Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06305

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,406,968	-		DDA3937_RS06300	0.26	+0.7
1,406,973	+		DDA3937_RS06300	0.27	-2.1
1,406,991	+		DDA3937_RS06300	0.28	-0.8
1,407,028	+		DDA3937_RS06300	0.31	+1.3
1,407,028	+		DDA3937_RS06300	0.31	-1.3
1,407,028	+		DDA3937_RS06300	0.31	-2.5
1,407,150	+		DDA3937_RS06300	0.41	-0.9
1,407,151	-		DDA3937_RS06300	0.41	-1.5
1,407,175	-		DDA3937_RS06300	0.43	+0.7
1,407,257	+		DDA3937_RS06300	0.50	+0.2
1,407,257	+		DDA3937_RS06300	0.50	-0.5
1,407,258	-				+0.3
1,407,258	-		DDA3937_RS06300	0.50	-1.9
1,407,258	-		DDA3937_RS06300	0.50	-0.1
1,407,286	-		DDA3937_RS06300	0.52	-2.0
1,407,330	+		DDA3937_RS06300	0.56	-0.3
1,407,369	+		DDA3937_RS06300	0.59	+0.1
1,407,369	+		DDA3937_RS06300	0.59	+2.2
1,407,369	+		DDA3937_RS06300	0.59	+1.3
1,407,369	+		DDA3937_RS06300	0.59	+0.1
1,407,369	+		DDA3937_RS06300	0.59	+0.3
1,407,370	-		DDA3937_RS06300	0.59	-2.1
1,407,370	-				-0.7
1,407,370	-		DDA3937_RS06300	0.59	-0.8
1,407,371	+		DDA3937_RS06300	0.59	-2.1
1,407,371	+				-1.1
1,407,371	+		DDA3937_RS06300	0.59	-0.6
1,407,371	+		DDA3937_RS06300	0.59	-1.9
1,407,371	+		DDA3937_RS06300	0.59	-0.7
1,407,371	+		DDA3937_RS06300	0.59	-3.5
1,407,371	+		DDA3937_RS06300	0.59	-0.0
1,407,371	+		DDA3937_RS06300	0.59	-1.8
1,407,372	-		DDA3937_RS06300	0.59	-0.7
1,407,372	-		DDA3937_RS06300	0.59	+0.2
1,407,372	-		DDA3937_RS06300	0.59	-1.1
1,407,556	+		DDA3937_RS06300	0.74	-1.3
1,407,556	+		DDA3937_RS06300	0.74	-2.9
1,407,557	-		DDA3937_RS06300	0.74	+1.3
1,407,563	+		DDA3937_RS06300	0.75	+0.1
1,407,564	-		DDA3937_RS06300	0.75	-1.5
1,407,564	-		DDA3937_RS06300	0.75	+0.6
1,407,565	+		DDA3937_RS06300	0.75	-0.4
1,407,566	-		DDA3937_RS06300	0.75	-1.7
1,407,774	+				+0.0
1,407,800	+				-1.1
1,407,896	+				-2.3
1,407,896	+				-2.1
1,407,896	+				-1.1
1,407,896	+				-1.2
1,407,897	-				-0.5
1,407,897	-				+0.2
1,407,897	-				+2.0
1,407,897	-				-1.1
1,407,897	-				-0.2
1,407,897	-				+0.3
1,407,902	+				-2.1
1,407,939	+				-0.9
1,407,939	+				-1.9
1,407,940	-				+0.8
1,408,090	+		DDA3937_RS06305	0.16	-0.7
1,408,173	-		DDA3937_RS06305	0.24	-1.9
1,408,173	-		DDA3937_RS06305	0.24	-0.3
1,408,173	-		DDA3937_RS06305	0.24	-0.8
1,408,175	+		DDA3937_RS06305	0.24	+0.0
1,408,175	+		DDA3937_RS06305	0.24	-0.7
1,408,175	+		DDA3937_RS06305	0.24	-1.5
1,408,175	+		DDA3937_RS06305	0.24	-1.5
1,408,175	+		DDA3937_RS06305	0.24	-2.3
1,408,175	+		DDA3937_RS06305	0.24	-1.3
1,408,175	+		DDA3937_RS06305	0.24	-0.5
1,408,175	+		DDA3937_RS06305	0.24	+0.5
1,408,175	+		DDA3937_RS06305	0.24	+0.3
1,408,176	-		DDA3937_RS06305	0.24	-0.7
1,408,176	-		DDA3937_RS06305	0.24	-0.3
1,408,176	-		DDA3937_RS06305	0.24	+0.3
1,408,176	-		DDA3937_RS06305	0.24	+2.3
1,408,176	-		DDA3937_RS06305	0.24	-1.9
1,408,176	-		DDA3937_RS06305	0.24	-1.1
1,408,176	-				+1.3
1,408,176	-		DDA3937_RS06305	0.24	-0.9
1,408,177	+		DDA3937_RS06305	0.24	-0.9
1,408,178	-		DDA3937_RS06305	0.24	-0.8
1,408,178	-		DDA3937_RS06305	0.24	-1.5
1,408,329	-		DDA3937_RS06305	0.37	-2.4
1,408,580	+		DDA3937_RS06305	0.59	-1.9
1,408,580	+		DDA3937_RS06305	0.59	-2.1
1,408,581	-		DDA3937_RS06305	0.59	+0.9
1,408,581	-		DDA3937_RS06305	0.59	-0.1
1,408,757	-		DDA3937_RS06305	0.74	-1.1
1,408,903	+		DDA3937_RS06305	0.87	-0.1
1,408,935	+		DDA3937_RS06305	0.90	-2.8
1,409,048	+				-1.3
1,409,048	+				-1.5
1,409,048	+				-1.1
1,409,048	+				-1.3
1,409,048	+				-0.5
1,409,048	+				-1.1
1,409,049	-				-0.1
1,409,049	-				-2.2
1,409,049	-				-0.1
1,409,054	+				-0.7
1,409,054	+				-0.4
1,409,054	+				-1.5
1,409,054	+				-2.1
1,409,054	+				-0.1
1,409,055	-				-1.5
1,409,055	-				-0.3
1,409,055	-				-2.0
1,409,055	-				-0.7
1,409,056	+				-1.5
1,409,057	-				-0.7
1,409,057	-				+0.4
1,409,057	-				+0.7
1,409,255	-		DDA3937_RS06310	0.22	-0.4
1,409,325	+		DDA3937_RS06310	0.31	-0.2
1,409,326	-		DDA3937_RS06310	0.31	+0.3
1,409,493	+		DDA3937_RS06310	0.52	+0.2
1,409,494	-		DDA3937_RS06310	0.52	-0.7
1,409,514	+				+0.3
1,409,515	-		DDA3937_RS06310	0.55	+0.4
1,409,607	+		DDA3937_RS06310	0.66	-0.1
1,409,607	+		DDA3937_RS06310	0.66	-0.9
1,409,607	+		DDA3937_RS06310	0.66	-0.4
1,409,611	+		DDA3937_RS06310	0.67	+1.6
1,409,611	+		DDA3937_RS06310	0.67	-0.2
1,409,611	+		DDA3937_RS06310	0.67	-0.4
1,409,611	+		DDA3937_RS06310	0.67	-1.1
1,409,611	+		DDA3937_RS06310	0.67	+0.2
1,409,612	-		DDA3937_RS06310	0.67	+0.3
1,409,612	-		DDA3937_RS06310	0.67	-0.1
1,409,612	-		DDA3937_RS06310	0.67	+1.1
1,409,612	-		DDA3937_RS06310	0.67	+0.1
1,409,655	+		DDA3937_RS06310	0.72	-0.5
1,409,655	+		DDA3937_RS06310	0.72	+0.2
1,409,655	+		DDA3937_RS06310	0.72	-1.6
1,409,655	+		DDA3937_RS06310	0.72	-0.6
1,409,655	+		DDA3937_RS06310	0.72	+0.7
1,409,655	+		DDA3937_RS06310	0.72	-0.5
1,409,656	-		DDA3937_RS06310	0.73	-0.1
1,409,656	-		DDA3937_RS06310	0.73	-0.5
1,409,656	-		DDA3937_RS06310	0.73	-0.8
1,409,666	-		DDA3937_RS06310	0.74	-0.5
1,409,730	+		DDA3937_RS06310	0.82	+0.8
1,409,731	-		DDA3937_RS06310	0.82	-0.3
1,409,731	-		DDA3937_RS06310	0.82	-0.8
1,409,911	+				+0.7
1,409,912	-				-1.2
1,409,936	+				+0.1
1,409,937	-				-0.8
1,409,952	+				-0.6
1,409,952	+				-1.7
1,409,952	+				+1.6
1,409,952	+				-0.9
1,409,953	-				+0.6
1,409,953	-				-0.1
1,409,953	-				+0.9
1,409,953	-				-0.3
1,409,955	+				-1.7
1,409,955	+				+0.4
1,409,955	+				-0.5
1,409,955	+				+1.6
1,409,955	+				+0.0
1,409,956	-				+0.6
1,409,956	-				+1.1
1,409,956	-				-0.1
1,410,031	-				-0.4