Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04135 and DDA3937_RS23030 are separated by 123 nucleotides DDA3937_RS23030 and DDA3937_RS04140 are separated by 118 nucleotides DDA3937_RS04140 and DDA3937_RS04145 are separated by 32 nucleotides DDA3937_RS04145 and DDA3937_RS23480 are separated by 96 nucleotides DDA3937_RS23480 and DDA3937_RS04150 are separated by 12 nucleotides
DDA3937_RS04135: DDA3937_RS04135 - helix-turn-helix domain-containing protein, at 918,861 to 919,712
_RS04135
DDA3937_RS23030: DDA3937_RS23030 - helix-turn-helix domain containing protein, at 919,836 to 920,054
_RS23030
DDA3937_RS04140: DDA3937_RS04140 - hypothetical protein, at 920,173 to 920,394
_RS04140
DDA3937_RS04145: DDA3937_RS04145 - phage regulatory CII family protein, at 920,427 to 920,936
_RS04145
DDA3937_RS23480: DDA3937_RS23480 - hypothetical protein, at 921,033 to 921,188
_RS23480
DDA3937_RS04150: DDA3937_RS04150 - hypothetical protein, at 921,201 to 921,530
_RS04150
Position (kb) 920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 920.069 kb on - strand at 920.131 kb on - strand at 920.134 kb on - strand at 920.157 kb on + strand at 920.173 kb on - strand at 920.186 kb on + strand at 920.227 kb on + strand, within DDA3937_RS04140 at 920.289 kb on - strand, within DDA3937_RS04140 at 920.289 kb on - strand, within DDA3937_RS04140 at 920.437 kb on - strand at 920.710 kb on - strand, within DDA3937_RS04145 at 920.710 kb on - strand, within DDA3937_RS04145 at 920.744 kb on - strand, within DDA3937_RS04145 at 920.772 kb on - strand, within DDA3937_RS04145 at 920.798 kb on - strand, within DDA3937_RS04145 at 920.798 kb on - strand, within DDA3937_RS04145 at 920.798 kb on - strand, within DDA3937_RS04145 at 920.802 kb on - strand, within DDA3937_RS04145 at 920.802 kb on - strand, within DDA3937_RS04145 at 920.802 kb on - strand, within DDA3937_RS04145 at 920.862 kb on - strand, within DDA3937_RS04145 at 920.938 kb on - strand at 920.938 kb on - strand at 920.989 kb on - strand at 920.989 kb on - strand at 920.989 kb on - strand at 921.003 kb on - strand at 921.003 kb on - strand at 921.017 kb on - strand at 921.135 kb on - strand, within DDA3937_RS23480 at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.257 kb on + strand, within DDA3937_RS04150 at 921.258 kb on - strand, within DDA3937_RS04150 at 921.316 kb on + strand, within DDA3937_RS04150 at 921.316 kb on + strand, within DDA3937_RS04150 at 921.357 kb on - strand, within DDA3937_RS04150 at 921.357 kb on - strand, within DDA3937_RS04150 at 921.359 kb on + strand at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.363 kb on + strand, within DDA3937_RS04150 at 921.363 kb on + strand at 921.380 kb on + strand, within DDA3937_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 920,069 - -0.2 920,131 - +2.3 920,134 - -0.4 920,157 + -2.0 920,173 - -0.4 920,186 + +0.7 920,227 + DDA3937_RS04140 0.24 -3.0 920,289 - DDA3937_RS04140 0.52 -1.8 920,289 - DDA3937_RS04140 0.52 -0.6 920,437 - -3.1 920,710 - DDA3937_RS04145 0.55 -1.6 920,710 - DDA3937_RS04145 0.55 +0.2 920,744 - DDA3937_RS04145 0.62 +0.6 920,772 - DDA3937_RS04145 0.68 -1.5 920,798 - DDA3937_RS04145 0.73 -2.1 920,798 - DDA3937_RS04145 0.73 +0.4 920,798 - DDA3937_RS04145 0.73 -0.7 920,802 - DDA3937_RS04145 0.74 -0.6 920,802 - DDA3937_RS04145 0.74 -1.0 920,802 - DDA3937_RS04145 0.74 -1.1 920,862 - DDA3937_RS04145 0.85 -0.8 920,938 - -0.1 920,938 - -0.2 920,989 - +0.4 920,989 - +1.4 920,989 - +1.9 921,003 - -0.3 921,003 - -2.1 921,017 - +0.8 921,135 - DDA3937_RS23480 0.65 -0.2 921,200 + -1.0 921,200 + +1.2 921,200 + +1.9 921,200 + -0.2 921,200 + +0.6 921,200 + +0.6 921,201 - -0.6 921,201 - +0.8 921,201 - +0.4 921,201 - +2.1 921,257 + DDA3937_RS04150 0.17 -2.0 921,258 - DDA3937_RS04150 0.17 -0.5 921,316 + DDA3937_RS04150 0.35 -1.8 921,316 + DDA3937_RS04150 0.35 +0.0 921,357 - DDA3937_RS04150 0.47 -0.1 921,357 - DDA3937_RS04150 0.47 -0.3 921,359 + +3.9 921,359 + DDA3937_RS04150 0.48 -1.0 921,359 + DDA3937_RS04150 0.48 +0.1 921,359 + DDA3937_RS04150 0.48 -2.4 921,359 + DDA3937_RS04150 0.48 -0.8 921,359 + DDA3937_RS04150 0.48 -2.5 921,360 - DDA3937_RS04150 0.48 -0.6 921,360 - DDA3937_RS04150 0.48 +2.6 921,360 - DDA3937_RS04150 0.48 -0.0 921,360 - DDA3937_RS04150 0.48 +0.1 921,360 - DDA3937_RS04150 0.48 -0.8 921,360 - DDA3937_RS04150 0.48 -0.5 921,360 - DDA3937_RS04150 0.48 +0.8 921,363 + DDA3937_RS04150 0.49 -3.7 921,363 + -0.6 921,380 + DDA3937_RS04150 0.54 -1.8
Or see this region's nucleotide sequence