Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02795 and DDA3937_RS02800 are separated by 3 nucleotides DDA3937_RS02800 and DDA3937_RS02805 are separated by 198 nucleotides DDA3937_RS02805 and DDA3937_RS02810 are separated by 3 nucleotides DDA3937_RS02810 and DDA3937_RS02815 are separated by 743 nucleotides
DDA3937_RS02795: DDA3937_RS02795 - phage holin family protein, at 616,226 to 616,624
_RS02795
DDA3937_RS02800: DDA3937_RS02800 - DUF883 domain-containing protein, at 616,628 to 616,933
_RS02800
DDA3937_RS02805: DDA3937_RS02805 - EnvZ/OmpR regulon moderator MzrA, at 617,132 to 617,482
_RS02805
DDA3937_RS02810: DDA3937_RS02810 - DedA family protein, at 617,486 to 618,160
_RS02810
DDA3937_RS02815: DDA3937_RS02815 - transcriptional regulator ExuR, at 618,904 to 619,683
_RS02815
Position (kb) 617
618
619 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 616.661 kb on - strand, within DDA3937_RS02800 at 616.702 kb on + strand, within DDA3937_RS02800 at 616.707 kb on - strand, within DDA3937_RS02800 at 616.843 kb on + strand, within DDA3937_RS02800 at 616.844 kb on - strand, within DDA3937_RS02800 at 616.860 kb on - strand, within DDA3937_RS02800 at 616.860 kb on - strand, within DDA3937_RS02800 at 616.947 kb on + strand at 616.984 kb on - strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 617.024 kb on - strand at 617.087 kb on + strand at 617.088 kb on - strand at 617.088 kb on - strand at 617.165 kb on - strand at 617.165 kb on - strand at 617.187 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.208 kb on - strand, within DDA3937_RS02805 at 617.208 kb on - strand, within DDA3937_RS02805 at 617.275 kb on + strand, within DDA3937_RS02805 at 617.276 kb on - strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.323 kb on - strand, within DDA3937_RS02805 at 617.610 kb on + strand, within DDA3937_RS02810 at 617.610 kb on + strand, within DDA3937_RS02810 at 617.622 kb on - strand, within DDA3937_RS02810 at 617.902 kb on - strand, within DDA3937_RS02810 at 617.951 kb on - strand at 617.956 kb on + strand, within DDA3937_RS02810 at 618.071 kb on + strand, within DDA3937_RS02810 at 618.071 kb on + strand, within DDA3937_RS02810 at 618.071 kb on + strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.076 kb on - strand, within DDA3937_RS02810 at 618.076 kb on - strand, within DDA3937_RS02810 at 618.076 kb on - strand, within DDA3937_RS02810 at 618.135 kb on + strand at 618.135 kb on + strand at 618.135 kb on + strand at 618.136 kb on - strand at 618.149 kb on - strand at 618.149 kb on - strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.154 kb on + strand at 618.154 kb on + strand at 618.155 kb on - strand at 618.155 kb on - strand at 618.155 kb on - strand at 618.303 kb on - strand at 618.303 kb on - strand at 618.338 kb on + strand at 618.338 kb on + strand at 618.338 kb on + strand at 618.338 kb on + strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.341 kb on + strand at 618.341 kb on + strand at 618.341 kb on + strand at 618.356 kb on + strand at 618.356 kb on + strand at 618.357 kb on - strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.386 kb on + strand at 618.480 kb on + strand at 618.551 kb on + strand at 618.616 kb on - strand at 618.618 kb on - strand at 618.713 kb on + strand at 618.718 kb on + strand at 618.718 kb on + strand at 618.773 kb on + strand at 618.773 kb on + strand at 618.774 kb on - strand at 618.774 kb on - strand at 618.787 kb on + strand at 618.788 kb on - strand at 619.134 kb on + strand, within DDA3937_RS02815 at 619.134 kb on + strand, within DDA3937_RS02815 at 619.135 kb on - strand, within DDA3937_RS02815
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 616,661 - DDA3937_RS02800 0.11 -2.0 616,702 + DDA3937_RS02800 0.24 -0.1 616,707 - DDA3937_RS02800 0.26 +3.7 616,843 + DDA3937_RS02800 0.70 +0.1 616,844 - DDA3937_RS02800 0.71 -0.9 616,860 - DDA3937_RS02800 0.76 +0.0 616,860 - DDA3937_RS02800 0.76 +0.2 616,947 + -1.8 616,984 - +0.5 616,987 + +0.6 616,987 + +0.2 616,987 + +0.6 616,987 + -1.1 616,987 + -1.0 616,987 + -0.3 616,987 + +0.0 616,987 + +1.6 616,987 + +0.0 616,987 + +1.0 616,987 + -2.0 616,988 - +0.1 616,988 - -0.2 616,988 - +0.9 616,988 - -0.8 616,988 - -0.2 616,988 - +0.1 616,988 - +0.3 616,988 - -1.3 616,988 - +0.8 616,988 - -0.1 617,024 - -0.3 617,087 + +0.4 617,088 - +1.0 617,088 - -0.8 617,165 - +1.2 617,165 - -1.5 617,187 + DDA3937_RS02805 0.16 +0.2 617,207 + DDA3937_RS02805 0.21 -1.2 617,207 + DDA3937_RS02805 0.21 -1.8 617,207 + DDA3937_RS02805 0.21 -0.6 617,208 - DDA3937_RS02805 0.22 -1.6 617,208 - DDA3937_RS02805 0.22 +0.4 617,275 + DDA3937_RS02805 0.41 -0.4 617,276 - DDA3937_RS02805 0.41 +0.3 617,322 + DDA3937_RS02805 0.54 +0.9 617,322 + DDA3937_RS02805 0.54 +0.6 617,322 + DDA3937_RS02805 0.54 -0.3 617,322 + DDA3937_RS02805 0.54 -0.7 617,323 - DDA3937_RS02805 0.54 +1.2 617,610 + DDA3937_RS02810 0.18 +1.2 617,610 + DDA3937_RS02810 0.18 +0.3 617,622 - DDA3937_RS02810 0.20 -0.7 617,902 - DDA3937_RS02810 0.62 -0.1 617,951 - -0.8 617,956 + DDA3937_RS02810 0.70 -0.6 618,071 + DDA3937_RS02810 0.87 -2.0 618,071 + DDA3937_RS02810 0.87 -0.6 618,071 + DDA3937_RS02810 0.87 -1.3 618,072 - DDA3937_RS02810 0.87 -1.3 618,072 - DDA3937_RS02810 0.87 -0.5 618,072 - DDA3937_RS02810 0.87 -0.8 618,072 - DDA3937_RS02810 0.87 -0.2 618,072 - DDA3937_RS02810 0.87 +0.1 618,075 + DDA3937_RS02810 0.87 -1.1 618,075 + DDA3937_RS02810 0.87 -1.2 618,075 + DDA3937_RS02810 0.87 -1.8 618,075 + DDA3937_RS02810 0.87 +0.4 618,076 - DDA3937_RS02810 0.87 -0.5 618,076 - DDA3937_RS02810 0.87 -2.2 618,076 - DDA3937_RS02810 0.87 -1.7 618,135 + +0.4 618,135 + -0.5 618,135 + -0.7 618,136 - -2.6 618,149 - -0.1 618,149 - -1.5 618,152 + -1.1 618,152 + -1.3 618,152 + -1.3 618,152 + -2.0 618,152 + -0.8 618,152 + -1.1 618,152 + -1.2 618,152 + -0.8 618,152 + +1.0 618,152 + -1.4 618,153 - -1.4 618,153 - +4.0 618,153 - +0.7 618,153 - +0.2 618,153 - -0.7 618,153 - -0.8 618,153 - +1.9 618,153 - +0.3 618,153 - -2.0 618,153 - -0.1 618,153 - -1.3 618,153 - -0.5 618,153 - -0.7 618,154 + -2.1 618,154 + -2.1 618,155 - +0.5 618,155 - -0.3 618,155 - -1.2 618,303 - -0.1 618,303 - -0.8 618,338 + -2.5 618,338 + +1.1 618,338 + -2.0 618,338 + -1.7 618,339 - -0.1 618,339 - -1.8 618,339 - -2.5 618,339 - -0.1 618,339 - -0.4 618,339 - -0.1 618,339 - -1.0 618,339 - +0.8 618,339 - -1.1 618,339 - -0.8 618,339 - +2.1 618,341 + -0.2 618,341 + +1.0 618,341 + -0.5 618,356 + +1.6 618,356 + -2.2 618,357 - -1.5 618,361 + -1.5 618,361 + -1.6 618,361 + +0.5 618,361 + -1.5 618,361 + -3.8 618,386 + -0.3 618,480 + +0.5 618,551 + -2.4 618,616 - +0.1 618,618 - +0.3 618,713 + -2.0 618,718 + +1.1 618,718 + +0.6 618,773 + +2.5 618,773 + +0.1 618,774 - -0.5 618,774 - -0.1 618,787 + -0.2 618,788 - -0.2 619,134 + DDA3937_RS02815 0.29 -1.3 619,134 + DDA3937_RS02815 0.29 +0.4 619,135 - DDA3937_RS02815 0.30 -0.3
Or see this region's nucleotide sequence