Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03345 and DDA3937_RS03350 are separated by 125 nucleotides DDA3937_RS03350 and DDA3937_RS03355 are separated by 85 nucleotides DDA3937_RS03355 and DDA3937_RS03365 are separated by 154 nucleotides
DDA3937_RS03345: DDA3937_RS03345 - helix-turn-helix transcriptional regulator, at 732,057 to 732,812
_RS03345
DDA3937_RS03350: DDA3937_RS03350 - LysE family transporter, at 732,938 to 733,609
_RS03350
DDA3937_RS03355: DDA3937_RS03355 - tRNA-Gly, at 733,695 to 733,768
_RS03355
DDA3937_RS03365: DDA3937_RS03365 - IS3 family transposase, at 733,923 to 735,022
_RS03365
Position (kb) 733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.702 kb on - strand, within DDA3937_RS03345 at 732.770 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.817 kb on - strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.874 kb on - strand at 732.874 kb on - strand at 732.874 kb on - strand at 732.890 kb on + strand at 732.923 kb on + strand at 732.924 kb on - strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.942 kb on + strand at 732.942 kb on + strand at 733.006 kb on + strand, within DDA3937_RS03350 at 733.016 kb on - strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.134 kb on - strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.144 kb on - strand, within DDA3937_RS03350 at 733.345 kb on - strand, within DDA3937_RS03350 at 733.458 kb on + strand, within DDA3937_RS03350 at 733.474 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.580 kb on + strand at 733.621 kb on - strand at 733.673 kb on + strand at 733.674 kb on - strand at 733.675 kb on + strand at 733.675 kb on + strand at 733.676 kb on - strand at 733.702 kb on + strand at 733.713 kb on + strand, within DDA3937_RS03355 at 733.714 kb on - strand at 733.714 kb on - strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.737 kb on - strand, within DDA3937_RS03355 at 733.798 kb on - strand at 733.828 kb on + strand at 733.828 kb on + strand at 733.829 kb on - strand at 733.829 kb on - strand at 733.829 kb on - strand at 733.832 kb on + strand at 733.832 kb on + strand at 733.832 kb on + strand at 733.833 kb on - strand at 733.833 kb on - strand at 733.833 kb on - strand at 733.873 kb on + strand at 733.884 kb on - strand at 734.037 kb on + strand, within DDA3937_RS03365 at 734.240 kb on - strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.343 kb on + strand, within DDA3937_RS03365 at 734.363 kb on + strand, within DDA3937_RS03365 at 734.392 kb on - strand, within DDA3937_RS03365 at 734.438 kb on + strand, within DDA3937_RS03365 at 734.439 kb on - strand, within DDA3937_RS03365 at 734.601 kb on + strand, within DDA3937_RS03365 at 734.602 kb on - strand, within DDA3937_RS03365 at 734.609 kb on - strand, within DDA3937_RS03365 at 734.676 kb on + strand, within DDA3937_RS03365 at 734.677 kb on - strand at 734.677 kb on - strand, within DDA3937_RS03365 at 734.719 kb on + strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.746 kb on + strand, within DDA3937_RS03365
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 732,701 + DDA3937_RS03345 0.85 +0.8 732,701 + DDA3937_RS03345 0.85 -0.0 732,701 + DDA3937_RS03345 0.85 -1.0 732,702 - DDA3937_RS03345 0.85 -1.1 732,770 + -1.7 732,816 + -0.8 732,816 + -0.3 732,816 + -2.5 732,816 + -2.6 732,816 + +0.3 732,817 - -2.3 732,853 + +0.3 732,853 + +0.6 732,853 + -0.1 732,853 + +0.7 732,853 + -0.4 732,853 + +0.1 732,854 - +0.7 732,854 - -0.9 732,854 - -0.6 732,854 - +0.2 732,873 + -0.0 732,873 + -0.2 732,873 + -0.0 732,873 + -0.7 732,874 - -0.1 732,874 - +0.3 732,874 - +2.1 732,890 + -0.4 732,923 + -0.3 732,924 - -0.9 732,937 + -0.8 732,937 + +0.2 732,937 + -0.3 732,937 + +1.3 732,937 + -1.1 732,937 + -1.2 732,937 + -2.3 732,937 + -0.7 732,937 + -0.9 732,937 + -3.3 732,937 + +0.5 732,937 + +0.7 732,938 - -2.3 732,938 - +2.4 732,938 - +0.9 732,938 - -0.0 732,938 - +1.4 732,938 - -0.3 732,938 - -0.5 732,938 - -3.2 732,938 - -1.2 732,942 + -1.4 732,942 + +0.5 733,006 + DDA3937_RS03350 0.10 -0.7 733,016 - DDA3937_RS03350 0.12 -1.5 733,133 + DDA3937_RS03350 0.29 -1.1 733,133 + DDA3937_RS03350 0.29 +0.0 733,133 + DDA3937_RS03350 0.29 -1.0 733,133 + DDA3937_RS03350 0.29 +0.0 733,133 + DDA3937_RS03350 0.29 -0.5 733,133 + DDA3937_RS03350 0.29 -0.4 733,133 + DDA3937_RS03350 0.29 +0.0 733,133 + DDA3937_RS03350 0.29 -1.2 733,133 + DDA3937_RS03350 0.29 -0.9 733,133 + DDA3937_RS03350 0.29 -0.3 733,133 + DDA3937_RS03350 0.29 -0.3 733,133 + DDA3937_RS03350 0.29 +1.0 733,133 + DDA3937_RS03350 0.29 +1.8 733,134 - DDA3937_RS03350 0.29 +0.7 733,135 + DDA3937_RS03350 0.29 -0.1 733,135 + DDA3937_RS03350 0.29 -0.9 733,135 + DDA3937_RS03350 0.29 +0.1 733,136 - DDA3937_RS03350 0.29 -1.4 733,136 - DDA3937_RS03350 0.29 -0.1 733,144 - DDA3937_RS03350 0.31 +0.1 733,345 - DDA3937_RS03350 0.61 -0.7 733,458 + DDA3937_RS03350 0.77 -2.2 733,474 - DDA3937_RS03350 0.80 +0.7 733,518 - DDA3937_RS03350 0.86 -1.7 733,518 - DDA3937_RS03350 0.86 -0.1 733,580 + -1.4 733,621 - +0.2 733,673 + -1.5 733,674 - +0.3 733,675 + -0.5 733,675 + -1.1 733,676 - +0.2 733,702 + -1.6 733,713 + DDA3937_RS03355 0.24 -1.1 733,714 - -0.9 733,714 - DDA3937_RS03355 0.26 -1.5 733,736 + DDA3937_RS03355 0.55 -1.5 733,736 + DDA3937_RS03355 0.55 +0.2 733,737 - DDA3937_RS03355 0.57 -0.4 733,798 - -0.1 733,828 + -1.3 733,828 + -2.5 733,829 - +0.7 733,829 - +0.4 733,829 - -3.3 733,832 + +0.2 733,832 + -0.1 733,832 + +0.1 733,833 - +0.9 733,833 - +1.0 733,833 - -1.7 733,873 + -2.0 733,884 - -0.2 734,037 + DDA3937_RS03365 0.10 +0.3 734,240 - DDA3937_RS03365 0.29 -1.2 734,288 + DDA3937_RS03365 0.33 +0.1 734,288 + DDA3937_RS03365 0.33 +0.7 734,289 - DDA3937_RS03365 0.33 +1.6 734,289 - DDA3937_RS03365 0.33 -0.1 734,343 + DDA3937_RS03365 0.38 -1.5 734,363 + DDA3937_RS03365 0.40 +1.7 734,392 - DDA3937_RS03365 0.43 +0.4 734,438 + DDA3937_RS03365 0.47 +0.9 734,439 - DDA3937_RS03365 0.47 -1.0 734,601 + DDA3937_RS03365 0.62 -1.5 734,602 - DDA3937_RS03365 0.62 -1.9 734,609 - DDA3937_RS03365 0.62 -0.7 734,676 + DDA3937_RS03365 0.68 +0.6 734,677 - -0.5 734,677 - DDA3937_RS03365 0.69 -0.1 734,719 + DDA3937_RS03365 0.72 -1.5 734,720 - DDA3937_RS03365 0.72 +1.9 734,720 - DDA3937_RS03365 0.72 -2.1 734,746 + DDA3937_RS03365 0.75 +0.9
Or see this region's nucleotide sequence