Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04205

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04200 and DDA3937_RS04205 are separated by 3 nucleotidesDDA3937_RS04205 and DDA3937_RS04210 are separated by 96 nucleotidesDDA3937_RS04210 and DDA3937_RS04215 overlap by 4 nucleotides DDA3937_RS04200: DDA3937_RS04200 - phage major capsid protein, P2 family, at 930,414 to 931,445 _RS04200 DDA3937_RS04205: DDA3937_RS04205 - terminase, at 931,449 to 932,150 _RS04205 DDA3937_RS04210: DDA3937_RS04210 - head completion/stabilization protein, at 932,247 to 932,699 _RS04210 DDA3937_RS04215: DDA3937_RS04215 - phage tail protein, at 932,696 to 933,193 _RS04215 Position (kb) 931 932 933Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 930.453 kb on + strandat 930.453 kb on + strandat 930.478 kb on - strandat 930.502 kb on - strandat 930.668 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.700 kb on - strand, within DDA3937_RS04200at 930.700 kb on - strand, within DDA3937_RS04200at 930.700 kb on - strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.797 kb on - strand, within DDA3937_RS04200at 930.831 kb on - strand, within DDA3937_RS04200at 931.053 kb on + strand, within DDA3937_RS04200at 931.256 kb on + strand, within DDA3937_RS04200at 931.256 kb on + strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.260 kb on + strand, within DDA3937_RS04200at 931.260 kb on + strand, within DDA3937_RS04200at 931.260 kb on + strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.329 kb on + strand, within DDA3937_RS04200at 931.329 kb on + strand, within DDA3937_RS04200at 931.330 kb on - strandat 931.347 kb on + strandat 931.359 kb on + strandat 931.371 kb on + strandat 931.372 kb on - strandat 931.372 kb on - strandat 931.372 kb on - strandat 931.372 kb on - strandat 931.421 kb on + strandat 931.475 kb on + strandat 931.504 kb on + strandat 931.505 kb on - strandat 931.613 kb on - strand, within DDA3937_RS04205at 931.613 kb on - strand, within DDA3937_RS04205at 931.658 kb on - strand, within DDA3937_RS04205at 931.687 kb on - strand, within DDA3937_RS04205at 931.767 kb on - strand, within DDA3937_RS04205at 931.767 kb on - strand, within DDA3937_RS04205at 931.907 kb on + strand, within DDA3937_RS04205at 931.953 kb on - strand, within DDA3937_RS04205at 931.979 kb on - strand, within DDA3937_RS04205at 932.060 kb on - strand, within DDA3937_RS04205at 932.060 kb on - strand, within DDA3937_RS04205at 932.095 kb on + strandat 932.149 kb on - strandat 932.149 kb on - strandat 932.157 kb on - strandat 932.271 kb on + strandat 932.387 kb on - strand, within DDA3937_RS04210at 932.695 kb on + strandat 932.696 kb on - strandat 932.696 kb on - strandat 932.791 kb on + strand, within DDA3937_RS04215at 932.825 kb on + strand, within DDA3937_RS04215at 932.825 kb on + strand, within DDA3937_RS04215at 932.826 kb on - strand, within DDA3937_RS04215at 932.951 kb on + strand, within DDA3937_RS04215at 932.951 kb on + strand, within DDA3937_RS04215at 932.951 kb on + strand, within DDA3937_RS04215at 932.951 kb on + strand, within DDA3937_RS04215at 932.952 kb on - strand, within DDA3937_RS04215at 932.952 kb on - strand, within DDA3937_RS04215

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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930,453 + -0.6
930,453 + -1.7
930,478 - +1.0
930,502 - -1.2
930,668 + DDA3937_RS04200 0.25 +1.0
930,699 + DDA3937_RS04200 0.28 -1.9
930,699 + DDA3937_RS04200 0.28 +2.2
930,699 + DDA3937_RS04200 0.28 -0.7
930,699 + DDA3937_RS04200 0.28 -1.2
930,699 + DDA3937_RS04200 0.28 -1.2
930,700 - DDA3937_RS04200 0.28 -0.2
930,700 - DDA3937_RS04200 0.28 -0.7
930,700 - DDA3937_RS04200 0.28 +0.1
930,701 + DDA3937_RS04200 0.28 +0.7
930,701 + DDA3937_RS04200 0.28 +0.3
930,701 + DDA3937_RS04200 0.28 +0.3
930,701 + DDA3937_RS04200 0.28 -0.7
930,702 - DDA3937_RS04200 0.28 -0.8
930,702 - DDA3937_RS04200 0.28 +1.2
930,702 - DDA3937_RS04200 0.28 -0.6
930,702 - DDA3937_RS04200 0.28 -0.8
930,797 - DDA3937_RS04200 0.37 +2.0
930,831 - DDA3937_RS04200 0.40 -1.1
931,053 + DDA3937_RS04200 0.62 +0.2
931,256 + DDA3937_RS04200 0.82 -2.6
931,256 + DDA3937_RS04200 0.82 -2.3
931,257 - DDA3937_RS04200 0.82 +0.5
931,257 - DDA3937_RS04200 0.82 +0.6
931,257 - DDA3937_RS04200 0.82 +0.6
931,257 - DDA3937_RS04200 0.82 +1.2
931,257 - DDA3937_RS04200 0.82 +0.8
931,257 - DDA3937_RS04200 0.82 -0.5
931,257 - DDA3937_RS04200 0.82 +0.2
931,257 - DDA3937_RS04200 0.82 +1.4
931,257 - DDA3937_RS04200 0.82 +1.8
931,257 - DDA3937_RS04200 0.82 -2.4
931,257 - DDA3937_RS04200 0.82 +0.5
931,257 - DDA3937_RS04200 0.82 -0.0
931,260 + DDA3937_RS04200 0.82 -1.8
931,260 + DDA3937_RS04200 0.82 -1.0
931,260 + DDA3937_RS04200 0.82 -3.2
931,261 - DDA3937_RS04200 0.82 +0.8
931,261 - DDA3937_RS04200 0.82 -0.3
931,261 - DDA3937_RS04200 0.82 -0.8
931,261 - DDA3937_RS04200 0.82 -1.2
931,261 - DDA3937_RS04200 0.82 -0.0
931,261 - DDA3937_RS04200 0.82 +0.6
931,261 - DDA3937_RS04200 0.82 -0.9
931,329 + DDA3937_RS04200 0.89 -3.9
931,329 + DDA3937_RS04200 0.89 -2.1
931,330 - -0.2
931,347 + -3.0
931,359 + -1.0
931,371 + -3.1
931,372 - -2.0
931,372 - -0.9
931,372 - +0.3
931,372 - +0.1
931,421 + -0.5
931,475 + -2.2
931,504 + -1.7
931,505 - -1.8
931,613 - DDA3937_RS04205 0.23 -0.7
931,613 - DDA3937_RS04205 0.23 +0.9
931,658 - DDA3937_RS04205 0.30 +0.5
931,687 - DDA3937_RS04205 0.34 +1.0
931,767 - DDA3937_RS04205 0.45 -0.9
931,767 - DDA3937_RS04205 0.45 -0.2
931,907 + DDA3937_RS04205 0.65 -3.0
931,953 - DDA3937_RS04205 0.72 +2.2
931,979 - DDA3937_RS04205 0.75 -1.0
932,060 - DDA3937_RS04205 0.87 +0.5
932,060 - DDA3937_RS04205 0.87 +1.3
932,095 + -1.0
932,149 - -0.9
932,149 - -1.1
932,157 - +0.8
932,271 + +4.0
932,387 - DDA3937_RS04210 0.31 +0.1
932,695 + +0.6
932,696 - +0.5
932,696 - +1.7
932,791 + DDA3937_RS04215 0.19 +0.7
932,825 + DDA3937_RS04215 0.26 +0.8
932,825 + DDA3937_RS04215 0.26 -1.5
932,826 - DDA3937_RS04215 0.26 +0.2
932,951 + DDA3937_RS04215 0.51 +0.0
932,951 + DDA3937_RS04215 0.51 +1.8
932,951 + DDA3937_RS04215 0.51 +0.5
932,951 + DDA3937_RS04215 0.51 -2.1
932,952 - DDA3937_RS04215 0.51 -0.9
932,952 - DDA3937_RS04215 0.51 +0.9

Or see this region's nucleotide sequence