Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02590 and DDA3937_RS02595 overlap by 8 nucleotides DDA3937_RS02595 and DDA3937_RS02600 are separated by 9 nucleotides
DDA3937_RS02590: DDA3937_RS02590 - hypothetical protein, at 574,365 to 575,747
_RS02590
DDA3937_RS02595: DDA3937_RS02595 - glycosyltransferase, at 575,740 to 576,729
_RS02595
DDA3937_RS02600: DDA3937_RS02600 - glycosyltransferase family 4 protein, at 576,739 to 577,950
_RS02600
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 574.746 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.771 kb on - strand, within DDA3937_RS02590 at 574.878 kb on - strand, within DDA3937_RS02590 at 574.910 kb on + strand, within DDA3937_RS02590 at 574.911 kb on - strand, within DDA3937_RS02590 at 574.935 kb on - strand, within DDA3937_RS02590 at 575.070 kb on + strand, within DDA3937_RS02590 at 575.073 kb on - strand, within DDA3937_RS02590 at 575.074 kb on + strand, within DDA3937_RS02590 at 575.075 kb on - strand, within DDA3937_RS02590 at 575.092 kb on + strand, within DDA3937_RS02590 at 575.256 kb on + strand, within DDA3937_RS02590 at 575.259 kb on - strand at 575.288 kb on + strand, within DDA3937_RS02590 at 575.296 kb on + strand, within DDA3937_RS02590 at 575.360 kb on - strand, within DDA3937_RS02590 at 575.412 kb on + strand, within DDA3937_RS02590 at 575.412 kb on + strand, within DDA3937_RS02590 at 575.412 kb on + strand, within DDA3937_RS02590 at 575.413 kb on - strand, within DDA3937_RS02590 at 575.440 kb on + strand, within DDA3937_RS02590 at 575.452 kb on + strand, within DDA3937_RS02590 at 575.499 kb on - strand at 575.502 kb on + strand, within DDA3937_RS02590 at 575.502 kb on + strand, within DDA3937_RS02590 at 575.551 kb on + strand at 575.676 kb on + strand at 575.676 kb on + strand at 575.677 kb on - strand at 575.677 kb on - strand at 575.725 kb on - strand at 575.740 kb on - strand at 575.748 kb on + strand at 575.772 kb on + strand at 575.773 kb on - strand at 575.817 kb on + strand at 575.818 kb on - strand at 575.818 kb on - strand at 575.829 kb on + strand at 575.870 kb on + strand, within DDA3937_RS02595 at 575.871 kb on - strand, within DDA3937_RS02595 at 575.871 kb on - strand, within DDA3937_RS02595 at 575.871 kb on - strand, within DDA3937_RS02595 at 575.974 kb on + strand, within DDA3937_RS02595 at 575.975 kb on - strand, within DDA3937_RS02595 at 575.981 kb on - strand, within DDA3937_RS02595 at 575.995 kb on + strand, within DDA3937_RS02595 at 575.996 kb on - strand, within DDA3937_RS02595 at 575.996 kb on - strand, within DDA3937_RS02595 at 576.040 kb on - strand, within DDA3937_RS02595 at 576.124 kb on + strand, within DDA3937_RS02595 at 576.125 kb on - strand, within DDA3937_RS02595 at 576.132 kb on + strand, within DDA3937_RS02595 at 576.132 kb on + strand, within DDA3937_RS02595 at 576.132 kb on + strand, within DDA3937_RS02595 at 576.163 kb on + strand, within DDA3937_RS02595 at 576.204 kb on - strand, within DDA3937_RS02595 at 576.204 kb on - strand, within DDA3937_RS02595 at 576.205 kb on + strand, within DDA3937_RS02595 at 576.231 kb on - strand, within DDA3937_RS02595 at 576.236 kb on - strand, within DDA3937_RS02595 at 576.306 kb on + strand, within DDA3937_RS02595 at 576.307 kb on - strand, within DDA3937_RS02595 at 576.332 kb on - strand, within DDA3937_RS02595 at 576.350 kb on - strand, within DDA3937_RS02595 at 576.365 kb on - strand, within DDA3937_RS02595 at 576.365 kb on - strand, within DDA3937_RS02595 at 576.367 kb on - strand, within DDA3937_RS02595 at 576.445 kb on + strand, within DDA3937_RS02595 at 576.445 kb on + strand, within DDA3937_RS02595 at 576.522 kb on - strand, within DDA3937_RS02595 at 576.584 kb on + strand, within DDA3937_RS02595 at 576.708 kb on + strand at 576.717 kb on + strand at 576.718 kb on - strand at 576.718 kb on - strand at 576.747 kb on - strand at 576.770 kb on - strand at 576.814 kb on - strand at 576.814 kb on - strand at 576.883 kb on + strand, within DDA3937_RS02600 at 576.945 kb on + strand at 576.946 kb on - strand, within DDA3937_RS02600 at 576.969 kb on + strand, within DDA3937_RS02600 at 576.970 kb on - strand, within DDA3937_RS02600 at 576.984 kb on + strand, within DDA3937_RS02600 at 576.984 kb on + strand, within DDA3937_RS02600 at 577.041 kb on + strand, within DDA3937_RS02600 at 577.045 kb on + strand, within DDA3937_RS02600 at 577.120 kb on + strand, within DDA3937_RS02600 at 577.121 kb on - strand, within DDA3937_RS02600 at 577.121 kb on - strand, within DDA3937_RS02600 at 577.121 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.142 kb on - strand, within DDA3937_RS02600 at 577.197 kb on + strand, within DDA3937_RS02600 at 577.197 kb on + strand, within DDA3937_RS02600 at 577.207 kb on - strand, within DDA3937_RS02600 at 577.211 kb on - strand, within DDA3937_RS02600 at 577.341 kb on - strand, within DDA3937_RS02600 at 577.474 kb on - strand, within DDA3937_RS02600 at 577.474 kb on - strand, within DDA3937_RS02600 at 577.543 kb on + strand, within DDA3937_RS02600 at 577.543 kb on + strand, within DDA3937_RS02600 at 577.588 kb on + strand, within DDA3937_RS02600 at 577.591 kb on - strand, within DDA3937_RS02600 at 577.591 kb on - strand, within DDA3937_RS02600 at 577.657 kb on + strand, within DDA3937_RS02600 at 577.657 kb on + strand, within DDA3937_RS02600 at 577.658 kb on - strand, within DDA3937_RS02600 at 577.661 kb on - strand, within DDA3937_RS02600 at 577.726 kb on - strand, within DDA3937_RS02600
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 574,746 + DDA3937_RS02590 0.28 -0.1 574,770 + DDA3937_RS02590 0.29 -0.2 574,770 + DDA3937_RS02590 0.29 +0.2 574,771 - DDA3937_RS02590 0.29 -0.3 574,878 - DDA3937_RS02590 0.37 -0.6 574,910 + DDA3937_RS02590 0.39 -1.7 574,911 - DDA3937_RS02590 0.39 -0.7 574,935 - DDA3937_RS02590 0.41 +0.5 575,070 + DDA3937_RS02590 0.51 -0.2 575,073 - DDA3937_RS02590 0.51 -1.4 575,074 + DDA3937_RS02590 0.51 -0.1 575,075 - DDA3937_RS02590 0.51 +0.4 575,092 + DDA3937_RS02590 0.53 -1.1 575,256 + DDA3937_RS02590 0.64 -0.7 575,259 - +0.9 575,288 + DDA3937_RS02590 0.67 +0.4 575,296 + DDA3937_RS02590 0.67 +1.5 575,360 - DDA3937_RS02590 0.72 -1.8 575,412 + DDA3937_RS02590 0.76 -1.9 575,412 + DDA3937_RS02590 0.76 -0.5 575,412 + DDA3937_RS02590 0.76 -1.1 575,413 - DDA3937_RS02590 0.76 -0.8 575,440 + DDA3937_RS02590 0.78 -1.2 575,452 + DDA3937_RS02590 0.79 -1.5 575,499 - +0.5 575,502 + DDA3937_RS02590 0.82 -0.2 575,502 + DDA3937_RS02590 0.82 +0.8 575,551 + -0.5 575,676 + +1.5 575,676 + +0.9 575,677 - +0.2 575,677 - -0.6 575,725 - +1.0 575,740 - -0.1 575,748 + -0.1 575,772 + -0.6 575,773 - +1.6 575,817 + -0.2 575,818 - -2.8 575,818 - +0.2 575,829 + -0.1 575,870 + DDA3937_RS02595 0.13 -0.6 575,871 - DDA3937_RS02595 0.13 -1.7 575,871 - DDA3937_RS02595 0.13 -2.5 575,871 - DDA3937_RS02595 0.13 -2.1 575,974 + DDA3937_RS02595 0.24 -1.0 575,975 - DDA3937_RS02595 0.24 -0.5 575,981 - DDA3937_RS02595 0.24 -0.3 575,995 + DDA3937_RS02595 0.26 -1.3 575,996 - DDA3937_RS02595 0.26 -0.8 575,996 - DDA3937_RS02595 0.26 -1.5 576,040 - DDA3937_RS02595 0.30 +1.0 576,124 + DDA3937_RS02595 0.39 -1.9 576,125 - DDA3937_RS02595 0.39 -0.1 576,132 + DDA3937_RS02595 0.40 -1.5 576,132 + DDA3937_RS02595 0.40 -2.6 576,132 + DDA3937_RS02595 0.40 -1.1 576,163 + DDA3937_RS02595 0.43 -0.9 576,204 - DDA3937_RS02595 0.47 +1.7 576,204 - DDA3937_RS02595 0.47 -1.4 576,205 + DDA3937_RS02595 0.47 -0.3 576,231 - DDA3937_RS02595 0.50 -0.5 576,236 - DDA3937_RS02595 0.50 -0.7 576,306 + DDA3937_RS02595 0.57 -0.8 576,307 - DDA3937_RS02595 0.57 +0.9 576,332 - DDA3937_RS02595 0.60 -1.0 576,350 - DDA3937_RS02595 0.62 +2.3 576,365 - DDA3937_RS02595 0.63 -1.5 576,365 - DDA3937_RS02595 0.63 -0.9 576,367 - DDA3937_RS02595 0.63 -1.3 576,445 + DDA3937_RS02595 0.71 +0.1 576,445 + DDA3937_RS02595 0.71 -0.7 576,522 - DDA3937_RS02595 0.79 -0.6 576,584 + DDA3937_RS02595 0.85 -1.1 576,708 + -0.1 576,717 + -1.1 576,718 - +0.2 576,718 - -1.4 576,747 - -1.9 576,770 - +1.3 576,814 - +4.2 576,814 - -0.1 576,883 + DDA3937_RS02600 0.12 -0.8 576,945 + -0.1 576,946 - DDA3937_RS02600 0.17 -1.1 576,969 + DDA3937_RS02600 0.19 -0.7 576,970 - DDA3937_RS02600 0.19 +0.3 576,984 + DDA3937_RS02600 0.20 -0.5 576,984 + DDA3937_RS02600 0.20 -1.7 577,041 + DDA3937_RS02600 0.25 +0.3 577,045 + DDA3937_RS02600 0.25 -1.6 577,120 + DDA3937_RS02600 0.31 +0.5 577,121 - DDA3937_RS02600 0.32 -1.9 577,121 - DDA3937_RS02600 0.32 -1.8 577,121 - DDA3937_RS02600 0.32 -0.3 577,129 - DDA3937_RS02600 0.32 -0.4 577,129 - DDA3937_RS02600 0.32 -0.7 577,129 - DDA3937_RS02600 0.32 +0.5 577,129 - DDA3937_RS02600 0.32 -0.7 577,142 - DDA3937_RS02600 0.33 +0.1 577,197 + DDA3937_RS02600 0.38 -1.7 577,197 + DDA3937_RS02600 0.38 -0.8 577,207 - DDA3937_RS02600 0.39 -0.9 577,211 - DDA3937_RS02600 0.39 -0.7 577,341 - DDA3937_RS02600 0.50 +3.6 577,474 - DDA3937_RS02600 0.61 -2.9 577,474 - DDA3937_RS02600 0.61 +0.0 577,543 + DDA3937_RS02600 0.66 -1.1 577,543 + DDA3937_RS02600 0.66 -1.1 577,588 + DDA3937_RS02600 0.70 -0.8 577,591 - DDA3937_RS02600 0.70 +0.6 577,591 - DDA3937_RS02600 0.70 -1.2 577,657 + DDA3937_RS02600 0.76 +0.5 577,657 + DDA3937_RS02600 0.76 -1.4 577,658 - DDA3937_RS02600 0.76 -0.7 577,661 - DDA3937_RS02600 0.76 -0.6 577,726 - DDA3937_RS02600 0.81 -1.7
Or see this region's nucleotide sequence