Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01730 and DDA3937_RS01735 are separated by 11 nucleotides DDA3937_RS01735 and DDA3937_RS01740 are separated by 192 nucleotides
DDA3937_RS01730: DDA3937_RS01730 - glutathionylspermidine synthase family protein, at 383,261 to 384,421
_RS01730
DDA3937_RS01735: DDA3937_RS01735 - DUF1190 family protein, at 384,433 to 385,194
_RS01735
DDA3937_RS01740: DDA3937_RS01740 - outer membrane channel protein TolC, at 385,387 to 386,799
_RS01740
Position (kb) 384
385
386 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 383.527 kb on - strand, within DDA3937_RS01730 at 383.563 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.802 kb on + strand, within DDA3937_RS01730 at 383.802 kb on + strand, within DDA3937_RS01730 at 383.803 kb on - strand, within DDA3937_RS01730 at 383.846 kb on + strand, within DDA3937_RS01730 at 383.847 kb on - strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.902 kb on + strand, within DDA3937_RS01730 at 383.903 kb on - strand, within DDA3937_RS01730 at 383.903 kb on - strand, within DDA3937_RS01730 at 383.970 kb on + strand, within DDA3937_RS01730 at 384.049 kb on - strand, within DDA3937_RS01730 at 384.064 kb on + strand, within DDA3937_RS01730 at 384.109 kb on - strand, within DDA3937_RS01730 at 384.129 kb on + strand, within DDA3937_RS01730 at 384.130 kb on - strand at 384.301 kb on + strand, within DDA3937_RS01730 at 384.301 kb on + strand, within DDA3937_RS01730 at 384.302 kb on - strand, within DDA3937_RS01730 at 384.309 kb on + strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.312 kb on + strand at 384.312 kb on + strand at 384.312 kb on + strand at 384.313 kb on - strand at 384.313 kb on - strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.343 kb on - strand at 384.343 kb on - strand at 384.343 kb on - strand at 384.367 kb on - strand at 384.367 kb on - strand at 384.367 kb on - strand at 384.435 kb on - strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.907 kb on - strand, within DDA3937_RS01735 at 384.953 kb on + strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 385.058 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.138 kb on - strand at 385.254 kb on - strand at 385.259 kb on + strand at 385.260 kb on - strand at 385.262 kb on + strand at 385.262 kb on + strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.279 kb on + strand at 385.301 kb on + strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.323 kb on + strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.395 kb on + strand at 385.491 kb on + strand at 385.605 kb on - strand, within DDA3937_RS01740 at 385.612 kb on - strand, within DDA3937_RS01740 at 385.612 kb on - strand, within DDA3937_RS01740 at 385.750 kb on - strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.911 kb on - strand, within DDA3937_RS01740 at 386.142 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 383,527 - DDA3937_RS01730 0.23 -0.6 383,563 - DDA3937_RS01730 0.26 -1.8 383,790 - DDA3937_RS01730 0.46 +0.2 383,790 - DDA3937_RS01730 0.46 +1.1 383,790 - DDA3937_RS01730 0.46 -0.1 383,802 + DDA3937_RS01730 0.47 -0.2 383,802 + DDA3937_RS01730 0.47 -1.3 383,803 - DDA3937_RS01730 0.47 -1.1 383,846 + DDA3937_RS01730 0.50 -1.1 383,847 - DDA3937_RS01730 0.50 +0.3 383,850 + DDA3937_RS01730 0.51 -2.3 383,850 + DDA3937_RS01730 0.51 -0.8 383,850 + DDA3937_RS01730 0.51 -2.6 383,851 - DDA3937_RS01730 0.51 +0.5 383,851 - DDA3937_RS01730 0.51 -0.3 383,851 - DDA3937_RS01730 0.51 +0.7 383,851 - DDA3937_RS01730 0.51 -1.9 383,851 - DDA3937_RS01730 0.51 -0.2 383,851 - DDA3937_RS01730 0.51 +0.6 383,851 - DDA3937_RS01730 0.51 +1.3 383,902 + DDA3937_RS01730 0.55 -0.2 383,903 - DDA3937_RS01730 0.55 +0.5 383,903 - DDA3937_RS01730 0.55 -0.1 383,970 + DDA3937_RS01730 0.61 -0.7 384,049 - DDA3937_RS01730 0.68 +0.2 384,064 + DDA3937_RS01730 0.69 -2.1 384,109 - DDA3937_RS01730 0.73 +0.2 384,129 + DDA3937_RS01730 0.75 -0.4 384,130 - +0.5 384,301 + DDA3937_RS01730 0.90 +0.8 384,301 + DDA3937_RS01730 0.90 -0.6 384,302 - DDA3937_RS01730 0.90 +0.8 384,309 + -0.9 384,310 - -1.4 384,310 - -1.0 384,310 - +0.3 384,310 - -0.8 384,312 + -2.2 384,312 + -2.5 384,312 + -0.8 384,313 - -0.9 384,313 - +0.2 384,342 + -1.2 384,342 + -0.8 384,342 + -0.1 384,342 + +0.1 384,342 + -1.9 384,342 + -0.5 384,342 + -1.4 384,342 + -1.3 384,343 - +0.8 384,343 - -0.5 384,343 - +0.3 384,367 - +0.0 384,367 - -1.6 384,367 - +0.1 384,435 - -0.3 384,507 + +0.0 384,507 + -1.5 384,507 + -1.3 384,508 - -0.1 384,508 - -0.1 384,508 - -0.8 384,731 + DDA3937_RS01735 0.39 -1.1 384,731 + DDA3937_RS01735 0.39 +0.6 384,731 + DDA3937_RS01735 0.39 -0.6 384,731 + DDA3937_RS01735 0.39 -1.1 384,731 + DDA3937_RS01735 0.39 +0.1 384,731 + DDA3937_RS01735 0.39 +0.3 384,731 + DDA3937_RS01735 0.39 -1.7 384,731 + DDA3937_RS01735 0.39 -1.0 384,731 + DDA3937_RS01735 0.39 -1.2 384,731 + DDA3937_RS01735 0.39 -1.5 384,731 + DDA3937_RS01735 0.39 -1.6 384,731 + DDA3937_RS01735 0.39 -2.5 384,731 + DDA3937_RS01735 0.39 +0.5 384,732 - DDA3937_RS01735 0.39 +1.3 384,732 - DDA3937_RS01735 0.39 -1.2 384,732 - DDA3937_RS01735 0.39 -2.6 384,732 - DDA3937_RS01735 0.39 -0.4 384,732 - DDA3937_RS01735 0.39 -1.4 384,732 - DDA3937_RS01735 0.39 +0.4 384,732 - DDA3937_RS01735 0.39 +0.5 384,732 - DDA3937_RS01735 0.39 -1.7 384,732 - DDA3937_RS01735 0.39 +2.2 384,906 + DDA3937_RS01735 0.62 +0.6 384,906 + DDA3937_RS01735 0.62 -1.4 384,907 - DDA3937_RS01735 0.62 -1.8 384,953 + DDA3937_RS01735 0.68 -0.3 384,994 - DDA3937_RS01735 0.74 -2.4 384,994 - DDA3937_RS01735 0.74 -1.8 384,995 + DDA3937_RS01735 0.74 -0.5 384,995 + DDA3937_RS01735 0.74 -0.2 384,995 + DDA3937_RS01735 0.74 -0.1 384,996 - DDA3937_RS01735 0.74 +1.3 384,996 - DDA3937_RS01735 0.74 -0.7 384,996 - DDA3937_RS01735 0.74 +0.9 384,996 - DDA3937_RS01735 0.74 -0.1 384,996 - DDA3937_RS01735 0.74 -1.8 384,996 - DDA3937_RS01735 0.74 -1.5 385,058 + DDA3937_RS01735 0.82 -0.5 385,101 + DDA3937_RS01735 0.88 -0.4 385,101 + DDA3937_RS01735 0.88 -0.4 385,138 - +0.5 385,254 - +0.6 385,259 + -0.8 385,260 - +1.0 385,262 + -0.1 385,262 + -1.5 385,263 - +0.5 385,263 - +0.4 385,263 - +1.9 385,279 + +0.2 385,301 + +0.2 385,302 - -1.4 385,302 - -0.8 385,302 - -0.1 385,323 + -1.1 385,324 - +0.5 385,324 - +0.9 385,324 - -1.9 385,395 + +0.6 385,491 + -3.9 385,605 - DDA3937_RS01740 0.15 -0.8 385,612 - DDA3937_RS01740 0.16 -1.6 385,612 - DDA3937_RS01740 0.16 -0.7 385,750 - DDA3937_RS01740 0.26 -1.8 385,910 + DDA3937_RS01740 0.37 -1.5 385,910 + DDA3937_RS01740 0.37 -2.2 385,910 + DDA3937_RS01740 0.37 -1.3 385,910 + DDA3937_RS01740 0.37 -2.1 385,910 + DDA3937_RS01740 0.37 -1.3 385,910 + DDA3937_RS01740 0.37 -0.8 385,910 + DDA3937_RS01740 0.37 -1.6 385,911 - DDA3937_RS01740 0.37 -2.2 386,142 + +0.5
Or see this region's nucleotide sequence