Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02845 and DDA3937_RS02850 are separated by 450 nucleotides DDA3937_RS02850 and DDA3937_RS02855 are separated by 93 nucleotides DDA3937_RS02855 and DDA3937_RS02860 are separated by 308 nucleotides
DDA3937_RS02845: DDA3937_RS02845 - TerC family protein, at 627,260 to 628,213
_RS02845
DDA3937_RS02850: DDA3937_RS02850 - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 628,664 to 629,836
_RS02850
DDA3937_RS02855: DDA3937_RS02855 - hypothetical protein, at 629,930 to 630,226
_RS02855
DDA3937_RS02860: DDA3937_RS02860 - pectate lyase, at 630,535 to 631,482
_RS02860
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.780 kb on + strand, within DDA3937_RS02845 at 627.781 kb on - strand, within DDA3937_RS02845 at 627.781 kb on - strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.836 kb on - strand, within DDA3937_RS02845 at 627.836 kb on - strand, within DDA3937_RS02845 at 627.842 kb on + strand, within DDA3937_RS02845 at 627.843 kb on - strand, within DDA3937_RS02845 at 627.864 kb on + strand, within DDA3937_RS02845 at 627.864 kb on + strand, within DDA3937_RS02845 at 627.865 kb on - strand, within DDA3937_RS02845 at 627.906 kb on + strand, within DDA3937_RS02845 at 627.906 kb on + strand, within DDA3937_RS02845 at 628.029 kb on + strand, within DDA3937_RS02845 at 628.029 kb on + strand, within DDA3937_RS02845 at 628.029 kb on + strand, within DDA3937_RS02845 at 628.030 kb on - strand, within DDA3937_RS02845 at 628.030 kb on - strand, within DDA3937_RS02845 at 628.055 kb on + strand, within DDA3937_RS02845 at 628.134 kb on + strand at 628.156 kb on + strand at 628.156 kb on + strand at 628.156 kb on + strand at 628.156 kb on + strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.209 kb on - strand at 628.209 kb on - strand at 628.213 kb on + strand at 628.213 kb on + strand at 628.214 kb on - strand at 628.214 kb on - strand at 628.214 kb on - strand at 628.219 kb on + strand at 628.220 kb on - strand at 628.220 kb on - strand at 628.309 kb on + strand at 628.310 kb on - strand at 628.312 kb on + strand at 628.313 kb on - strand at 628.313 kb on - strand at 628.323 kb on + strand at 628.323 kb on + strand at 628.324 kb on - strand at 628.352 kb on + strand at 628.352 kb on + strand at 628.352 kb on + strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.359 kb on + strand at 628.359 kb on + strand at 628.359 kb on + strand at 628.360 kb on - strand at 628.368 kb on + strand at 628.368 kb on + strand at 628.369 kb on - strand at 628.369 kb on - strand at 628.377 kb on + strand at 628.377 kb on + strand at 628.378 kb on - strand at 628.378 kb on - strand at 628.378 kb on - strand at 628.411 kb on + strand at 628.411 kb on + strand at 628.411 kb on + strand at 628.412 kb on - strand at 628.412 kb on - strand at 628.412 kb on - strand at 628.436 kb on + strand at 628.460 kb on + strand at 628.460 kb on + strand at 628.461 kb on - strand at 628.461 kb on - strand at 628.461 kb on - strand at 628.465 kb on + strand at 628.475 kb on - strand at 628.581 kb on - strand at 628.607 kb on - strand at 628.607 kb on - strand at 628.648 kb on + strand at 628.649 kb on - strand at 628.710 kb on - strand at 628.763 kb on + strand at 628.763 kb on + strand at 628.763 kb on + strand at 628.763 kb on + strand at 628.764 kb on - strand at 628.764 kb on - strand at 628.851 kb on + strand, within DDA3937_RS02850 at 628.851 kb on + strand, within DDA3937_RS02850 at 628.887 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.155 kb on + strand, within DDA3937_RS02850 at 629.297 kb on + strand, within DDA3937_RS02850 at 629.297 kb on + strand, within DDA3937_RS02850 at 629.297 kb on + strand, within DDA3937_RS02850 at 629.298 kb on - strand, within DDA3937_RS02850 at 629.298 kb on - strand, within DDA3937_RS02850 at 629.312 kb on + strand, within DDA3937_RS02850 at 629.312 kb on + strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.462 kb on + strand, within DDA3937_RS02850 at 629.462 kb on + strand, within DDA3937_RS02850 at 629.463 kb on - strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.489 kb on - strand, within DDA3937_RS02850 at 629.489 kb on - strand, within DDA3937_RS02850 at 629.738 kb on + strand at 629.817 kb on + strand at 629.881 kb on + strand at 629.881 kb on + strand at 629.881 kb on + strand at 629.882 kb on - strand at 629.882 kb on - strand at 629.882 kb on - strand at 629.882 kb on - strand at 629.909 kb on + strand at 629.909 kb on + strand at 629.910 kb on - strand at 629.929 kb on + strand at 629.929 kb on + strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.958 kb on + strand at 630.024 kb on - strand, within DDA3937_RS02855 at 630.140 kb on - strand, within DDA3937_RS02855 at 630.210 kb on - strand at 630.247 kb on - strand at 630.264 kb on - strand at 630.432 kb on - strand at 630.454 kb on - strand at 630.515 kb on - strand at 630.531 kb on + strand at 630.532 kb on - strand at 630.542 kb on - strand at 630.624 kb on + strand at 630.624 kb on + strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.697 kb on - strand, within DDA3937_RS02860 at 630.777 kb on + strand, within DDA3937_RS02860 at 630.778 kb on - strand, within DDA3937_RS02860
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 627,780 + DDA3937_RS02845 0.55 +0.2 627,781 - DDA3937_RS02845 0.55 -3.2 627,781 - DDA3937_RS02845 0.55 -1.1 627,832 + DDA3937_RS02845 0.60 -1.0 627,832 + DDA3937_RS02845 0.60 -0.8 627,832 + DDA3937_RS02845 0.60 -1.1 627,832 + DDA3937_RS02845 0.60 -0.0 627,833 - DDA3937_RS02845 0.60 +0.9 627,833 - DDA3937_RS02845 0.60 +0.2 627,833 - DDA3937_RS02845 0.60 -1.7 627,833 - DDA3937_RS02845 0.60 -0.0 627,833 - DDA3937_RS02845 0.60 -1.3 627,833 - DDA3937_RS02845 0.60 +0.1 627,835 + DDA3937_RS02845 0.60 -1.2 627,835 + DDA3937_RS02845 0.60 +0.2 627,835 + DDA3937_RS02845 0.60 +1.1 627,835 + DDA3937_RS02845 0.60 +0.3 627,836 - DDA3937_RS02845 0.60 -2.0 627,836 - DDA3937_RS02845 0.60 +0.9 627,842 + DDA3937_RS02845 0.61 +0.9 627,843 - DDA3937_RS02845 0.61 -2.2 627,864 + DDA3937_RS02845 0.63 -0.7 627,864 + DDA3937_RS02845 0.63 -0.4 627,865 - DDA3937_RS02845 0.63 +0.1 627,906 + DDA3937_RS02845 0.68 -0.3 627,906 + DDA3937_RS02845 0.68 -0.4 628,029 + DDA3937_RS02845 0.81 -1.4 628,029 + DDA3937_RS02845 0.81 -0.2 628,029 + DDA3937_RS02845 0.81 -0.4 628,030 - DDA3937_RS02845 0.81 -2.3 628,030 - DDA3937_RS02845 0.81 +0.0 628,055 + DDA3937_RS02845 0.83 -0.8 628,134 + -1.8 628,156 + -1.3 628,156 + +0.0 628,156 + +0.1 628,156 + +0.5 628,157 - +0.6 628,157 - -0.2 628,157 - -1.1 628,157 - -1.1 628,157 - +1.8 628,157 - -2.0 628,157 - +0.6 628,157 - +1.9 628,157 - +0.2 628,202 + -0.9 628,202 + -2.6 628,202 + -0.0 628,202 + +0.3 628,202 + -1.8 628,202 + -1.3 628,202 + +2.1 628,202 + -0.8 628,202 + +1.2 628,202 + -1.5 628,202 + +0.0 628,202 + -0.3 628,202 + +0.0 628,203 - -0.2 628,203 - +2.4 628,203 - -0.6 628,203 - +0.1 628,203 - +0.9 628,203 - -1.1 628,203 - -1.2 628,203 - +0.5 628,204 + +0.9 628,204 + -0.9 628,204 + +0.9 628,204 + -0.8 628,204 + +0.2 628,204 + +1.5 628,204 + -0.1 628,204 + +0.4 628,204 + +0.4 628,205 - +0.4 628,205 - -1.5 628,205 - +0.7 628,205 - +0.4 628,205 - -2.4 628,205 - -0.9 628,205 - +2.7 628,205 - -0.6 628,208 + +0.2 628,208 + +0.4 628,208 + +0.3 628,208 + +0.0 628,208 + -0.3 628,208 + -0.6 628,209 - -1.5 628,209 - -1.1 628,213 + -1.1 628,213 + -1.0 628,214 - +2.2 628,214 - +1.4 628,214 - -0.1 628,219 + -0.2 628,220 - -0.6 628,220 - +0.6 628,309 + +0.3 628,310 - -0.9 628,312 + +0.5 628,313 - +0.5 628,313 - -2.5 628,323 + +0.1 628,323 + -0.6 628,324 - -0.8 628,352 + -0.4 628,352 + -1.0 628,352 + -0.8 628,353 - +1.2 628,353 - -0.7 628,353 - -1.8 628,353 - -0.1 628,353 - +0.5 628,359 + +2.0 628,359 + -1.3 628,359 + -0.2 628,360 - -0.7 628,368 + -0.7 628,368 + -0.6 628,369 - -0.1 628,369 - +1.9 628,377 + -1.5 628,377 + +0.4 628,378 - +1.1 628,378 - -0.8 628,378 - -1.1 628,411 + -0.5 628,411 + -0.7 628,411 + -0.3 628,412 - -1.9 628,412 - -0.1 628,412 - -0.7 628,436 + -2.0 628,460 + +0.5 628,460 + +0.9 628,461 - -0.5 628,461 - -0.8 628,461 - +0.4 628,465 + -1.4 628,475 - -0.4 628,581 - +0.1 628,607 - -0.3 628,607 - -0.1 628,648 + +0.5 628,649 - -2.0 628,710 - -1.5 628,763 + +0.6 628,763 + -1.4 628,763 + -1.2 628,763 + +0.5 628,764 - -1.5 628,764 - -0.1 628,851 + DDA3937_RS02850 0.16 -0.3 628,851 + DDA3937_RS02850 0.16 -0.8 628,887 - DDA3937_RS02850 0.19 +0.3 629,111 - DDA3937_RS02850 0.38 -0.5 629,111 - DDA3937_RS02850 0.38 +0.9 629,111 - DDA3937_RS02850 0.38 -0.4 629,111 - DDA3937_RS02850 0.38 -1.9 629,155 + DDA3937_RS02850 0.42 -0.8 629,297 + DDA3937_RS02850 0.54 -0.7 629,297 + DDA3937_RS02850 0.54 +0.5 629,297 + DDA3937_RS02850 0.54 -0.9 629,298 - DDA3937_RS02850 0.54 -1.6 629,298 - DDA3937_RS02850 0.54 +0.2 629,312 + DDA3937_RS02850 0.55 +1.5 629,312 + DDA3937_RS02850 0.55 -1.7 629,313 - DDA3937_RS02850 0.55 -0.9 629,313 - DDA3937_RS02850 0.55 -1.9 629,313 - DDA3937_RS02850 0.55 -0.7 629,313 - DDA3937_RS02850 0.55 -0.6 629,462 + DDA3937_RS02850 0.68 -0.1 629,462 + DDA3937_RS02850 0.68 -0.6 629,463 - DDA3937_RS02850 0.68 +1.9 629,486 + DDA3937_RS02850 0.70 -0.7 629,486 + DDA3937_RS02850 0.70 -1.1 629,486 + DDA3937_RS02850 0.70 -1.2 629,486 + DDA3937_RS02850 0.70 -0.7 629,486 + DDA3937_RS02850 0.70 -0.2 629,486 + DDA3937_RS02850 0.70 +0.2 629,486 + DDA3937_RS02850 0.70 -0.1 629,486 + DDA3937_RS02850 0.70 -0.8 629,487 - DDA3937_RS02850 0.70 -0.5 629,487 - DDA3937_RS02850 0.70 +1.8 629,487 - DDA3937_RS02850 0.70 -0.6 629,487 - DDA3937_RS02850 0.70 -1.7 629,487 - DDA3937_RS02850 0.70 -0.7 629,487 - DDA3937_RS02850 0.70 -1.5 629,487 - DDA3937_RS02850 0.70 +0.9 629,487 - DDA3937_RS02850 0.70 -0.9 629,489 - DDA3937_RS02850 0.70 -0.5 629,489 - DDA3937_RS02850 0.70 +0.9 629,738 + +0.4 629,817 + -2.3 629,881 + -0.2 629,881 + -0.5 629,881 + -0.5 629,882 - +0.7 629,882 - -0.2 629,882 - -1.6 629,882 - +0.5 629,909 + -0.1 629,909 + +0.5 629,910 - +2.1 629,929 + -0.6 629,929 + -0.5 629,930 - +0.6 629,930 - -1.5 629,930 - +1.4 629,930 - -1.1 629,930 - -0.5 629,958 + +0.1 630,024 - DDA3937_RS02855 0.32 +0.3 630,140 - DDA3937_RS02855 0.71 -1.0 630,210 - -0.3 630,247 - -0.6 630,264 - -0.0 630,432 - -0.4 630,454 - +0.9 630,515 - -0.4 630,531 + -0.2 630,532 - +0.8 630,542 - -1.5 630,624 + -0.5 630,624 + -1.1 630,628 - -1.4 630,628 - -0.6 630,628 - -0.8 630,628 - +1.6 630,697 - DDA3937_RS02860 0.17 -0.1 630,777 + DDA3937_RS02860 0.26 +0.3 630,778 - DDA3937_RS02860 0.26 +2.0
Or see this region's nucleotide sequence