Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00590

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
138,612	+		DDA3937_RS00580	0.40	-2.8
138,613	-		DDA3937_RS00580	0.40	-0.8
138,620	+		DDA3937_RS00580	0.41	-3.1
138,621	-		DDA3937_RS00580	0.41	-1.7
138,666	-		DDA3937_RS00580	0.46	-0.6
138,666	-		DDA3937_RS00580	0.46	+0.8
138,669	+		DDA3937_RS00580	0.46	+0.7
138,669	+		DDA3937_RS00580	0.46	-0.2
138,669	+		DDA3937_RS00580	0.46	-1.1
138,670	-		DDA3937_RS00580	0.46	-1.5
138,670	-		DDA3937_RS00580	0.46	-1.4
138,776	+		DDA3937_RS00580	0.57	-2.1
138,777	-		DDA3937_RS00580	0.57	-1.8
138,777	-		DDA3937_RS00580	0.57	-1.3
138,777	-		DDA3937_RS00580	0.57	-2.6
138,777	-		DDA3937_RS00580	0.57	-1.6
138,777	-		DDA3937_RS00580	0.57	+0.3
138,777	-		DDA3937_RS00580	0.57	-2.6
138,777	-		DDA3937_RS00580	0.57	-1.2
138,782	+		DDA3937_RS00580	0.58	-3.2
138,783	-		DDA3937_RS00580	0.58	-1.0
138,783	-		DDA3937_RS00580	0.58	-1.2
138,869	+		DDA3937_RS00580	0.67	-2.7
138,869	+		DDA3937_RS00580	0.67	+0.1
138,870	-		DDA3937_RS00580	0.67	-3.3
138,870	-		DDA3937_RS00580	0.67	-0.4
138,908	+		DDA3937_RS00580	0.71	-1.5
138,908	+		DDA3937_RS00580	0.71	-1.4
138,908	+		DDA3937_RS00580	0.71	-0.4
138,908	+				-0.4
138,909	-		DDA3937_RS00580	0.72	-1.2
138,909	-		DDA3937_RS00580	0.72	-1.2
139,022	+		DDA3937_RS00580	0.84	+0.8
139,022	+		DDA3937_RS00580	0.84	+0.9
139,022	+		DDA3937_RS00580	0.84	-2.0
139,022	+		DDA3937_RS00580	0.84	-1.4
139,022	+		DDA3937_RS00580	0.84	-2.4
139,022	+		DDA3937_RS00580	0.84	-0.7
139,022	+		DDA3937_RS00580	0.84	-2.7
139,022	+		DDA3937_RS00580	0.84	-2.5
139,022	+		DDA3937_RS00580	0.84	-0.5
139,023	-		DDA3937_RS00580	0.84	-1.0
139,023	-		DDA3937_RS00580	0.84	+1.4
139,023	-		DDA3937_RS00580	0.84	-0.0
139,023	-		DDA3937_RS00580	0.84	+0.4
139,023	-		DDA3937_RS00580	0.84	-1.9
139,023	-		DDA3937_RS00580	0.84	-1.6
139,023	-		DDA3937_RS00580	0.84	-1.2
139,023	-		DDA3937_RS00580	0.84	-1.9
139,023	-		DDA3937_RS00580	0.84	-1.0
139,023	-		DDA3937_RS00580	0.84	-1.2
139,023	-		DDA3937_RS00580	0.84	+1.0
139,023	-		DDA3937_RS00580	0.84	-2.3
139,027	+		DDA3937_RS00580	0.84	-2.1
139,027	+		DDA3937_RS00580	0.84	-0.0
139,027	+		DDA3937_RS00580	0.84	-1.0
139,027	+		DDA3937_RS00580	0.84	-0.5
139,027	+		DDA3937_RS00580	0.84	-2.2
139,028	-		DDA3937_RS00580	0.84	-1.0
139,028	-		DDA3937_RS00580	0.84	-0.7
139,028	-		DDA3937_RS00580	0.84	-0.5
139,028	-		DDA3937_RS00580	0.84	-0.4
139,048	+		DDA3937_RS00580	0.86	-1.6
139,064	+		DDA3937_RS00580	0.88	-2.0
139,064	+		DDA3937_RS00580	0.88	-1.1
139,064	+				-0.4
139,064	+		DDA3937_RS00580	0.88	-0.1
139,064	+		DDA3937_RS00580	0.88	-1.7
139,149	+				-1.8
139,187	+				-1.2
139,187	+				-1.0
139,235	+				-1.7
139,236	-				+3.7
139,236	-				+0.9
139,236	-				+1.2
139,308	-				-0.2
139,308	-				-2.1
139,308	-				-1.0
139,308	-				+4.2
139,308	-				+0.7
139,308	-				-1.0
139,328	+				-0.1
139,328	+				-2.2
139,329	-				-3.0
139,329	-				-1.3
139,329	-				-0.2
139,329	-				+0.9
139,336	-				-0.2
139,341	+				-1.0
139,341	+				-0.0
139,341	+				-0.0
139,341	+				+0.3
139,342	-				+0.1
139,342	-				-0.3
139,342	-				+1.0
139,578	-				-1.8
139,578	-				-1.4
139,578	-				-0.6
139,582	+				-0.7
139,582	+				-0.3
139,583	-				-0.8
139,583	-				-1.8
139,583	-				+0.8
139,590	+				-0.2
139,632	+				-1.9
139,633	-				+0.3
139,633	-				-0.8
139,633	-				-0.6
139,703	+				-1.4
139,704	-				+0.7
139,879	+		DDA3937_RS00590	0.28	-0.4
139,880	-		DDA3937_RS00590	0.28	-0.0
139,880	-		DDA3937_RS00590	0.28	-0.8
139,898	+		DDA3937_RS00590	0.30	-1.8
139,898	+		DDA3937_RS00590	0.30	-1.2
139,898	+		DDA3937_RS00590	0.30	+1.6
139,898	+		DDA3937_RS00590	0.30	-1.0
139,899	-		DDA3937_RS00590	0.30	-0.9
139,899	-		DDA3937_RS00590	0.30	-1.7
139,912	-		DDA3937_RS00590	0.31	+1.2
140,028	+		DDA3937_RS00590	0.43	+9.4
140,087	+		DDA3937_RS00590	0.49	+0.9
140,088	-		DDA3937_RS00590	0.49	-1.9
140,088	-		DDA3937_RS00590	0.49	-1.2
140,220	+		DDA3937_RS00590	0.62	+0.2
140,221	-		DDA3937_RS00590	0.62	+0.4
140,238	+		DDA3937_RS00590	0.64	-0.3
140,239	-		DDA3937_RS00590	0.64	-2.0
140,239	-		DDA3937_RS00590	0.64	+0.6
140,239	-		DDA3937_RS00590	0.64	+0.7
140,242	-		DDA3937_RS00590	0.64	-0.6
140,247	+		DDA3937_RS00590	0.65	-1.6
140,315	-		DDA3937_RS00590	0.72	-0.2
140,363	-		DDA3937_RS00590	0.77	-0.0
140,363	-		DDA3937_RS00590	0.77	+4.6
140,439	+		DDA3937_RS00590	0.84	-1.0
140,509	+				-1.0
140,509	+				-0.0
140,509	+				-2.4
140,510	-				+0.3
140,510	-				-0.2
140,510	-				-0.3
140,510	-				-0.3
140,510	-				+0.9
140,514	-				+0.3
140,625	+				-1.7
140,625	+				+0.9
140,625	+				-0.1
140,625	+				+2.4
140,626	-				-1.0
140,626	-				-0.5
140,626	-				-1.3
140,627	+				-1.0
140,628	-				-1.0
140,647	+				-0.4
140,647	+				-1.3
140,647	+				-0.5
140,647	+				-3.6
140,648	-				+0.2
140,648	-				+0.1
140,648	-				-0.0
140,649	+				+1.0
140,649	+				-0.1
140,649	+				-0.1
140,649	+				-0.7
140,650	-				-0.8
140,650	-				-1.1
140,650	-				-0.3
140,650	-				-0.7
140,650	-				+2.0
140,650	-				-3.2
140,650	-				-0.5
140,650	-				-1.2
140,650	-				-0.4
140,650	-				+0.1
140,651	+				-1.5
140,651	+				-1.8
140,651	+				+0.3
140,651	+				-1.1
140,651	+				-0.2
140,651	+				-0.2
140,651	+				-1.4
140,651	+				-0.2
140,652	-				-1.0
140,652	-				-2.4
140,652	-				+1.5
140,657	+				-1.2
140,658	-				-1.8
140,728	-				+1.0
140,824	+				-1.0
140,881	-				-0.2
140,890	+				-0.2
140,903	+				+0.4
140,903	+				+0.0
140,942	+		DDA3937_RS00595	0.12	-2.2
140,942	+				+2.7
140,942	+		DDA3937_RS00595	0.12	-0.2
140,942	+		DDA3937_RS00595	0.12	-0.8
140,942	-		DDA3937_RS00595	0.12	-1.2
140,943	-		DDA3937_RS00595	0.12	+0.9
140,943	-		DDA3937_RS00595	0.12	-0.4
140,943	-		DDA3937_RS00595	0.12	+0.1
140,943	-		DDA3937_RS00595	0.12	+0.3
140,943	-		DDA3937_RS00595	0.12	-0.0
140,943	-		DDA3937_RS00595	0.12	-0.4
140,943	-		DDA3937_RS00595	0.12	+2.1
140,997	+		DDA3937_RS00595	0.16	-0.3
140,997	+		DDA3937_RS00595	0.16	+1.1
140,997	+		DDA3937_RS00595	0.16	-0.3
140,998	-		DDA3937_RS00595	0.16	-1.9
140,998	-		DDA3937_RS00595	0.16	+0.9
140,998	-		DDA3937_RS00595	0.16	-0.6
140,998	-		DDA3937_RS00595	0.16	-0.4
140,998	-		DDA3937_RS00595	0.16	-1.4
140,998	-		DDA3937_RS00595	0.16	+0.4
140,998	-		DDA3937_RS00595	0.16	+1.1
140,998	-		DDA3937_RS00595	0.16	+1.1
141,002	+		DDA3937_RS00595	0.17	-0.8
141,002	+				+0.2
141,003	-		DDA3937_RS00595	0.17	+0.1
141,011	-		DDA3937_RS00595	0.17	-1.9
141,109	-		DDA3937_RS00595	0.25	+0.3
141,109	-		DDA3937_RS00595	0.25	-1.1
141,114	-		DDA3937_RS00595	0.26	-0.7
141,293	+		DDA3937_RS00595	0.40	-0.2
141,294	-		DDA3937_RS00595	0.41	-1.2
141,335	+		DDA3937_RS00595	0.44	+0.8
141,335	+		DDA3937_RS00595	0.44	-1.9
141,335	+		DDA3937_RS00595	0.44	-0.9
141,336	-		DDA3937_RS00595	0.44	-0.1
141,336	-		DDA3937_RS00595	0.44	-1.4
141,430	-		DDA3937_RS00595	0.52	-0.2
141,463	-		DDA3937_RS00595	0.54	-2.5
141,463	-		DDA3937_RS00595	0.54	-1.5
141,463	-		DDA3937_RS00595	0.54	-0.5
141,463	-		DDA3937_RS00595	0.54	+0.8
141,482	+		DDA3937_RS00595	0.56	-0.4
141,483	-		DDA3937_RS00595	0.56	-0.6
141,535	+		DDA3937_RS00595	0.60	-1.4
141,535	+		DDA3937_RS00595	0.60	-0.1
141,536	-		DDA3937_RS00595	0.60	-0.2
141,536	-		DDA3937_RS00595	0.60	+0.1
141,536	-		DDA3937_RS00595	0.60	+0.2
141,549	-		DDA3937_RS00595	0.61	-0.2