Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04875 and DDA3937_RS04880 are separated by 425 nucleotides DDA3937_RS04880 and DDA3937_RS04885 are separated by 297 nucleotides
DDA3937_RS04875: DDA3937_RS04875 - IS110 family transposase, at 1,091,756 to 1,092,745
_RS04875
DDA3937_RS04880: DDA3937_RS04880 - IS110-like element ISEch4 family transposase, at 1,093,171 to 1,094,175
_RS04880
DDA3937_RS04885: DDA3937_RS04885 - L-asparagine permease, at 1,094,473 to 1,095,930
_RS04885
Position (kb) 1093
1094
1095 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1092.950 kb on + strand at 1092.950 kb on + strand at 1092.950 kb on + strand at 1092.950 kb on + strand at 1093.050 kb on + strand at 1093.103 kb on + strand at 1093.103 kb on + strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.256 kb on + strand at 1094.368 kb on + strand at 1094.413 kb on + strand at 1094.413 kb on + strand at 1094.475 kb on - strand at 1094.475 kb on - strand at 1094.586 kb on + strand at 1094.682 kb on + strand, within DDA3937_RS04885 at 1094.683 kb on - strand, within DDA3937_RS04885 at 1094.751 kb on + strand, within DDA3937_RS04885 at 1094.751 kb on + strand, within DDA3937_RS04885 at 1094.752 kb on - strand, within DDA3937_RS04885 at 1094.752 kb on - strand, within DDA3937_RS04885 at 1094.769 kb on + strand, within DDA3937_RS04885 at 1094.770 kb on - strand, within DDA3937_RS04885 at 1094.770 kb on - strand, within DDA3937_RS04885 at 1094.772 kb on + strand, within DDA3937_RS04885 at 1094.825 kb on + strand, within DDA3937_RS04885 at 1094.847 kb on + strand, within DDA3937_RS04885 at 1094.847 kb on + strand, within DDA3937_RS04885 at 1094.847 kb on + strand, within DDA3937_RS04885 at 1094.848 kb on - strand at 1094.848 kb on - strand at 1094.848 kb on - strand, within DDA3937_RS04885 at 1094.848 kb on - strand, within DDA3937_RS04885 at 1094.966 kb on + strand, within DDA3937_RS04885 at 1094.966 kb on + strand, within DDA3937_RS04885 at 1094.966 kb on + strand, within DDA3937_RS04885 at 1095.012 kb on + strand, within DDA3937_RS04885 at 1095.032 kb on + strand, within DDA3937_RS04885 at 1095.032 kb on + strand, within DDA3937_RS04885 at 1095.032 kb on + strand, within DDA3937_RS04885 at 1095.033 kb on - strand, within DDA3937_RS04885 at 1095.033 kb on - strand at 1095.033 kb on - strand, within DDA3937_RS04885 at 1095.033 kb on - strand, within DDA3937_RS04885 at 1095.033 kb on - strand, within DDA3937_RS04885 at 1095.135 kb on - strand, within DDA3937_RS04885
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,092,950 + -0.3 1,092,950 + -0.5 1,092,950 + -2.0 1,092,950 + -1.3 1,093,050 + -0.3 1,093,103 + -0.9 1,093,103 + -0.1 1,093,104 - -0.1 1,093,104 - -1.1 1,093,104 - -0.1 1,093,104 - -0.7 1,093,104 - -0.7 1,093,104 - -0.9 1,093,104 - +0.3 1,093,256 + -0.8 1,094,368 + -0.7 1,094,413 + -0.7 1,094,413 + +1.7 1,094,475 - +0.6 1,094,475 - +0.9 1,094,586 + -2.3 1,094,682 + DDA3937_RS04885 0.14 +0.4 1,094,683 - DDA3937_RS04885 0.14 -1.8 1,094,751 + DDA3937_RS04885 0.19 -0.3 1,094,751 + DDA3937_RS04885 0.19 -2.8 1,094,752 - DDA3937_RS04885 0.19 -0.4 1,094,752 - DDA3937_RS04885 0.19 +1.1 1,094,769 + DDA3937_RS04885 0.20 -0.3 1,094,770 - DDA3937_RS04885 0.20 +0.2 1,094,770 - DDA3937_RS04885 0.20 -0.7 1,094,772 + DDA3937_RS04885 0.21 -0.3 1,094,825 + DDA3937_RS04885 0.24 -0.9 1,094,847 + DDA3937_RS04885 0.26 -2.4 1,094,847 + DDA3937_RS04885 0.26 +0.3 1,094,847 + DDA3937_RS04885 0.26 -0.8 1,094,848 - -1.0 1,094,848 - +0.3 1,094,848 - DDA3937_RS04885 0.26 -0.1 1,094,848 - DDA3937_RS04885 0.26 +0.5 1,094,966 + DDA3937_RS04885 0.34 -0.7 1,094,966 + DDA3937_RS04885 0.34 +0.4 1,094,966 + DDA3937_RS04885 0.34 -0.5 1,095,012 + DDA3937_RS04885 0.37 -1.3 1,095,032 + DDA3937_RS04885 0.38 +0.5 1,095,032 + DDA3937_RS04885 0.38 -0.5 1,095,032 + DDA3937_RS04885 0.38 +0.3 1,095,033 - DDA3937_RS04885 0.38 -0.8 1,095,033 - +1.6 1,095,033 - DDA3937_RS04885 0.38 -1.8 1,095,033 - DDA3937_RS04885 0.38 +0.4 1,095,033 - DDA3937_RS04885 0.38 +0.6 1,095,135 - DDA3937_RS04885 0.45 +0.7
Or see this region's nucleotide sequence