Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01495 and DDA3937_RS01500 are separated by 190 nucleotides DDA3937_RS01500 and DDA3937_RS01505 are separated by 66 nucleotides DDA3937_RS01505 and DDA3937_RS01510 are separated by 180 nucleotides DDA3937_RS01510 and DDA3937_RS01515 overlap by 4 nucleotides
DDA3937_RS01495: DDA3937_RS01495 - ribosome-associated protein, at 336,038 to 336,586
_RS01495
DDA3937_RS01500: DDA3937_RS01500 - metalloprotease PmbA, at 336,777 to 338,117
_RS01500
DDA3937_RS01505: DDA3937_RS01505 - nucleoside diphosphate kinase regulator, at 338,184 to 338,594
_RS01505
DDA3937_RS01510: DDA3937_RS01510 - PTS phosphocarrier protein NPr, at 338,775 to 339,047
_RS01510
DDA3937_RS01515: DDA3937_RS01515 - RNase adapter RapZ, at 339,044 to 339,898
_RS01515
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.036 kb on + strand at 336.036 kb on + strand at 336.066 kb on + strand at 336.067 kb on - strand at 336.067 kb on - strand at 336.091 kb on + strand at 336.091 kb on + strand at 336.092 kb on - strand at 336.092 kb on - strand at 336.127 kb on + strand, within DDA3937_RS01495 at 336.128 kb on - strand, within DDA3937_RS01495 at 336.128 kb on - strand, within DDA3937_RS01495 at 336.131 kb on + strand, within DDA3937_RS01495 at 336.131 kb on + strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.252 kb on - strand, within DDA3937_RS01495 at 336.252 kb on - strand, within DDA3937_RS01495 at 336.365 kb on - strand, within DDA3937_RS01495 at 336.515 kb on + strand, within DDA3937_RS01495 at 336.515 kb on + strand, within DDA3937_RS01495 at 336.515 kb on + strand, within DDA3937_RS01495 at 336.516 kb on - strand, within DDA3937_RS01495 at 336.516 kb on - strand, within DDA3937_RS01495 at 336.516 kb on - strand, within DDA3937_RS01495 at 336.600 kb on + strand at 336.601 kb on - strand at 336.616 kb on + strand at 336.617 kb on - strand at 336.669 kb on + strand at 336.670 kb on - strand at 336.670 kb on - strand at 336.670 kb on - strand at 336.670 kb on - strand at 336.676 kb on + strand at 336.677 kb on - strand at 336.677 kb on - strand at 336.686 kb on + strand at 336.686 kb on + strand at 336.687 kb on - strand at 336.697 kb on + strand at 336.697 kb on + strand at 336.698 kb on - strand at 336.698 kb on - strand at 336.698 kb on - strand at 336.698 kb on - strand at 336.709 kb on + strand at 336.709 kb on + strand at 336.709 kb on + strand at 336.709 kb on + strand at 336.710 kb on - strand at 336.765 kb on + strand at 336.766 kb on - strand at 336.784 kb on + strand at 336.784 kb on + strand at 336.785 kb on - strand at 336.809 kb on + strand at 336.809 kb on + strand at 336.809 kb on + strand at 336.809 kb on + strand at 336.810 kb on - strand at 336.810 kb on - strand at 336.810 kb on - strand at 336.810 kb on - strand at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.978 kb on + strand, within DDA3937_RS01500 at 336.978 kb on + strand, within DDA3937_RS01500 at 336.979 kb on - strand, within DDA3937_RS01500 at 336.979 kb on - strand, within DDA3937_RS01500 at 337.068 kb on + strand, within DDA3937_RS01500 at 337.253 kb on + strand, within DDA3937_RS01500 at 337.263 kb on + strand, within DDA3937_RS01500 at 337.263 kb on + strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.377 kb on + strand, within DDA3937_RS01500 at 337.378 kb on - strand, within DDA3937_RS01500 at 337.383 kb on + strand, within DDA3937_RS01500 at 337.475 kb on + strand, within DDA3937_RS01500 at 337.476 kb on - strand, within DDA3937_RS01500 at 337.572 kb on + strand, within DDA3937_RS01500 at 337.577 kb on + strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.770 kb on - strand, within DDA3937_RS01500 at 337.811 kb on + strand, within DDA3937_RS01500 at 337.812 kb on - strand, within DDA3937_RS01500 at 338.015 kb on + strand at 338.015 kb on + strand at 338.015 kb on + strand at 338.016 kb on - strand at 338.025 kb on - strand at 338.025 kb on - strand at 338.113 kb on + strand at 338.113 kb on + strand at 338.113 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.182 kb on + strand at 338.183 kb on - strand at 338.194 kb on + strand at 338.218 kb on + strand at 338.218 kb on + strand at 338.277 kb on - strand, within DDA3937_RS01505 at 338.277 kb on - strand, within DDA3937_RS01505 at 338.381 kb on + strand, within DDA3937_RS01505 at 338.382 kb on - strand, within DDA3937_RS01505 at 338.423 kb on + strand, within DDA3937_RS01505 at 338.424 kb on - strand, within DDA3937_RS01505 at 338.571 kb on - strand at 338.589 kb on - strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.595 kb on - strand at 338.595 kb on - strand at 338.617 kb on - strand at 338.617 kb on - strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.660 kb on + strand at 338.661 kb on - strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.672 kb on - strand at 338.691 kb on + strand at 338.699 kb on - strand at 338.707 kb on - strand at 338.776 kb on + strand at 338.777 kb on - strand at 338.777 kb on - strand at 338.802 kb on + strand at 338.803 kb on - strand, within DDA3937_RS01510 at 338.811 kb on - strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.941 kb on - strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 339.083 kb on + strand at 339.083 kb on + strand at 339.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 336,020 + -1.8 336,020 + +0.9 336,020 + -0.1 336,020 + -1.8 336,020 + -2.1 336,020 + -0.9 336,020 + -0.6 336,020 + -1.1 336,021 - -0.1 336,021 - -1.1 336,021 - -0.6 336,021 - -1.2 336,021 - +0.1 336,021 - -0.5 336,021 - -0.6 336,036 + -0.3 336,036 + -0.5 336,066 + -1.5 336,067 - -2.1 336,067 - -1.3 336,091 + -1.5 336,091 + -0.1 336,092 - -2.4 336,092 - -2.4 336,127 + DDA3937_RS01495 0.16 -1.7 336,128 - DDA3937_RS01495 0.16 -1.9 336,128 - DDA3937_RS01495 0.16 +0.1 336,131 + DDA3937_RS01495 0.17 -1.1 336,131 + DDA3937_RS01495 0.17 -1.0 336,132 - DDA3937_RS01495 0.17 +0.7 336,132 - DDA3937_RS01495 0.17 -1.9 336,132 - DDA3937_RS01495 0.17 +1.5 336,132 - DDA3937_RS01495 0.17 -2.0 336,132 - DDA3937_RS01495 0.17 -0.7 336,252 - DDA3937_RS01495 0.39 -0.2 336,252 - DDA3937_RS01495 0.39 +0.9 336,365 - DDA3937_RS01495 0.60 +0.9 336,515 + DDA3937_RS01495 0.87 -2.2 336,515 + DDA3937_RS01495 0.87 +0.5 336,515 + DDA3937_RS01495 0.87 -2.6 336,516 - DDA3937_RS01495 0.87 -0.6 336,516 - DDA3937_RS01495 0.87 -2.8 336,516 - DDA3937_RS01495 0.87 -0.8 336,600 + -2.3 336,601 - -1.2 336,616 + -2.2 336,617 - +0.6 336,669 + +0.3 336,670 - -0.3 336,670 - -0.5 336,670 - -1.5 336,670 - -0.7 336,676 + -0.1 336,677 - -4.0 336,677 - -2.2 336,686 + -1.2 336,686 + -0.4 336,687 - +0.5 336,697 + +1.5 336,697 + +0.1 336,698 - +0.4 336,698 - -0.1 336,698 - +0.2 336,698 - -0.8 336,709 + -1.3 336,709 + -1.5 336,709 + -1.3 336,709 + -2.3 336,710 - -0.5 336,765 + -0.2 336,766 - -1.3 336,784 + -1.9 336,784 + +0.7 336,785 - -1.5 336,809 + -0.5 336,809 + +2.8 336,809 + -1.6 336,809 + -1.1 336,810 - -1.7 336,810 - +0.2 336,810 - -0.3 336,810 - +1.3 336,976 - DDA3937_RS01500 0.15 -1.1 336,976 - DDA3937_RS01500 0.15 +0.5 336,976 - DDA3937_RS01500 0.15 -0.5 336,976 - DDA3937_RS01500 0.15 -2.3 336,976 - DDA3937_RS01500 0.15 -2.3 336,976 - DDA3937_RS01500 0.15 -1.2 336,978 + DDA3937_RS01500 0.15 -1.5 336,978 + DDA3937_RS01500 0.15 -0.4 336,979 - DDA3937_RS01500 0.15 -1.6 336,979 - DDA3937_RS01500 0.15 +1.5 337,068 + DDA3937_RS01500 0.22 -1.3 337,253 + DDA3937_RS01500 0.35 -1.4 337,263 + DDA3937_RS01500 0.36 -0.0 337,263 + DDA3937_RS01500 0.36 -1.2 337,309 - DDA3937_RS01500 0.40 +0.5 337,309 - DDA3937_RS01500 0.40 -0.6 337,309 - DDA3937_RS01500 0.40 +0.6 337,377 + DDA3937_RS01500 0.45 +0.5 337,378 - DDA3937_RS01500 0.45 +0.2 337,383 + DDA3937_RS01500 0.45 -1.4 337,475 + DDA3937_RS01500 0.52 -0.8 337,476 - DDA3937_RS01500 0.52 +1.9 337,572 + DDA3937_RS01500 0.59 -1.6 337,577 + DDA3937_RS01500 0.60 -1.3 337,578 - DDA3937_RS01500 0.60 -0.3 337,578 - DDA3937_RS01500 0.60 -1.6 337,578 - DDA3937_RS01500 0.60 -1.1 337,578 - DDA3937_RS01500 0.60 +0.5 337,758 + DDA3937_RS01500 0.73 -1.0 337,758 + DDA3937_RS01500 0.73 -0.5 337,758 + DDA3937_RS01500 0.73 -0.0 337,758 + DDA3937_RS01500 0.73 +0.2 337,758 + DDA3937_RS01500 0.73 -1.8 337,758 + DDA3937_RS01500 0.73 +2.5 337,759 - DDA3937_RS01500 0.73 +1.1 337,759 - DDA3937_RS01500 0.73 -2.4 337,759 - DDA3937_RS01500 0.73 -1.5 337,770 - DDA3937_RS01500 0.74 -1.3 337,811 + DDA3937_RS01500 0.77 -2.0 337,812 - DDA3937_RS01500 0.77 -1.3 338,015 + -0.8 338,015 + -1.8 338,015 + +0.1 338,016 - -1.3 338,025 - +0.4 338,025 - -1.5 338,113 + +0.8 338,113 + +0.0 338,113 + -0.1 338,115 + -1.3 338,115 + -2.3 338,115 + -0.7 338,115 + +0.5 338,115 + -2.5 338,116 - -0.4 338,116 - -2.6 338,116 - +0.5 338,116 - -0.7 338,182 + -2.6 338,183 - -0.9 338,194 + +1.0 338,218 + -0.8 338,218 + +2.3 338,277 - DDA3937_RS01505 0.23 -1.8 338,277 - DDA3937_RS01505 0.23 -1.1 338,381 + DDA3937_RS01505 0.48 -2.3 338,382 - DDA3937_RS01505 0.48 +0.0 338,423 + DDA3937_RS01505 0.58 +0.1 338,424 - DDA3937_RS01505 0.58 -0.8 338,571 - +2.2 338,589 - -0.8 338,594 + -0.4 338,594 + +1.5 338,594 + -0.3 338,595 - -0.3 338,595 - -0.4 338,617 - -1.0 338,617 - -0.7 338,655 + +0.0 338,655 + +1.2 338,655 + -0.4 338,655 + -0.6 338,656 - +1.1 338,656 - -1.3 338,656 - -0.4 338,660 + -0.4 338,661 - -1.1 338,671 + -1.1 338,671 + -0.6 338,671 + -1.1 338,672 - +0.1 338,691 + +0.2 338,699 - +0.2 338,707 - +1.4 338,776 + -0.2 338,777 - -1.7 338,777 - +2.5 338,802 + +0.9 338,803 - DDA3937_RS01510 0.10 +0.8 338,811 - DDA3937_RS01510 0.13 -1.6 338,940 + DDA3937_RS01510 0.60 +1.7 338,940 + DDA3937_RS01510 0.60 -0.5 338,941 - DDA3937_RS01510 0.61 -0.0 338,967 + DDA3937_RS01510 0.70 +1.6 338,967 + DDA3937_RS01510 0.70 -0.4 339,083 + -0.3 339,083 + +0.7 339,084 - +0.5
Or see this region's nucleotide sequence