Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01220 and DDA3937_RS01225 are separated by 599 nucleotides DDA3937_RS01225 and DDA3937_RS01230 are separated by 70 nucleotides DDA3937_RS01230 and DDA3937_RS01235 are separated by 104 nucleotides DDA3937_RS01235 and DDA3937_RS01240 are separated by 168 nucleotides
DDA3937_RS01220: DDA3937_RS01220 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 276,316 to 277,905
_RS01220
DDA3937_RS01225: DDA3937_RS01225 - 16S ribosomal RNA, at 278,505 to 280,046
_RS01225
DDA3937_RS01230: DDA3937_RS01230 - tRNA-Ile, at 280,117 to 280,193
_RS01230
DDA3937_RS01235: DDA3937_RS01235 - tRNA-Ala, at 280,298 to 280,373
_RS01235
DDA3937_RS01240: DDA3937_RS01240 - 23S ribosomal RNA, at 280,542 to 283,449
_RS01240
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 277.510 kb on - strand, within DDA3937_RS01220 at 277.510 kb on - strand, within DDA3937_RS01220 at 277.510 kb on - strand, within DDA3937_RS01220 at 277.603 kb on + strand, within DDA3937_RS01220 at 277.681 kb on + strand, within DDA3937_RS01220 at 277.681 kb on + strand, within DDA3937_RS01220 at 277.681 kb on + strand, within DDA3937_RS01220 at 277.681 kb on + strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.865 kb on - strand at 277.926 kb on + strand at 277.926 kb on + strand at 277.926 kb on + strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.934 kb on + strand at 277.934 kb on + strand at 277.934 kb on + strand at 277.935 kb on - strand at 277.950 kb on - strand at 277.957 kb on + strand at 277.958 kb on - strand at 277.958 kb on - strand at 277.971 kb on + strand at 277.971 kb on + strand at 277.972 kb on - strand at 277.972 kb on - strand at 277.981 kb on + strand at 278.008 kb on - strand at 278.023 kb on - strand at 278.033 kb on + strand at 278.033 kb on + strand at 278.033 kb on + strand at 278.033 kb on + strand at 278.034 kb on - strand at 278.034 kb on - strand at 278.051 kb on - strand at 278.051 kb on - strand at 278.095 kb on + strand at 278.095 kb on + strand at 278.096 kb on - strand at 278.096 kb on - strand at 278.121 kb on + strand at 278.122 kb on - strand at 278.126 kb on + strand at 278.126 kb on + strand at 278.127 kb on - strand at 278.128 kb on + strand at 278.128 kb on + strand at 278.128 kb on + strand at 278.129 kb on - strand at 278.129 kb on - strand at 278.129 kb on - strand at 278.129 kb on - strand at 278.129 kb on - strand at 278.170 kb on - strand at 278.208 kb on - strand at 278.210 kb on - strand at 278.971 kb on + strand, within DDA3937_RS01225 at 278.971 kb on + strand, within DDA3937_RS01225
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 277,510 - DDA3937_RS01220 0.75 -1.3 277,510 - DDA3937_RS01220 0.75 -0.6 277,510 - DDA3937_RS01220 0.75 -2.3 277,603 + DDA3937_RS01220 0.81 -1.5 277,681 + DDA3937_RS01220 0.86 -0.0 277,681 + DDA3937_RS01220 0.86 -1.8 277,681 + DDA3937_RS01220 0.86 -1.8 277,681 + DDA3937_RS01220 0.86 -0.6 277,682 - DDA3937_RS01220 0.86 -1.9 277,682 - DDA3937_RS01220 0.86 -2.7 277,682 - DDA3937_RS01220 0.86 -1.0 277,682 - DDA3937_RS01220 0.86 -3.6 277,682 - DDA3937_RS01220 0.86 -4.8 277,682 - DDA3937_RS01220 0.86 -1.8 277,682 - DDA3937_RS01220 0.86 -2.4 277,682 - DDA3937_RS01220 0.86 -2.4 277,865 - -2.4 277,926 + -0.8 277,926 + -2.4 277,926 + -2.7 277,927 - -0.2 277,927 - +1.3 277,927 - -1.3 277,927 - -0.8 277,927 - -1.5 277,927 - +0.3 277,927 - -0.5 277,927 - -2.6 277,927 - -1.9 277,934 + -1.8 277,934 + -2.8 277,934 + -2.2 277,935 - -1.1 277,950 - -0.9 277,957 + -0.8 277,958 - -0.5 277,958 - -1.0 277,971 + -1.9 277,971 + -0.0 277,972 - -2.3 277,972 - -1.3 277,981 + -2.4 278,008 - -0.2 278,023 - -0.6 278,033 + -1.6 278,033 + -1.4 278,033 + -1.2 278,033 + -0.5 278,034 - -0.5 278,034 - -0.8 278,051 - -0.6 278,051 - +4.1 278,095 + +0.0 278,095 + +0.5 278,096 - -1.3 278,096 - -0.2 278,121 + +0.1 278,122 - -1.6 278,126 + -2.3 278,126 + -0.4 278,127 - -2.8 278,128 + +0.4 278,128 + -0.9 278,128 + -1.0 278,129 - -0.5 278,129 - -0.6 278,129 - -0.2 278,129 - +1.5 278,129 - -0.5 278,170 - +1.1 278,208 - -1.7 278,210 - -0.6 278,971 + DDA3937_RS01225 0.30 -1.8 278,971 + DDA3937_RS01225 0.30 -0.9
Or see this region's nucleotide sequence