Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06400

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,429,288	+		DDA3937_RS06390	0.31	+1.0
1,429,289	-		DDA3937_RS06390	0.32	+1.0
1,429,308	+		DDA3937_RS06390	0.53	+2.2
1,429,308	+		DDA3937_RS06390	0.53	+1.3
1,429,308	+		DDA3937_RS06390	0.53	+0.6
1,429,309	-		DDA3937_RS06390	0.54	-0.7
1,429,309	-		DDA3937_RS06390	0.54	-1.2
1,429,309	-		DDA3937_RS06390	0.54	+0.1
1,429,311	+		DDA3937_RS06390	0.57	-2.2
1,429,312	-		DDA3937_RS06390	0.58	-1.5
1,429,320	+		DDA3937_RS06390	0.67	-0.2
1,429,320	+		DDA3937_RS06390	0.67	-0.2
1,429,321	-		DDA3937_RS06390	0.68	-2.0
1,429,321	-		DDA3937_RS06390	0.68	+0.9
1,429,321	-		DDA3937_RS06390	0.68	+2.4
1,429,321	-		DDA3937_RS06390	0.68	+1.2
1,429,323	-		DDA3937_RS06390	0.70	+1.9
1,429,343	+				-2.1
1,429,343	+				-1.5
1,429,461	-				-0.7
1,429,461	-				-1.3
1,429,547	+				+0.3
1,429,547	+				-1.5
1,429,548	-				+0.8
1,429,556	+				-0.3
1,429,556	+				-0.2
1,429,557	-				-1.0
1,429,557	-				+0.5
1,429,585	-				+0.3
1,429,585	-				-1.5
1,429,585	-				+0.3
1,429,585	-				-0.1
1,429,585	-				-0.8
1,429,585	-				-0.6
1,429,585	-				+0.2
1,429,638	+				-0.7
1,429,648	+				-1.3
1,429,649	-				-0.0
1,429,769	+				+0.3
1,429,793	+				-0.9
1,429,793	+				+1.1
1,429,793	+				-2.3
1,429,793	+				-0.9
1,429,793	+				+0.5
1,429,793	+				-1.2
1,429,793	+				-0.2
1,429,793	+				+0.7
1,429,793	+				-1.7
1,429,793	+				+0.5
1,429,793	+				-2.6
1,429,793	+				-1.6
1,429,793	+				+0.2
1,429,793	+				+0.3
1,429,794	-				-0.2
1,429,794	-				+0.0
1,429,794	-				-0.2
1,429,794	-				+0.1
1,429,794	-				+0.3
1,429,794	-				-0.9
1,429,794	-				-2.1
1,429,794	-				-3.3
1,429,794	-				-0.1
1,429,794	-				-0.3
1,429,794	-				-0.9
1,429,794	-				-0.7
1,429,794	-				-1.1
1,429,794	-				-0.3
1,429,794	-				+0.4
1,429,794	-				-0.4
1,429,794	-				-2.5
1,429,794	-				-1.7
1,429,902	-		DDA3937_RS06395	0.57	+0.7
1,429,902	-		DDA3937_RS06395	0.57	+0.3
1,429,907	+		DDA3937_RS06395	0.59	+2.7
1,429,907	+		DDA3937_RS06395	0.59	-3.4
1,429,907	+		DDA3937_RS06395	0.59	-0.7
1,429,907	+		DDA3937_RS06395	0.59	+0.5
1,429,908	-		DDA3937_RS06395	0.60	+0.2
1,429,908	-		DDA3937_RS06395	0.60	-1.5
1,429,908	-		DDA3937_RS06395	0.60	-0.4
1,429,908	-		DDA3937_RS06395	0.60	-0.1
1,429,980	-				-0.2
1,430,079	+				+0.8
1,430,106	+				-0.5
1,430,107	-				+0.5
1,430,196	-				+0.4
1,430,230	+				-0.2
1,430,230	+				+1.5
1,430,231	-				-0.7
1,430,231	-				-1.1
1,430,238	+				+1.0
1,430,238	+				+2.5
1,430,238	+				-0.5
1,430,239	-				-1.2
1,430,239	-				-1.0
1,430,239	-				+0.8
1,430,251	+				-0.2
1,430,379	-		DDA3937_RS06400	0.12	-1.0
1,430,379	-		DDA3937_RS06400	0.12	+0.0
1,430,452	+		DDA3937_RS06400	0.19	-0.5
1,430,452	+		DDA3937_RS06400	0.19	+0.5
1,430,453	-		DDA3937_RS06400	0.19	+1.8
1,430,570	+		DDA3937_RS06400	0.32	+0.4
1,430,571	-		DDA3937_RS06400	0.32	-0.2
1,430,572	+		DDA3937_RS06400	0.32	+1.5
1,430,572	+		DDA3937_RS06400	0.32	-2.1
1,430,573	-		DDA3937_RS06400	0.32	-1.1
1,430,573	-		DDA3937_RS06400	0.32	-1.1
1,430,647	+		DDA3937_RS06400	0.40	-1.3
1,430,758	+		DDA3937_RS06400	0.51	-0.4
1,430,765	+		DDA3937_RS06400	0.52	-0.7
1,430,765	+		DDA3937_RS06400	0.52	-0.2
1,430,765	+		DDA3937_RS06400	0.52	-1.5
1,430,766	-		DDA3937_RS06400	0.52	+0.2
1,430,766	-		DDA3937_RS06400	0.52	+0.8
1,430,766	-		DDA3937_RS06400	0.52	-0.3
1,430,842	+		DDA3937_RS06400	0.60	-0.4
1,430,842	+		DDA3937_RS06400	0.60	-2.0
1,430,842	+		DDA3937_RS06400	0.60	-0.5
1,430,842	+		DDA3937_RS06400	0.60	-0.6
1,431,137	+				-0.3
1,431,137	+				+0.5
1,431,137	+				+0.4
1,431,138	-				+0.7
1,431,138	-				-1.3
1,431,179	+				+0.1
1,431,179	+				-0.8
1,431,180	-				+1.3
1,431,224	+				-1.5
1,431,238	+				+2.7
1,431,239	-				-0.6
1,431,244	+				-1.2
1,431,244	+				-1.3
1,431,244	+				+0.7
1,431,244	+				-0.1
1,431,245	-				-0.7
1,431,245	-				-0.7
1,431,291	-				+0.5
1,431,291	-				-0.5
1,431,559	+		DDA3937_RS06405	0.21	-1.9
1,431,560	-		DDA3937_RS06405	0.21	-1.1
1,431,560	-		DDA3937_RS06405	0.21	-0.5
1,431,572	-		DDA3937_RS06405	0.22	+1.7
1,431,572	-				-0.3
1,431,700	+		DDA3937_RS06405	0.31	-0.0
1,431,700	+		DDA3937_RS06405	0.31	-0.4
1,431,700	+		DDA3937_RS06405	0.31	+0.4
1,431,700	+		DDA3937_RS06405	0.31	-1.5
1,431,700	+		DDA3937_RS06405	0.31	-1.7
1,431,700	+		DDA3937_RS06405	0.31	+0.5
1,431,700	+		DDA3937_RS06405	0.31	-0.2
1,431,700	+		DDA3937_RS06405	0.31	+0.1
1,431,700	+		DDA3937_RS06405	0.31	+2.3
1,431,700	+		DDA3937_RS06405	0.31	-0.3
1,431,700	+		DDA3937_RS06405	0.31	-0.9
1,431,700	+		DDA3937_RS06405	0.31	-0.5
1,431,700	+		DDA3937_RS06405	0.31	-0.5
1,431,700	+		DDA3937_RS06405	0.31	+0.5
1,431,700	+		DDA3937_RS06405	0.31	-0.4
1,431,701	-		DDA3937_RS06405	0.31	+1.8
1,431,701	-		DDA3937_RS06405	0.31	-0.9
1,431,701	-		DDA3937_RS06405	0.31	+1.1
1,431,701	-		DDA3937_RS06405	0.31	+1.1
1,431,701	-		DDA3937_RS06405	0.31	+0.8
1,431,701	-		DDA3937_RS06405	0.31	-0.5
1,431,701	-		DDA3937_RS06405	0.31	+2.3
1,431,701	-		DDA3937_RS06405	0.31	+0.1
1,431,701	-		DDA3937_RS06405	0.31	-1.4
1,431,701	-		DDA3937_RS06405	0.31	-0.8
1,431,701	-		DDA3937_RS06405	0.31	+0.2
1,431,702	+		DDA3937_RS06405	0.31	-1.0
1,431,703	-		DDA3937_RS06405	0.31	-1.3
1,431,703	-		DDA3937_RS06405	0.31	-0.3
1,431,703	-		DDA3937_RS06405	0.31	-0.1
1,431,798	+		DDA3937_RS06405	0.38	-0.7
1,431,799	-		DDA3937_RS06405	0.38	+0.1
1,431,922	+		DDA3937_RS06405	0.47	-1.9
1,431,922	+		DDA3937_RS06405	0.47	-0.3
1,431,922	+		DDA3937_RS06405	0.47	-0.6
1,431,922	+		DDA3937_RS06405	0.47	-1.0
1,431,922	+		DDA3937_RS06405	0.47	+0.4
1,431,922	+		DDA3937_RS06405	0.47	-0.6
1,431,922	+		DDA3937_RS06405	0.47	-0.5
1,431,923	-		DDA3937_RS06405	0.47	-1.3
1,431,923	-		DDA3937_RS06405	0.47	-1.4
1,432,023	-		DDA3937_RS06405	0.54	+1.5
1,432,072	-		DDA3937_RS06405	0.57	-0.3
1,432,080	+		DDA3937_RS06405	0.58	-0.5
1,432,080	+		DDA3937_RS06405	0.58	+0.3
1,432,081	-		DDA3937_RS06405	0.58	+0.3
1,432,081	-		DDA3937_RS06405	0.58	-0.7
1,432,105	+		DDA3937_RS06405	0.59	-1.6
1,432,136	+		DDA3937_RS06405	0.61	-1.4