Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01400 and DDA3937_RS01405 are separated by 35 nucleotides DDA3937_RS01405 and DDA3937_RS01410 are separated by 238 nucleotides DDA3937_RS01410 and DDA3937_RS01415 are separated by 66 nucleotides
DDA3937_RS01400: DDA3937_RS01400 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 313,157 to 313,582
_RS01400
DDA3937_RS01405: DDA3937_RS01405 - type II 3-dehydroquinate dehydratase, at 313,618 to 314,070
_RS01405
DDA3937_RS01410: DDA3937_RS01410 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 314,309 to 314,908
_RS01410
DDA3937_RS01415: DDA3937_RS01415 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 314,975 to 315,976
_RS01415
Position (kb) 314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.224 kb on + strand at 314.374 kb on - strand, within DDA3937_RS01410 at 314.374 kb on - strand, within DDA3937_RS01410 at 314.456 kb on - strand, within DDA3937_RS01410 at 314.456 kb on - strand, within DDA3937_RS01410 at 314.511 kb on - strand, within DDA3937_RS01410 at 314.625 kb on + strand, within DDA3937_RS01410 at 314.626 kb on - strand, within DDA3937_RS01410 at 314.626 kb on - strand, within DDA3937_RS01410 at 314.704 kb on + strand, within DDA3937_RS01410 at 314.770 kb on + strand, within DDA3937_RS01410 at 314.783 kb on - strand, within DDA3937_RS01410 at 314.887 kb on + strand at 314.887 kb on + strand at 314.887 kb on + strand at 314.887 kb on + strand at 314.887 kb on + strand at 314.887 kb on + strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.960 kb on + strand at 315.006 kb on + strand at 315.089 kb on + strand, within DDA3937_RS01415 at 315.147 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.230 kb on - strand, within DDA3937_RS01415 at 315.230 kb on - strand, within DDA3937_RS01415 at 315.230 kb on - strand, within DDA3937_RS01415 at 315.308 kb on + strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.369 kb on + strand, within DDA3937_RS01415 at 315.375 kb on + strand, within DDA3937_RS01415 at 315.375 kb on + strand, within DDA3937_RS01415 at 315.375 kb on + strand, within DDA3937_RS01415 at 315.376 kb on - strand, within DDA3937_RS01415 at 315.433 kb on - strand, within DDA3937_RS01415 at 315.453 kb on + strand, within DDA3937_RS01415 at 315.454 kb on - strand, within DDA3937_RS01415 at 315.454 kb on - strand, within DDA3937_RS01415 at 315.555 kb on + strand, within DDA3937_RS01415 at 315.658 kb on + strand, within DDA3937_RS01415 at 315.659 kb on - strand, within DDA3937_RS01415 at 315.659 kb on - strand, within DDA3937_RS01415 at 315.708 kb on + strand, within DDA3937_RS01415 at 315.721 kb on - strand, within DDA3937_RS01415 at 315.752 kb on + strand, within DDA3937_RS01415 at 315.753 kb on - strand, within DDA3937_RS01415 at 315.753 kb on - strand, within DDA3937_RS01415
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 314,224 + -0.5 314,374 - DDA3937_RS01410 0.11 -1.6 314,374 - DDA3937_RS01410 0.11 -1.5 314,456 - DDA3937_RS01410 0.24 -3.6 314,456 - DDA3937_RS01410 0.24 -1.3 314,511 - DDA3937_RS01410 0.34 -2.2 314,625 + DDA3937_RS01410 0.53 -3.0 314,626 - DDA3937_RS01410 0.53 -1.6 314,626 - DDA3937_RS01410 0.53 -2.0 314,704 + DDA3937_RS01410 0.66 -0.2 314,770 + DDA3937_RS01410 0.77 -2.0 314,783 - DDA3937_RS01410 0.79 -1.6 314,887 + -1.0 314,887 + +0.4 314,887 + -1.0 314,887 + +0.2 314,887 + +0.9 314,887 + -0.4 314,888 - -1.6 314,888 - -0.0 314,888 - -0.8 314,888 - +1.1 314,888 - -0.0 314,888 - -0.0 314,960 + -0.9 315,006 + -1.0 315,089 + DDA3937_RS01415 0.11 +1.1 315,147 + DDA3937_RS01415 0.17 -0.1 315,229 + DDA3937_RS01415 0.25 -1.6 315,229 + DDA3937_RS01415 0.25 -1.0 315,229 + DDA3937_RS01415 0.25 -2.5 315,229 + DDA3937_RS01415 0.25 -1.0 315,229 + DDA3937_RS01415 0.25 +2.4 315,230 - DDA3937_RS01415 0.25 +0.2 315,230 - DDA3937_RS01415 0.25 -1.4 315,230 - DDA3937_RS01415 0.25 -1.8 315,308 + DDA3937_RS01415 0.33 +0.8 315,309 - DDA3937_RS01415 0.33 +1.3 315,309 - DDA3937_RS01415 0.33 -1.6 315,309 - DDA3937_RS01415 0.33 -1.1 315,309 - DDA3937_RS01415 0.33 +0.3 315,369 + DDA3937_RS01415 0.39 +0.7 315,375 + DDA3937_RS01415 0.40 -0.3 315,375 + DDA3937_RS01415 0.40 -1.8 315,375 + DDA3937_RS01415 0.40 -1.9 315,376 - DDA3937_RS01415 0.40 -0.6 315,433 - DDA3937_RS01415 0.46 -1.8 315,453 + DDA3937_RS01415 0.48 +1.1 315,454 - DDA3937_RS01415 0.48 +0.8 315,454 - DDA3937_RS01415 0.48 -2.0 315,555 + DDA3937_RS01415 0.58 -1.3 315,658 + DDA3937_RS01415 0.68 -1.3 315,659 - DDA3937_RS01415 0.68 -1.8 315,659 - DDA3937_RS01415 0.68 +1.1 315,708 + DDA3937_RS01415 0.73 +0.6 315,721 - DDA3937_RS01415 0.74 -0.9 315,752 + DDA3937_RS01415 0.78 -0.1 315,753 - DDA3937_RS01415 0.78 +0.5 315,753 - DDA3937_RS01415 0.78 +0.0
Or see this region's nucleotide sequence