Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02760 and DDA3937_RS02765 are separated by 343 nucleotides DDA3937_RS02765 and DDA3937_RS02770 are separated by 248 nucleotides
DDA3937_RS02760: DDA3937_RS02760 - repressor LexA, at 610,606 to 611,217
_RS02760
DDA3937_RS02765: DDA3937_RS02765 - zinc uptake transcriptional repressor Zur, at 611,561 to 612,070
_RS02765
DDA3937_RS02770: DDA3937_RS02770 - pirin family protein, at 612,319 to 613,023
_RS02770
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 610.564 kb on + strand at 610.564 kb on + strand at 610.565 kb on - strand at 610.565 kb on - strand at 610.565 kb on - strand at 610.566 kb on + strand at 610.566 kb on + strand at 610.566 kb on + strand at 610.567 kb on - strand at 610.568 kb on + strand at 610.568 kb on + strand at 610.568 kb on + strand at 610.568 kb on + strand at 610.568 kb on + strand at 610.568 kb on + strand at 611.199 kb on + strand at 611.215 kb on + strand at 611.230 kb on - strand at 611.307 kb on - strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.346 kb on + strand at 611.346 kb on + strand at 611.347 kb on - strand at 611.347 kb on - strand at 611.347 kb on - strand at 611.369 kb on + strand at 611.369 kb on + strand at 611.369 kb on + strand at 611.370 kb on - strand at 611.370 kb on - strand at 611.370 kb on - strand at 611.387 kb on + strand at 611.400 kb on + strand at 611.400 kb on + strand at 611.401 kb on - strand at 611.408 kb on + strand at 611.422 kb on + strand at 611.422 kb on + strand at 611.423 kb on - strand at 611.436 kb on - strand at 611.436 kb on - strand at 611.439 kb on + strand at 611.439 kb on + strand at 611.440 kb on - strand at 611.440 kb on - strand at 611.440 kb on - strand at 611.466 kb on + strand at 611.467 kb on - strand at 611.469 kb on + strand at 611.469 kb on + strand at 611.474 kb on - strand at 611.486 kb on + strand at 611.486 kb on + strand at 611.487 kb on - strand at 611.490 kb on + strand at 611.490 kb on + strand at 611.490 kb on + strand at 611.491 kb on - strand at 611.500 kb on + strand at 611.500 kb on + strand at 611.503 kb on + strand at 611.503 kb on + strand at 611.504 kb on - strand at 611.507 kb on + strand at 611.507 kb on + strand at 611.507 kb on + strand at 611.520 kb on + strand at 611.520 kb on + strand at 611.521 kb on - strand at 611.521 kb on - strand at 611.524 kb on + strand at 611.524 kb on + strand at 611.525 kb on - strand at 611.525 kb on - strand at 611.537 kb on + strand at 611.537 kb on + strand at 611.538 kb on - strand at 611.538 kb on - strand at 611.579 kb on + strand at 611.579 kb on + strand at 611.579 kb on + strand at 611.580 kb on - strand at 611.580 kb on - strand at 611.580 kb on - strand at 611.596 kb on + strand at 611.596 kb on + strand at 611.596 kb on + strand at 611.596 kb on + strand at 611.596 kb on + strand at 611.661 kb on - strand, within DDA3937_RS02765 at 611.661 kb on - strand, within DDA3937_RS02765 at 611.661 kb on - strand, within DDA3937_RS02765 at 611.661 kb on - strand, within DDA3937_RS02765 at 611.661 kb on - strand, within DDA3937_RS02765 at 611.668 kb on + strand, within DDA3937_RS02765 at 611.668 kb on + strand, within DDA3937_RS02765 at 611.669 kb on - strand, within DDA3937_RS02765 at 611.669 kb on - strand, within DDA3937_RS02765 at 611.669 kb on - strand, within DDA3937_RS02765 at 611.669 kb on - strand, within DDA3937_RS02765 at 611.669 kb on - strand, within DDA3937_RS02765 at 611.669 kb on - strand, within DDA3937_RS02765 at 611.669 kb on - strand, within DDA3937_RS02765 at 611.669 kb on - strand, within DDA3937_RS02765 at 611.782 kb on + strand, within DDA3937_RS02765 at 611.783 kb on - strand, within DDA3937_RS02765 at 611.817 kb on + strand at 611.817 kb on + strand, within DDA3937_RS02765 at 611.817 kb on + strand, within DDA3937_RS02765 at 611.817 kb on + strand, within DDA3937_RS02765 at 611.817 kb on + strand, within DDA3937_RS02765 at 611.817 kb on + strand, within DDA3937_RS02765 at 611.818 kb on - strand, within DDA3937_RS02765 at 611.818 kb on - strand, within DDA3937_RS02765 at 611.818 kb on - strand, within DDA3937_RS02765 at 611.818 kb on - strand, within DDA3937_RS02765 at 611.818 kb on - strand, within DDA3937_RS02765 at 611.818 kb on - strand, within DDA3937_RS02765 at 611.818 kb on - strand, within DDA3937_RS02765 at 611.818 kb on - strand, within DDA3937_RS02765 at 611.818 kb on - strand, within DDA3937_RS02765 at 611.834 kb on + strand, within DDA3937_RS02765 at 611.834 kb on + strand, within DDA3937_RS02765 at 611.834 kb on + strand, within DDA3937_RS02765 at 611.834 kb on + strand, within DDA3937_RS02765 at 611.834 kb on + strand, within DDA3937_RS02765 at 611.834 kb on + strand, within DDA3937_RS02765 at 611.835 kb on - strand, within DDA3937_RS02765 at 611.839 kb on + strand, within DDA3937_RS02765 at 611.839 kb on + strand, within DDA3937_RS02765 at 611.840 kb on - strand, within DDA3937_RS02765 at 611.897 kb on - strand, within DDA3937_RS02765 at 611.937 kb on + strand, within DDA3937_RS02765 at 611.938 kb on - strand, within DDA3937_RS02765 at 611.938 kb on - strand, within DDA3937_RS02765 at 611.938 kb on - strand, within DDA3937_RS02765 at 611.978 kb on + strand, within DDA3937_RS02765 at 611.978 kb on + strand, within DDA3937_RS02765 at 611.978 kb on + strand, within DDA3937_RS02765 at 611.978 kb on + strand, within DDA3937_RS02765 at 611.979 kb on - strand, within DDA3937_RS02765 at 611.979 kb on - strand, within DDA3937_RS02765 at 612.113 kb on - strand at 612.113 kb on - strand at 612.113 kb on - strand at 612.205 kb on - strand at 612.285 kb on + strand at 612.340 kb on + strand at 612.340 kb on + strand at 612.341 kb on - strand at 612.372 kb on + strand at 612.419 kb on - strand, within DDA3937_RS02770 at 612.419 kb on - strand, within DDA3937_RS02770 at 612.460 kb on - strand, within DDA3937_RS02770 at 612.465 kb on - strand, within DDA3937_RS02770 at 612.465 kb on - strand, within DDA3937_RS02770 at 612.465 kb on - strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.479 kb on + strand, within DDA3937_RS02770 at 612.507 kb on + strand, within DDA3937_RS02770 at 612.507 kb on + strand, within DDA3937_RS02770 at 612.507 kb on + strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.605 kb on + strand, within DDA3937_RS02770 at 612.711 kb on + strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.723 kb on - strand, within DDA3937_RS02770 at 612.723 kb on - strand, within DDA3937_RS02770 at 612.848 kb on + strand, within DDA3937_RS02770 at 612.922 kb on + strand, within DDA3937_RS02770 at 612.923 kb on - strand, within DDA3937_RS02770 at 612.923 kb on - strand, within DDA3937_RS02770 at 612.923 kb on - strand, within DDA3937_RS02770 at 612.939 kb on - strand, within DDA3937_RS02770 at 612.959 kb on + strand at 612.959 kb on + strand at 612.960 kb on - strand at 612.960 kb on - strand at 612.981 kb on - strand at 613.014 kb on + strand at 613.015 kb on - strand at 613.015 kb on - strand at 613.026 kb on + strand at 613.026 kb on + strand at 613.044 kb on - strand at 613.050 kb on - strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 610,564 + -2.2 610,564 + -0.9 610,565 - +1.0 610,565 - -0.9 610,565 - -1.1 610,566 + +0.5 610,566 + -3.0 610,566 + -2.5 610,567 - -0.5 610,568 + -2.6 610,568 + +3.7 610,568 + +0.5 610,568 + -2.2 610,568 + -0.3 610,568 + -0.2 611,199 + -0.6 611,215 + -1.1 611,230 - -0.1 611,307 - -1.7 611,330 + +1.0 611,330 + -0.6 611,330 + -0.7 611,330 + -1.8 611,330 + +0.4 611,330 + +0.5 611,330 + +0.9 611,331 - +0.3 611,331 - -1.1 611,331 - +0.2 611,331 - +0.1 611,331 - +1.0 611,337 + +0.6 611,337 + +0.6 611,337 + -0.0 611,337 + -2.3 611,337 + -1.0 611,337 + +1.0 611,337 + -1.5 611,337 + +1.0 611,337 + -1.3 611,337 + +0.0 611,338 - +0.3 611,338 - +0.0 611,338 - +0.2 611,338 - -1.2 611,338 - -2.5 611,338 - +0.2 611,338 - -0.1 611,338 - -0.8 611,338 - -0.0 611,338 - -2.8 611,338 - -2.5 611,346 + -0.5 611,346 + +0.6 611,347 - +0.3 611,347 - -0.2 611,347 - +1.1 611,369 + +1.2 611,369 + -1.1 611,369 + -0.1 611,370 - +0.8 611,370 - +0.1 611,370 - +0.1 611,387 + -1.5 611,400 + -1.1 611,400 + -0.3 611,401 - -2.8 611,408 + -0.5 611,422 + +0.5 611,422 + -2.1 611,423 - -1.5 611,436 - -1.8 611,436 - -1.6 611,439 + -0.2 611,439 + +1.7 611,440 - -0.2 611,440 - -0.8 611,440 - -0.5 611,466 + -3.0 611,467 - +0.3 611,469 + -0.3 611,469 + -0.7 611,474 - -1.7 611,486 + -1.7 611,486 + -1.4 611,487 - -0.3 611,490 + +0.2 611,490 + -1.0 611,490 + -1.2 611,491 - +0.6 611,500 + -0.8 611,500 + -0.1 611,503 + -0.5 611,503 + -1.2 611,504 - +0.3 611,507 + -0.1 611,507 + +2.5 611,507 + -0.6 611,520 + +0.1 611,520 + -0.7 611,521 - +0.1 611,521 - -1.0 611,524 + +0.6 611,524 + -1.2 611,525 - -0.7 611,525 - -0.1 611,537 + +1.0 611,537 + -0.7 611,538 - -0.7 611,538 - -0.4 611,579 + +0.7 611,579 + -0.8 611,579 + -0.1 611,580 - -2.2 611,580 - +2.2 611,580 - -0.7 611,596 + -0.0 611,596 + -0.7 611,596 + -0.2 611,596 + -0.6 611,596 + -1.1 611,661 - DDA3937_RS02765 0.20 -1.0 611,661 - DDA3937_RS02765 0.20 -0.4 611,661 - DDA3937_RS02765 0.20 -3.0 611,661 - DDA3937_RS02765 0.20 -1.3 611,661 - DDA3937_RS02765 0.20 -2.4 611,668 + DDA3937_RS02765 0.21 -2.6 611,668 + DDA3937_RS02765 0.21 -2.6 611,669 - DDA3937_RS02765 0.21 -0.2 611,669 - DDA3937_RS02765 0.21 -0.2 611,669 - DDA3937_RS02765 0.21 -2.7 611,669 - DDA3937_RS02765 0.21 -2.4 611,669 - DDA3937_RS02765 0.21 +1.1 611,669 - DDA3937_RS02765 0.21 +0.9 611,669 - DDA3937_RS02765 0.21 -0.5 611,669 - DDA3937_RS02765 0.21 +1.7 611,782 + DDA3937_RS02765 0.43 -1.6 611,783 - DDA3937_RS02765 0.44 -1.0 611,817 + +0.5 611,817 + DDA3937_RS02765 0.50 +0.2 611,817 + DDA3937_RS02765 0.50 -1.3 611,817 + DDA3937_RS02765 0.50 -0.5 611,817 + DDA3937_RS02765 0.50 -0.7 611,817 + DDA3937_RS02765 0.50 -0.3 611,818 - DDA3937_RS02765 0.50 -0.2 611,818 - DDA3937_RS02765 0.50 -1.4 611,818 - DDA3937_RS02765 0.50 -2.4 611,818 - DDA3937_RS02765 0.50 -2.6 611,818 - DDA3937_RS02765 0.50 -1.5 611,818 - DDA3937_RS02765 0.50 -2.2 611,818 - DDA3937_RS02765 0.50 +0.1 611,818 - DDA3937_RS02765 0.50 +0.3 611,818 - DDA3937_RS02765 0.50 -1.2 611,834 + DDA3937_RS02765 0.54 -1.7 611,834 + DDA3937_RS02765 0.54 +0.4 611,834 + DDA3937_RS02765 0.54 -1.8 611,834 + DDA3937_RS02765 0.54 -0.8 611,834 + DDA3937_RS02765 0.54 -0.4 611,834 + DDA3937_RS02765 0.54 -1.7 611,835 - DDA3937_RS02765 0.54 -1.5 611,839 + DDA3937_RS02765 0.55 -1.1 611,839 + DDA3937_RS02765 0.55 -2.3 611,840 - DDA3937_RS02765 0.55 -2.6 611,897 - DDA3937_RS02765 0.66 -0.3 611,937 + DDA3937_RS02765 0.74 -2.1 611,938 - DDA3937_RS02765 0.74 -0.5 611,938 - DDA3937_RS02765 0.74 -1.4 611,938 - DDA3937_RS02765 0.74 -2.7 611,978 + DDA3937_RS02765 0.82 -1.7 611,978 + DDA3937_RS02765 0.82 -0.2 611,978 + DDA3937_RS02765 0.82 -1.3 611,978 + DDA3937_RS02765 0.82 -2.6 611,979 - DDA3937_RS02765 0.82 -1.5 611,979 - DDA3937_RS02765 0.82 -0.0 612,113 - +0.1 612,113 - -1.0 612,113 - -1.2 612,205 - +3.5 612,285 + -1.1 612,340 + +0.2 612,340 + -1.1 612,341 - +0.1 612,372 + -1.2 612,419 - DDA3937_RS02770 0.14 -0.2 612,419 - DDA3937_RS02770 0.14 -1.5 612,460 - DDA3937_RS02770 0.20 -0.4 612,465 - DDA3937_RS02770 0.21 +0.9 612,465 - DDA3937_RS02770 0.21 -0.5 612,465 - DDA3937_RS02770 0.21 -1.2 612,475 + DDA3937_RS02770 0.22 -0.8 612,475 + DDA3937_RS02770 0.22 -0.1 612,475 + DDA3937_RS02770 0.22 -0.5 612,475 + DDA3937_RS02770 0.22 +0.0 612,475 + DDA3937_RS02770 0.22 +1.0 612,475 + DDA3937_RS02770 0.22 +0.4 612,476 - DDA3937_RS02770 0.22 -1.0 612,476 - DDA3937_RS02770 0.22 -1.3 612,476 - DDA3937_RS02770 0.22 +0.2 612,476 - DDA3937_RS02770 0.22 -0.5 612,476 - DDA3937_RS02770 0.22 -0.7 612,476 - DDA3937_RS02770 0.22 +0.2 612,479 + DDA3937_RS02770 0.23 -0.4 612,507 + DDA3937_RS02770 0.27 -0.2 612,507 + DDA3937_RS02770 0.27 -0.4 612,507 + DDA3937_RS02770 0.27 -0.2 612,508 - DDA3937_RS02770 0.27 -2.5 612,508 - DDA3937_RS02770 0.27 -0.3 612,508 - DDA3937_RS02770 0.27 -0.6 612,508 - DDA3937_RS02770 0.27 -0.8 612,508 - DDA3937_RS02770 0.27 +0.2 612,508 - DDA3937_RS02770 0.27 +0.1 612,508 - DDA3937_RS02770 0.27 -0.0 612,508 - DDA3937_RS02770 0.27 +0.1 612,605 + DDA3937_RS02770 0.41 +0.0 612,711 + DDA3937_RS02770 0.56 -0.2 612,712 - DDA3937_RS02770 0.56 -2.0 612,712 - DDA3937_RS02770 0.56 +0.3 612,712 - DDA3937_RS02770 0.56 -1.0 612,712 - DDA3937_RS02770 0.56 +0.8 612,712 - DDA3937_RS02770 0.56 -1.1 612,723 - DDA3937_RS02770 0.57 -0.5 612,723 - DDA3937_RS02770 0.57 +0.7 612,848 + DDA3937_RS02770 0.75 -1.7 612,922 + DDA3937_RS02770 0.86 +1.3 612,923 - DDA3937_RS02770 0.86 -1.2 612,923 - DDA3937_RS02770 0.86 +0.8 612,923 - DDA3937_RS02770 0.86 +1.2 612,939 - DDA3937_RS02770 0.88 +0.2 612,959 + -1.0 612,959 + -0.5 612,960 - -0.1 612,960 - -0.4 612,981 - -0.2 613,014 + -0.4 613,015 - +0.9 613,015 - +1.1 613,026 + +0.5 613,026 + -0.6 613,044 - -0.6 613,050 - +0.9 613,060 + -0.3 613,060 + -0.6 613,060 + +0.5 613,060 + -1.7 613,060 + -1.7 613,061 - +3.5 613,061 - -1.5 613,061 - -0.8 613,061 - +0.0 613,061 - -0.8 613,061 - -1.7 613,061 - -1.3 613,061 - -0.6 613,061 - -0.8 613,061 - +0.6
Or see this region's nucleotide sequence