Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00445

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00440 and DDA3937_RS00445 are separated by 159 nucleotidesDDA3937_RS00445 and DDA3937_RS00450 are separated by 12 nucleotidesDDA3937_RS00450 and DDA3937_RS00455 are separated by 105 nucleotides DDA3937_RS00440: DDA3937_RS00440 - anion permease, at 102,431 to 103,843 _RS00440 DDA3937_RS00445: DDA3937_RS00445 - two-component system sensor histidine kinase DcuS, at 104,003 to 105,616 _RS00445 DDA3937_RS00450: DDA3937_RS00450 - two-component system response regulator DcuR, at 105,629 to 106,351 _RS00450 DDA3937_RS00455: DDA3937_RS00455 - 2-hydroxycarboxylate transporter family protein, at 106,457 to 107,800 _RS00455 Position (kb) 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 103.003 kb on + strand, within DDA3937_RS00440at 103.013 kb on - strand, within DDA3937_RS00440at 103.140 kb on - strand, within DDA3937_RS00440at 103.148 kb on + strand, within DDA3937_RS00440at 103.148 kb on + strand, within DDA3937_RS00440at 103.372 kb on - strand, within DDA3937_RS00440at 103.538 kb on + strand, within DDA3937_RS00440at 103.538 kb on + strand, within DDA3937_RS00440at 103.538 kb on + strand, within DDA3937_RS00440at 103.538 kb on + strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.544 kb on + strand, within DDA3937_RS00440at 103.544 kb on + strand, within DDA3937_RS00440at 103.544 kb on + strand, within DDA3937_RS00440at 103.545 kb on - strand, within DDA3937_RS00440at 103.545 kb on - strand, within DDA3937_RS00440at 103.545 kb on - strand, within DDA3937_RS00440at 103.553 kb on + strand, within DDA3937_RS00440at 103.592 kb on + strand, within DDA3937_RS00440at 103.592 kb on + strand, within DDA3937_RS00440at 103.592 kb on + strand, within DDA3937_RS00440at 103.593 kb on - strand, within DDA3937_RS00440at 103.694 kb on + strandat 103.695 kb on - strand, within DDA3937_RS00440at 103.695 kb on - strand, within DDA3937_RS00440at 103.733 kb on + strandat 103.841 kb on + strandat 103.841 kb on + strandat 103.841 kb on + strandat 103.841 kb on + strandat 103.842 kb on - strandat 103.844 kb on + strandat 103.845 kb on - strandat 103.879 kb on - strandat 103.968 kb on + strandat 103.969 kb on - strandat 104.009 kb on - strandat 104.226 kb on + strand, within DDA3937_RS00445at 104.226 kb on + strand, within DDA3937_RS00445at 104.226 kb on + strand, within DDA3937_RS00445at 104.227 kb on - strand, within DDA3937_RS00445at 104.449 kb on + strand, within DDA3937_RS00445at 104.449 kb on + strand, within DDA3937_RS00445at 104.996 kb on + strand, within DDA3937_RS00445at 105.000 kb on - strand, within DDA3937_RS00445at 105.077 kb on + strand, within DDA3937_RS00445at 105.078 kb on - strand, within DDA3937_RS00445at 105.078 kb on - strand, within DDA3937_RS00445at 105.098 kb on + strand, within DDA3937_RS00445at 105.098 kb on + strand, within DDA3937_RS00445at 105.098 kb on + strand, within DDA3937_RS00445at 105.098 kb on + strand, within DDA3937_RS00445at 105.099 kb on - strand, within DDA3937_RS00445at 105.101 kb on - strand, within DDA3937_RS00445at 105.118 kb on + strand, within DDA3937_RS00445at 105.119 kb on - strand, within DDA3937_RS00445at 105.119 kb on - strand, within DDA3937_RS00445at 105.122 kb on + strand, within DDA3937_RS00445at 105.123 kb on - strand, within DDA3937_RS00445at 105.123 kb on - strand, within DDA3937_RS00445at 105.156 kb on + strand, within DDA3937_RS00445at 105.156 kb on + strand, within DDA3937_RS00445at 105.156 kb on + strand, within DDA3937_RS00445at 105.157 kb on - strand, within DDA3937_RS00445at 105.157 kb on - strand, within DDA3937_RS00445at 105.157 kb on - strand, within DDA3937_RS00445at 105.387 kb on + strand, within DDA3937_RS00445at 105.387 kb on + strand, within DDA3937_RS00445at 105.388 kb on - strand, within DDA3937_RS00445at 105.388 kb on - strand, within DDA3937_RS00445at 105.388 kb on - strand, within DDA3937_RS00445at 105.388 kb on - strand, within DDA3937_RS00445at 105.446 kb on + strand, within DDA3937_RS00445at 105.447 kb on - strand, within DDA3937_RS00445at 105.494 kb on + strandat 105.494 kb on + strandat 105.495 kb on - strandat 105.560 kb on + strandat 105.580 kb on + strandat 105.580 kb on + strandat 105.580 kb on + strandat 105.581 kb on - strandat 105.581 kb on - strandat 105.614 kb on + strandat 105.615 kb on - strandat 105.633 kb on + strandat 105.634 kb on - strandat 105.634 kb on - strandat 105.634 kb on - strandat 105.639 kb on + strandat 105.679 kb on + strandat 105.679 kb on + strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.686 kb on + strandat 105.687 kb on - strandat 105.717 kb on - strand, within DDA3937_RS00450at 105.796 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.871 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.897 kb on - strand, within DDA3937_RS00450at 105.897 kb on - strand, within DDA3937_RS00450at 105.897 kb on - strand, within DDA3937_RS00450at 105.935 kb on + strand, within DDA3937_RS00450at 105.936 kb on - strand, within DDA3937_RS00450at 106.060 kb on + strand, within DDA3937_RS00450at 106.080 kb on + strand, within DDA3937_RS00450at 106.081 kb on - strand, within DDA3937_RS00450at 106.224 kb on - strand, within DDA3937_RS00450at 106.232 kb on + strand, within DDA3937_RS00450at 106.232 kb on + strand, within DDA3937_RS00450at 106.233 kb on - strand, within DDA3937_RS00450at 106.259 kb on - strand, within DDA3937_RS00450at 106.295 kb on + strandat 106.295 kb on + strandat 106.349 kb on + strandat 106.350 kb on - strandat 106.400 kb on + strandat 106.400 kb on + strandat 106.439 kb on + strandat 106.440 kb on - strandat 106.458 kb on + strandat 106.458 kb on + strandat 106.458 kb on + strandat 106.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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103,003 + DDA3937_RS00440 0.40 +0.3
103,013 - DDA3937_RS00440 0.41 -0.4
103,140 - DDA3937_RS00440 0.50 -0.0
103,148 + DDA3937_RS00440 0.51 -0.6
103,148 + DDA3937_RS00440 0.51 +0.8
103,372 - DDA3937_RS00440 0.67 -0.1
103,538 + DDA3937_RS00440 0.78 -0.3
103,538 + DDA3937_RS00440 0.78 -0.1
103,538 + DDA3937_RS00440 0.78 -0.1
103,538 + DDA3937_RS00440 0.78 -0.0
103,539 - DDA3937_RS00440 0.78 -2.0
103,539 - DDA3937_RS00440 0.78 -0.2
103,539 - DDA3937_RS00440 0.78 -0.4
103,539 - DDA3937_RS00440 0.78 -0.1
103,539 - DDA3937_RS00440 0.78 -1.4
103,541 + DDA3937_RS00440 0.79 +1.6
103,541 + DDA3937_RS00440 0.79 -0.0
103,541 + DDA3937_RS00440 0.79 -0.6
103,541 + DDA3937_RS00440 0.79 +0.9
103,541 + DDA3937_RS00440 0.79 -0.8
103,544 + DDA3937_RS00440 0.79 -2.2
103,544 + DDA3937_RS00440 0.79 -0.5
103,544 + DDA3937_RS00440 0.79 -0.1
103,545 - DDA3937_RS00440 0.79 +0.2
103,545 - DDA3937_RS00440 0.79 +0.8
103,545 - DDA3937_RS00440 0.79 -0.4
103,553 + DDA3937_RS00440 0.79 -0.0
103,592 + DDA3937_RS00440 0.82 -0.2
103,592 + DDA3937_RS00440 0.82 -1.2
103,592 + DDA3937_RS00440 0.82 -0.4
103,593 - DDA3937_RS00440 0.82 -1.8
103,694 + -0.8
103,695 - DDA3937_RS00440 0.89 -0.7
103,695 - DDA3937_RS00440 0.89 +2.1
103,733 + +0.8
103,841 + +0.1
103,841 + -1.3
103,841 + -1.6
103,841 + +0.3
103,842 - +0.7
103,844 + -2.2
103,845 - -0.9
103,879 - -1.5
103,968 + -0.6
103,969 - -0.4
104,009 - -1.9
104,226 + DDA3937_RS00445 0.14 -0.8
104,226 + DDA3937_RS00445 0.14 -0.2
104,226 + DDA3937_RS00445 0.14 +0.6
104,227 - DDA3937_RS00445 0.14 -0.5
104,449 + DDA3937_RS00445 0.28 +4.8
104,449 + DDA3937_RS00445 0.28 +1.1
104,996 + DDA3937_RS00445 0.62 -1.7
105,000 - DDA3937_RS00445 0.62 -0.8
105,077 + DDA3937_RS00445 0.67 +0.4
105,078 - DDA3937_RS00445 0.67 +1.9
105,078 - DDA3937_RS00445 0.67 -0.6
105,098 + DDA3937_RS00445 0.68 -0.0
105,098 + DDA3937_RS00445 0.68 -0.3
105,098 + DDA3937_RS00445 0.68 +0.9
105,098 + DDA3937_RS00445 0.68 -2.2
105,099 - DDA3937_RS00445 0.68 +0.4
105,101 - DDA3937_RS00445 0.68 -0.3
105,118 + DDA3937_RS00445 0.69 -1.4
105,119 - DDA3937_RS00445 0.69 +0.6
105,119 - DDA3937_RS00445 0.69 +0.3
105,122 + DDA3937_RS00445 0.69 +2.6
105,123 - DDA3937_RS00445 0.69 +0.2
105,123 - DDA3937_RS00445 0.69 +0.4
105,156 + DDA3937_RS00445 0.71 -0.1
105,156 + DDA3937_RS00445 0.71 -1.0
105,156 + DDA3937_RS00445 0.71 -0.2
105,157 - DDA3937_RS00445 0.71 +2.3
105,157 - DDA3937_RS00445 0.71 -0.3
105,157 - DDA3937_RS00445 0.71 -0.2
105,387 + DDA3937_RS00445 0.86 -1.6
105,387 + DDA3937_RS00445 0.86 -1.9
105,388 - DDA3937_RS00445 0.86 -1.6
105,388 - DDA3937_RS00445 0.86 -2.3
105,388 - DDA3937_RS00445 0.86 -1.4
105,388 - DDA3937_RS00445 0.86 -0.8
105,446 + DDA3937_RS00445 0.89 -1.4
105,447 - DDA3937_RS00445 0.89 -2.0
105,494 + +0.4
105,494 + +1.0
105,495 - -2.1
105,560 + +0.6
105,580 + +1.2
105,580 + -0.2
105,580 + +0.4
105,581 - -1.0
105,581 - -0.8
105,614 + +1.1
105,615 - -0.3
105,633 + +0.5
105,634 - -1.6
105,634 - +1.2
105,634 - -0.8
105,639 + +0.8
105,679 + -0.6
105,679 + -1.2
105,680 - -0.8
105,680 - -1.5
105,680 - -1.9
105,680 - -0.9
105,680 - -0.6
105,680 - -0.8
105,686 + -2.2
105,687 - -2.2
105,717 - DDA3937_RS00450 0.12 -0.3
105,796 + DDA3937_RS00450 0.23 -1.6
105,800 + DDA3937_RS00450 0.24 -2.6
105,800 + DDA3937_RS00450 0.24 -0.7
105,800 + DDA3937_RS00450 0.24 -0.9
105,800 + DDA3937_RS00450 0.24 -3.5
105,800 + DDA3937_RS00450 0.24 -0.2
105,800 + DDA3937_RS00450 0.24 -0.2
105,800 + DDA3937_RS00450 0.24 -1.1
105,800 + DDA3937_RS00450 0.24 +0.6
105,800 + DDA3937_RS00450 0.24 -1.1
105,800 + DDA3937_RS00450 0.24 +0.1
105,800 + DDA3937_RS00450 0.24 -2.5
105,800 + DDA3937_RS00450 0.24 -2.7
105,800 + DDA3937_RS00450 0.24 -1.1
105,801 - DDA3937_RS00450 0.24 -1.8
105,801 - DDA3937_RS00450 0.24 +0.1
105,801 - DDA3937_RS00450 0.24 -1.4
105,801 - DDA3937_RS00450 0.24 -1.2
105,801 - DDA3937_RS00450 0.24 -1.5
105,801 - DDA3937_RS00450 0.24 -1.1
105,801 - DDA3937_RS00450 0.24 -0.0
105,801 - DDA3937_RS00450 0.24 +0.3
105,867 + DDA3937_RS00450 0.33 -2.3
105,867 + DDA3937_RS00450 0.33 -0.4
105,867 + DDA3937_RS00450 0.33 -1.8
105,867 + DDA3937_RS00450 0.33 -1.6
105,867 + DDA3937_RS00450 0.33 -0.0
105,868 - DDA3937_RS00450 0.33 -3.1
105,868 - DDA3937_RS00450 0.33 -0.8
105,868 - DDA3937_RS00450 0.33 -1.2
105,868 - DDA3937_RS00450 0.33 -0.8
105,868 - DDA3937_RS00450 0.33 +0.8
105,868 - DDA3937_RS00450 0.33 -0.6
105,868 - DDA3937_RS00450 0.33 -0.7
105,871 + DDA3937_RS00450 0.33 +1.4
105,896 + DDA3937_RS00450 0.37 -2.5
105,896 + DDA3937_RS00450 0.37 -1.6
105,896 + DDA3937_RS00450 0.37 -2.5
105,896 + DDA3937_RS00450 0.37 -3.5
105,896 + DDA3937_RS00450 0.37 -3.7
105,896 + DDA3937_RS00450 0.37 -0.4
105,896 + DDA3937_RS00450 0.37 -1.6
105,896 + DDA3937_RS00450 0.37 -0.3
105,896 + DDA3937_RS00450 0.37 +2.3
105,896 + DDA3937_RS00450 0.37 -0.8
105,896 + DDA3937_RS00450 0.37 -0.6
105,896 + DDA3937_RS00450 0.37 +1.2
105,897 - DDA3937_RS00450 0.37 +1.1
105,897 - DDA3937_RS00450 0.37 -2.4
105,897 - DDA3937_RS00450 0.37 -0.2
105,935 + DDA3937_RS00450 0.42 -0.3
105,936 - DDA3937_RS00450 0.42 -1.8
106,060 + DDA3937_RS00450 0.60 -1.3
106,080 + DDA3937_RS00450 0.62 -0.7
106,081 - DDA3937_RS00450 0.63 -1.0
106,224 - DDA3937_RS00450 0.82 -1.2
106,232 + DDA3937_RS00450 0.83 -2.5
106,232 + DDA3937_RS00450 0.83 -1.5
106,233 - DDA3937_RS00450 0.84 -1.7
106,259 - DDA3937_RS00450 0.87 -1.5
106,295 + -1.9
106,295 + -0.8
106,349 + -1.0
106,350 - +0.0
106,400 + -1.0
106,400 + -0.4
106,439 + -1.5
106,440 - +0.1
106,458 + +0.2
106,458 + +0.8
106,458 + -0.0
106,459 - -0.1

Or see this region's nucleotide sequence