA3937_RS06885	0.34	+1.8
1,543,053	-				-0.4
1,543,150	+		DDA3937_RS06885	0.42	-1.2
1,543,150	+		DDA3937_RS06885	0.42	-0.2
1,543,150	+		DDA3937_RS06885	0.42	-0.5
1,543,150	+		DDA3937_RS06885	0.42	+0.4
1,543,151	-		DDA3937_RS06885	0.43	+0.5
1,543,151	-		DDA3937_RS06885	0.43	-1.0
1,543,151	-		DDA3937_RS06885	0.43	+3.5
1,543,303	-		DDA3937_RS06885	0.56	-0.1
1,543,303	-		DDA3937_RS06885	0.56	-1.1
1,543,303	-		DDA3937_RS06885	0.56	-0.7
1,543,331	+		DDA3937_RS06885	0.58	-0.3
1,543,331	+		DDA3937_RS06885	0.58	+0.9
1,543,331	+		DDA3937_RS06885	0.58	-2.6
1,543,331	+				-0.4
1,543,331	+		DDA3937_RS06885	0.58	-0.2
1,543,331	+		DDA3937_RS06885	0.58	-2.8
1,543,331	+		DDA3937_RS06885	0.58	+0.2
1,543,332	-		DDA3937_RS06885	0.58	+1.6
1,543,332	-		DDA3937_RS06885	0.58	+1.5
1,543,332	-		DDA3937_RS06885	0.58	+0.9
1,543,409	+		DDA3937_RS06885	0.65	-4.0
1,543,410	-		DDA3937_RS06885	0.65	-1.0
1,543,463	-		DDA3937_RS06885	0.70	-1.8