Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06575

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,465,943	+				+2.8
1,465,943	+				-0.3
1,465,943	+				+1.8
1,465,943	+				+0.3
1,465,943	+				-1.7
1,465,944	-				+0.4
1,465,944	-				+0.3
1,465,944	-				-0.9
1,465,944	-				+0.1
1,465,957	+				-1.3
1,465,957	+				-0.1
1,465,985	-				-2.9
1,465,986	+				-0.6
1,465,987	-				+0.3
1,465,990	+				+1.0
1,465,990	+				-0.8
1,465,990	+				-1.1
1,465,990	+				+0.2
1,465,990	+				-1.3
1,465,990	+				+2.1
1,465,991	-				-1.5
1,465,991	-				+1.3
1,465,993	+				+0.8
1,465,993	+				-2.6
1,465,993	+				-1.1
1,465,994	-				-1.4
1,465,994	-				-0.4
1,465,994	-				-0.6
1,465,994	-				-1.1
1,466,004	+				-0.0
1,466,004	+				-0.1
1,466,004	+				+0.1
1,466,005	-				-1.9
1,466,007	-				+0.0
1,466,007	-				+0.5
1,466,013	+				+1.0
1,466,014	-				-1.7
1,466,014	-				-1.3
1,466,014	-				+0.3
1,466,014	-				+0.1
1,466,014	-				-0.4
1,466,028	-				+2.0
1,466,028	-				-1.6
1,466,795	-				-1.4
1,466,814	-				-1.7
1,466,859	-				-0.6
1,466,880	-				-0.7
1,466,881	+				-1.3
1,466,881	+				-0.2
1,466,881	+				-0.3
1,466,882	-				-1.1
1,466,946	-				-0.5
1,466,946	-				-1.9
1,466,946	-				+0.3
1,467,035	+				-1.3
1,467,035	+				-0.5
1,467,098	+				+1.8
1,467,098	+				+0.3
1,467,098	+				+0.3
1,467,098	+				-2.7
1,467,297	+		DDA3937_RS06575	0.12	-0.5
1,467,298	-		DDA3937_RS06575	0.12	-1.2
1,467,298	-		DDA3937_RS06575	0.12	-1.7
1,467,302	+		DDA3937_RS06575	0.12	-0.3
1,467,303	-		DDA3937_RS06575	0.12	-0.7
1,467,304	+		DDA3937_RS06575	0.12	-0.6
1,467,316	+		DDA3937_RS06575	0.13	+0.2
1,467,316	+		DDA3937_RS06575	0.13	-0.3
1,467,317	-		DDA3937_RS06575	0.13	+1.7
1,467,352	-		DDA3937_RS06575	0.14	+3.4
1,467,356	+		DDA3937_RS06575	0.14	-1.9
1,467,356	+		DDA3937_RS06575	0.14	-2.4
1,467,356	+		DDA3937_RS06575	0.14	-0.1
1,467,357	-		DDA3937_RS06575	0.14	+0.8
1,467,363	-		DDA3937_RS06575	0.14	-1.6
1,467,400	+		DDA3937_RS06575	0.15	+2.4
1,467,401	-		DDA3937_RS06575	0.15	+0.2
1,467,417	-		DDA3937_RS06575	0.16	-0.3
1,467,590	-		DDA3937_RS06575	0.21	+1.6
1,467,590	-		DDA3937_RS06575	0.21	-0.7
1,467,590	-		DDA3937_RS06575	0.21	+1.2
1,467,651	+		DDA3937_RS06575	0.23	+0.8
1,467,651	+		DDA3937_RS06575	0.23	+0.4
1,467,652	-		DDA3937_RS06575	0.23	-0.1
1,467,723	+		DDA3937_RS06575	0.26	-0.3
1,467,896	-		DDA3937_RS06575	0.31	+1.0
1,467,909	+		DDA3937_RS06575	0.31	+0.4
1,467,975	+		DDA3937_RS06575	0.34	+0.2
1,467,975	+		DDA3937_RS06575	0.34	-2.2
1,467,975	+		DDA3937_RS06575	0.34	+1.8
1,467,976	-		DDA3937_RS06575	0.34	-2.3
1,467,976	-		DDA3937_RS06575	0.34	-0.0
1,467,976	-		DDA3937_RS06575	0.34	-0.6
1,468,139	+		DDA3937_RS06575	0.39	-1.4
1,468,139	+		DDA3937_RS06575	0.39	-1.4
1,468,140	-		DDA3937_RS06575	0.39	-0.4
1,468,346	+		DDA3937_RS06575	0.45	+1.5
1,468,346	+		DDA3937_RS06575	0.45	-0.0
1,468,347	-		DDA3937_RS06575	0.45	+1.1
1,468,347	-		DDA3937_RS06575	0.45	-0.3
1,468,348	+		DDA3937_RS06575	0.45	+0.1
1,468,348	+		DDA3937_RS06575	0.45	+0.6
1,468,348	+		DDA3937_RS06575	0.45	-1.2
1,468,348	+		DDA3937_RS06575	0.45	-0.7
1,468,348	+		DDA3937_RS06575	0.45	-0.3
1,468,348	+		DDA3937_RS06575	0.45	-1.1
1,468,348	+		DDA3937_RS06575	0.45	-1.2
1,468,348	+		DDA3937_RS06575	0.45	+1.5
1,468,348	+		DDA3937_RS06575	0.45	+0.5
1,468,348	+		DDA3937_RS06575	0.45	+0.4
1,468,348	+				+0.8
1,468,348	+		DDA3937_RS06575	0.45	+2.0
1,468,348	+		DDA3937_RS06575	0.45	-1.8
1,468,349	-		DDA3937_RS06575	0.45	-1.6
1,468,349	-		DDA3937_RS06575	0.45	+0.7
1,468,349	-		DDA3937_RS06575	0.45	-1.1
1,468,349	-		DDA3937_RS06575	0.45	-2.3
1,468,349	-		DDA3937_RS06575	0.45	+0.3
1,468,349	-		DDA3937_RS06575	0.45	+0.4
1,468,349	-		DDA3937_RS06575	0.45	+1.0
1,468,349	-		DDA3937_RS06575	0.45	-0.6
1,468,349	-		DDA3937_RS06575	0.45	+0.7
1,468,555	+		DDA3937_RS06575	0.52	-0.5
1,468,555	+		DDA3937_RS06575	0.52	+0.8
1,468,556	-		DDA3937_RS06575	0.52	-0.3
1,468,613	-		DDA3937_RS06575	0.54	-0.1
1,468,725	+		DDA3937_RS06575	0.57	+1.0
1,468,726	-		DDA3937_RS06575	0.57	-2.3
1,468,763	+		DDA3937_RS06575	0.59	+3.6
1,468,763	+		DDA3937_RS06575	0.59	+0.4
1,468,764	-		DDA3937_RS06575	0.59	+0.9
1,468,764	-		DDA3937_RS06575	0.59	+0.3
1,468,841	+		DDA3937_RS06575	0.61	+0.3
1,468,892	+		DDA3937_RS06575	0.63	+0.5
1,468,892	+		DDA3937_RS06575	0.63	-0.4
1,468,892	+		DDA3937_RS06575	0.63	-1.3
1,468,892	+		DDA3937_RS06575	0.63	+0.3
1,468,892	+		DDA3937_RS06575	0.63	-3.0
1,468,892	+		DDA3937_RS06575	0.63	-0.3
1,468,892	+		DDA3937_RS06575	0.63	-0.9
1,468,892	+		DDA3937_RS06575	0.63	+0.6
1,468,893	-		DDA3937_RS06575	0.63	-0.5
1,468,893	-		DDA3937_RS06575	0.63	+1.6
1,468,893	-		DDA3937_RS06575	0.63	+0.8
1,468,893	-		DDA3937_RS06575	0.63	+0.1
1,468,893	-		DDA3937_RS06575	0.63	-1.0
1,468,893	-		DDA3937_RS06575	0.63	-1.7
1,468,893	-		DDA3937_RS06575	0.63	+0.6
1,468,893	-		DDA3937_RS06575	0.63	+1.4
1,468,893	-		DDA3937_RS06575	0.63	+0.7
1,468,893	-		DDA3937_RS06575	0.63	-0.1
1,468,929	-		DDA3937_RS06575	0.64	-1.1
1,468,929	-		DDA3937_RS06575	0.64	-0.3
1,468,929	-		DDA3937_RS06575	0.64	+0.3
1,469,007	+		DDA3937_RS06575	0.66	+0.5
1,469,008	-		DDA3937_RS06575	0.66	-0.2
1,469,008	-		DDA3937_RS06575	0.66	+0.3
1,469,008	-		DDA3937_RS06575	0.66	+0.9
1,469,008	-		DDA3937_RS06575	0.66	+0.1
1,469,060	+		DDA3937_RS06575	0.68	+1.8
1,469,089	+		DDA3937_RS06575	0.69	-0.2
1,469,089	+		DDA3937_RS06575	0.69	-0.0
1,469,089	+		DDA3937_RS06575	0.69	-0.1
1,469,090	-		DDA3937_RS06575	0.69	+0.3
1,469,229	-		DDA3937_RS06575	0.74	+0.3
1,469,269	-		DDA3937_RS06575	0.75	+0.9
1,469,323	-		DDA3937_RS06575	0.77	+0.4
1,469,374	+		DDA3937_RS06575	0.78	+1.8
1,469,374	+		DDA3937_RS06575	0.78	+1.4
1,469,374	+		DDA3937_RS06575	0.78	+1.3
1,469,374	+		DDA3937_RS06575	0.78	+2.9
1,469,375	-		DDA3937_RS06575	0.78	+0.1
1,469,375	-		DDA3937_RS06575	0.78	-0.5
1,469,375	-		DDA3937_RS06575	0.78	-0.1
1,469,375	-		DDA3937_RS06575	0.78	-0.1
1,469,375	-		DDA3937_RS06575	0.78	+1.9
1,469,375	-		DDA3937_RS06575	0.78	-0.6
1,469,501	-		DDA3937_RS06575	0.82	-0.6
1,469,563	+		DDA3937_RS06575	0.84	+4.9
1,469,563	+		DDA3937_RS06575	0.84	+0.3
1,469,563	+		DDA3937_RS06575	0.84	-0.4
1,469,563	+		DDA3937_RS06575	0.84	+2.3
1,469,564	-		DDA3937_RS06575	0.84	-0.6
1,469,564	-		DDA3937_RS06575	0.84	+0.0
1,469,635	+		DDA3937_RS06575	0.86	-1.2
1,469,635	+		DDA3937_RS06575	0.86	-1.6
1,469,636	-		DDA3937_RS06575	0.86	-0.6
1,469,641	+		DDA3937_RS06575	0.87	-0.2
1,469,641	+		DDA3937_RS06575	0.87	-1.3
1,469,641	+		DDA3937_RS06575	0.87	-0.1
1,469,641	+		DDA3937_RS06575	0.87	+0.9
1,469,641	+		DDA3937_RS06575	0.87	+1.1
1,469,641	+				+0.3
1,469,641	+		DDA3937_RS06575	0.87	-0.4
1,469,641	+		DDA3937_RS06575	0.87	+1.2
1,469,642	-		DDA3937_RS06575	0.87	-0.6
1,469,642	-		DDA3937_RS06575	0.87	+0.1
1,469,642	-		DDA3937_RS06575	0.87	-1.2
1,469,642	-		DDA3937_RS06575	0.87	-0.3
1,469,642	-		DDA3937_RS06575	0.87	+0.4
1,469,642	-		DDA3937_RS06575	0.87	-0.5
1,469,693	+		DDA3937_RS06575	0.88	+3.5
1,469,710	-				-0.3
1,469,710	-		DDA3937_RS06575	0.89	-0.3
1,469,722	+		DDA3937_RS06575	0.89	-1.2
1,469,723	-		DDA3937_RS06575	0.89	-1.9
1,469,779	+				-0.7
1,469,780	-				+2.7
1,469,786	-				-2.3
1,469,786	-				+0.1
1,469,786	-				-1.6
1,469,786	-				-0.3
1,469,902	+				-0.2
1,470,059	+				+0.9
1,470,059	+				+2.0
1,470,059	+				-0.9
1,470,059	+				+0.8
1,470,059	+				-0.9
1,470,060	-				+0.8
1,470,060	-				+0.8
1,470,060	-				+1.4
1,470,060	-				+0.3
1,470,119	-				+0.3
1,470,498	+		DDA3937_RS06580	0.29	-2.1
1,470,499	-		DDA3937_RS06580	0.29	+0.4
1,470,499	-		DDA3937_RS06580	0.29	-0.5
1,470,518	+		DDA3937_RS06580	0.30	+1.7
1,470,519	-		DDA3937_RS06580	0.31	-0.1
1,470,519	-		DDA3937_RS06580	0.31	-0.7
1,470,519	-		DDA3937_RS06580	0.31	-1.3
1,470,522	-		DDA3937_RS06580	0.31	+0.0
1,470,612	+		DDA3937_RS06580	0.37	-0.7
1,470,612	+		DDA3937_RS06580	0.37	-0.2
1,470,612	+		DDA3937_RS06580	0.37	+0.4
1,470,612	+		DDA3937_RS06580	0.37	-1.2
1,470,613	-		DDA3937_RS06580	0.37	+0.0
1,470,613	-		DDA3937_RS06580	0.37	+0.2
1,470,613	-		DDA3937_RS06580	0.37	+1.0
1,470,613	-		DDA3937_RS06580	0.37	-0.3
1,470,616	+		DDA3937_RS06580	0.37	+0.2
1,470,617	-		DDA3937_RS06580	0.37	-1.3
1,470,650	+		DDA3937_RS06580	0.39	-0.7
1,470,739	+		DDA3937_RS06580	0.45	-0.8
1,470,740	-		DDA3937_RS06580	0.45	-0.2
1,470,740	-		DDA3937_RS06580	0.45	+0.3
1,470,740	-		DDA3937_RS06580	0.45	-0.1
1,470,773	+		DDA3937_RS06580	0.47	+0.4
1,470,773	+		DDA3937_RS06580	0.47	-0.4
1,470,773	+		DDA3937_RS06580	0.47	-2.1
1,470,773	+				-0.3
1,470,773	+		DDA3937_RS06580	0.47	-2.2
1,470,774	-		DDA3937_RS06580	0.47	+1.0
1,470,774	-		DDA3937_RS06580	0.47	-1.4
1,470,774	-		DDA3937_RS06580	0.47	+1.0
1,470,798	+				-0.6
1,470,897	+		DDA3937_RS06580	0.56	+0.6
1,470,898	-		DDA3937_RS06580	0.56	+0.4
1,470,898	-		DDA3937_RS06580	0.56	-0.3
1,471,032	-				+0.7
1,471,050	+		DDA3937_RS06580	0.66	-1.0
1,471,051	-		DDA3937_RS06580	0.66	-1.1
1,471,051	-		DDA3937_RS06580	0.66	+0.3