Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04480 and DDA3937_RS04485 are separated by 47 nucleotides DDA3937_RS04485 and DDA3937_RS04490 are separated by 406 nucleotides
DDA3937_RS04480: DDA3937_RS04480 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 989,304 to 991,031
_RS04480
DDA3937_RS04485: DDA3937_RS04485 - phosphocarrier protein Hpr, at 991,079 to 991,336
_RS04485
DDA3937_RS04490: DDA3937_RS04490 - cysteine synthase A, at 991,743 to 992,711
_RS04490
Position (kb) 991
992 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 990.082 kb on + strand, within DDA3937_RS04480 at 990.280 kb on + strand, within DDA3937_RS04480 at 990.296 kb on - strand, within DDA3937_RS04480 at 990.464 kb on + strand, within DDA3937_RS04480 at 990.465 kb on - strand, within DDA3937_RS04480 at 990.495 kb on - strand, within DDA3937_RS04480 at 990.803 kb on + strand, within DDA3937_RS04480 at 990.804 kb on - strand, within DDA3937_RS04480 at 991.015 kb on - strand at 991.015 kb on - strand at 991.032 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.043 kb on - strand at 991.062 kb on + strand at 991.231 kb on + strand, within DDA3937_RS04485 at 991.232 kb on - strand, within DDA3937_RS04485 at 991.232 kb on - strand, within DDA3937_RS04485 at 991.319 kb on + strand at 991.319 kb on + strand at 991.320 kb on - strand at 991.320 kb on - strand at 991.361 kb on + strand at 991.380 kb on + strand at 991.380 kb on + strand at 991.381 kb on - strand at 991.387 kb on + strand at 991.388 kb on - strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.397 kb on - strand at 991.397 kb on - strand at 991.401 kb on - strand at 991.406 kb on + strand at 991.407 kb on - strand at 991.561 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.568 kb on - strand at 991.568 kb on - strand at 991.590 kb on + strand at 991.621 kb on - strand at 991.627 kb on + strand at 991.653 kb on + strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.658 kb on - strand at 991.717 kb on - strand at 991.744 kb on + strand at 991.745 kb on - strand at 991.745 kb on - strand at 991.745 kb on - strand at 991.790 kb on + strand at 992.149 kb on + strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.299 kb on + strand, within DDA3937_RS04490
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 990,082 + DDA3937_RS04480 0.45 -2.5 990,280 + DDA3937_RS04480 0.56 -0.2 990,296 - DDA3937_RS04480 0.57 +0.8 990,464 + DDA3937_RS04480 0.67 -1.0 990,465 - DDA3937_RS04480 0.67 -1.1 990,495 - DDA3937_RS04480 0.69 -1.9 990,803 + DDA3937_RS04480 0.87 -0.1 990,804 - DDA3937_RS04480 0.87 -2.1 991,015 - -0.1 991,015 - -1.2 991,032 - +0.3 991,038 - -0.2 991,038 - -1.0 991,038 - -2.0 991,038 - -3.3 991,043 - -1.1 991,062 + -2.0 991,231 + DDA3937_RS04485 0.59 -0.3 991,232 - DDA3937_RS04485 0.59 +0.6 991,232 - DDA3937_RS04485 0.59 +0.9 991,319 + -2.1 991,319 + -0.7 991,320 - -0.4 991,320 - +0.6 991,361 + -2.2 991,380 + -2.5 991,380 + -0.7 991,381 - +1.3 991,387 + -0.6 991,388 - +1.7 991,392 + +1.3 991,392 + +0.0 991,392 + +0.1 991,392 + -0.9 991,392 + +0.6 991,392 + -0.3 991,392 + -0.8 991,392 + +0.9 991,392 + -0.5 991,392 + -0.9 991,392 + -1.1 991,392 + -0.4 991,392 + -0.2 991,392 + +1.0 991,392 + +0.5 991,392 + -0.1 991,392 + +0.0 991,392 + +1.3 991,393 - -1.2 991,393 - +1.0 991,393 - +0.2 991,393 - +0.8 991,393 - -0.2 991,393 - +1.9 991,393 - -2.0 991,393 - -0.7 991,396 + -2.0 991,396 + -0.3 991,396 + +0.2 991,396 + -1.2 991,396 + +0.0 991,396 + +0.8 991,396 + -2.6 991,397 - -0.3 991,397 - -0.2 991,401 - -1.2 991,406 + -1.7 991,407 - -1.5 991,561 + -0.1 991,567 + -1.7 991,567 + -1.5 991,567 + -0.3 991,567 + -0.7 991,568 - +1.5 991,568 - -0.7 991,590 + +1.3 991,621 - +0.3 991,627 + -1.6 991,653 + -0.4 991,654 - -2.6 991,654 - -0.1 991,654 - -1.2 991,654 - -0.7 991,658 - -0.9 991,717 - -1.6 991,744 + +0.0 991,745 - +2.6 991,745 - +0.7 991,745 - +0.2 991,790 + +0.3 992,149 + DDA3937_RS04490 0.42 -0.5 992,150 - DDA3937_RS04490 0.42 -2.7 992,150 - DDA3937_RS04490 0.42 +0.0 992,150 - DDA3937_RS04490 0.42 -1.2 992,150 - DDA3937_RS04490 0.42 -0.5 992,299 + DDA3937_RS04490 0.57 +0.2
Or see this region's nucleotide sequence