Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00300 and DDA3937_RS00305 are separated by 53 nucleotides DDA3937_RS00305 and DDA3937_RS00310 overlap by 4 nucleotides DDA3937_RS00310 and DDA3937_RS00315 are separated by 4 nucleotides
DDA3937_RS00300: DDA3937_RS00300 - extracellular solute-binding protein, at 70,225 to 71,595
_RS00300
DDA3937_RS00305: DDA3937_RS00305 - sugar ABC transporter permease, at 71,649 to 72,566
_RS00305
DDA3937_RS00310: DDA3937_RS00310 - carbohydrate ABC transporter permease, at 72,563 to 73,609
_RS00310
DDA3937_RS00315: DDA3937_RS00315 - ABC transporter ATP-binding protein, at 73,614 to 74,717
_RS00315
Position (kb) 72
73
74 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 71.649 kb on - strand at 71.798 kb on - strand, within DDA3937_RS00305 at 71.798 kb on - strand, within DDA3937_RS00305 at 71.798 kb on - strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.881 kb on - strand, within DDA3937_RS00305 at 71.891 kb on + strand, within DDA3937_RS00305 at 72.019 kb on - strand, within DDA3937_RS00305 at 72.134 kb on - strand, within DDA3937_RS00305 at 72.207 kb on - strand, within DDA3937_RS00305 at 72.207 kb on - strand, within DDA3937_RS00305 at 72.318 kb on + strand, within DDA3937_RS00305 at 72.318 kb on + strand, within DDA3937_RS00305 at 72.319 kb on - strand, within DDA3937_RS00305 at 72.319 kb on - strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.351 kb on + strand, within DDA3937_RS00305 at 72.351 kb on + strand, within DDA3937_RS00305 at 72.351 kb on + strand, within DDA3937_RS00305 at 72.351 kb on + strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.384 kb on + strand, within DDA3937_RS00305 at 72.384 kb on + strand, within DDA3937_RS00305 at 72.399 kb on + strand, within DDA3937_RS00305 at 72.399 kb on + strand, within DDA3937_RS00305 at 72.399 kb on + strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.409 kb on - strand, within DDA3937_RS00305 at 72.409 kb on - strand, within DDA3937_RS00305 at 72.409 kb on - strand, within DDA3937_RS00305 at 72.409 kb on - strand, within DDA3937_RS00305 at 72.410 kb on + strand, within DDA3937_RS00305 at 72.410 kb on + strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.414 kb on + strand, within DDA3937_RS00305 at 72.414 kb on + strand, within DDA3937_RS00305 at 72.537 kb on - strand at 72.686 kb on + strand, within DDA3937_RS00310 at 72.686 kb on + strand, within DDA3937_RS00310 at 72.686 kb on + strand, within DDA3937_RS00310 at 72.686 kb on + strand, within DDA3937_RS00310 at 72.737 kb on + strand, within DDA3937_RS00310 at 72.737 kb on + strand, within DDA3937_RS00310 at 72.911 kb on + strand, within DDA3937_RS00310 at 72.911 kb on + strand, within DDA3937_RS00310 at 72.912 kb on - strand, within DDA3937_RS00310 at 72.912 kb on - strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.056 kb on - strand, within DDA3937_RS00310 at 73.056 kb on - strand, within DDA3937_RS00310 at 73.098 kb on + strand, within DDA3937_RS00310 at 73.098 kb on + strand, within DDA3937_RS00310 at 73.098 kb on + strand, within DDA3937_RS00310 at 73.099 kb on - strand, within DDA3937_RS00310 at 73.099 kb on - strand, within DDA3937_RS00310 at 73.099 kb on - strand, within DDA3937_RS00310 at 73.099 kb on - strand, within DDA3937_RS00310 at 73.157 kb on - strand, within DDA3937_RS00310 at 73.157 kb on - strand, within DDA3937_RS00310 at 73.363 kb on + strand, within DDA3937_RS00310 at 73.363 kb on + strand, within DDA3937_RS00310 at 73.406 kb on + strand at 73.406 kb on + strand, within DDA3937_RS00310 at 73.406 kb on + strand, within DDA3937_RS00310 at 73.460 kb on + strand, within DDA3937_RS00310 at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.553 kb on + strand at 73.554 kb on - strand at 73.554 kb on - strand at 73.560 kb on + strand at 73.601 kb on - strand at 73.601 kb on - strand at 73.627 kb on + strand at 73.628 kb on - strand at 73.628 kb on - strand at 73.628 kb on - strand at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.863 kb on + strand, within DDA3937_RS00315 at 73.890 kb on + strand, within DDA3937_RS00315 at 73.890 kb on + strand, within DDA3937_RS00315 at 73.975 kb on + strand, within DDA3937_RS00315 at 74.120 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.231 kb on + strand, within DDA3937_RS00315 at 74.277 kb on + strand, within DDA3937_RS00315 at 74.295 kb on - strand, within DDA3937_RS00315 at 74.380 kb on + strand, within DDA3937_RS00315 at 74.380 kb on + strand at 74.380 kb on + strand, within DDA3937_RS00315 at 74.380 kb on + strand, within DDA3937_RS00315 at 74.381 kb on - strand, within DDA3937_RS00315 at 74.381 kb on - strand, within DDA3937_RS00315 at 74.404 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 71,649 - +0.1 71,798 - DDA3937_RS00305 0.16 -0.4 71,798 - DDA3937_RS00305 0.16 -0.0 71,798 - DDA3937_RS00305 0.16 -1.8 71,880 + DDA3937_RS00305 0.25 -0.8 71,880 + DDA3937_RS00305 0.25 -0.9 71,880 + DDA3937_RS00305 0.25 +0.1 71,880 + DDA3937_RS00305 0.25 -0.8 71,880 + DDA3937_RS00305 0.25 +0.6 71,881 - DDA3937_RS00305 0.25 -1.8 71,891 + DDA3937_RS00305 0.26 +0.4 72,019 - DDA3937_RS00305 0.40 -0.1 72,134 - DDA3937_RS00305 0.53 -1.9 72,207 - DDA3937_RS00305 0.61 -1.2 72,207 - DDA3937_RS00305 0.61 -0.8 72,318 + DDA3937_RS00305 0.73 +1.2 72,318 + DDA3937_RS00305 0.73 -0.4 72,319 - DDA3937_RS00305 0.73 +0.6 72,319 - DDA3937_RS00305 0.73 +0.0 72,345 + DDA3937_RS00305 0.76 -0.8 72,345 + DDA3937_RS00305 0.76 -0.9 72,345 + DDA3937_RS00305 0.76 -0.7 72,345 + DDA3937_RS00305 0.76 -1.3 72,345 + DDA3937_RS00305 0.76 -0.8 72,351 + DDA3937_RS00305 0.76 -1.8 72,351 + DDA3937_RS00305 0.76 +2.2 72,351 + DDA3937_RS00305 0.76 +1.0 72,351 + DDA3937_RS00305 0.76 +0.5 72,352 - DDA3937_RS00305 0.77 -1.6 72,352 - DDA3937_RS00305 0.77 -1.2 72,352 - DDA3937_RS00305 0.77 -0.7 72,352 - DDA3937_RS00305 0.77 -0.1 72,352 - DDA3937_RS00305 0.77 +1.9 72,352 - DDA3937_RS00305 0.77 -3.4 72,352 - DDA3937_RS00305 0.77 +0.8 72,384 + DDA3937_RS00305 0.80 -0.3 72,384 + DDA3937_RS00305 0.80 +0.1 72,399 + DDA3937_RS00305 0.82 +0.5 72,399 + DDA3937_RS00305 0.82 +0.9 72,399 + DDA3937_RS00305 0.82 -0.0 72,400 - DDA3937_RS00305 0.82 +1.1 72,400 - DDA3937_RS00305 0.82 -0.1 72,400 - DDA3937_RS00305 0.82 -1.0 72,400 - DDA3937_RS00305 0.82 -1.0 72,400 - DDA3937_RS00305 0.82 -1.5 72,408 + DDA3937_RS00305 0.83 +0.6 72,408 + DDA3937_RS00305 0.83 +0.6 72,408 + DDA3937_RS00305 0.83 +0.6 72,408 + DDA3937_RS00305 0.83 +0.8 72,408 + DDA3937_RS00305 0.83 +0.6 72,408 + DDA3937_RS00305 0.83 -1.2 72,408 + DDA3937_RS00305 0.83 +0.8 72,409 - DDA3937_RS00305 0.83 -0.9 72,409 - DDA3937_RS00305 0.83 +0.2 72,409 - DDA3937_RS00305 0.83 -0.1 72,409 - DDA3937_RS00305 0.83 -0.2 72,410 + DDA3937_RS00305 0.83 -2.0 72,410 + DDA3937_RS00305 0.83 -0.7 72,411 - DDA3937_RS00305 0.83 -0.5 72,411 - DDA3937_RS00305 0.83 -0.1 72,411 - DDA3937_RS00305 0.83 -2.2 72,411 - DDA3937_RS00305 0.83 -0.1 72,411 - DDA3937_RS00305 0.83 -0.3 72,411 - DDA3937_RS00305 0.83 +0.4 72,414 + DDA3937_RS00305 0.83 -0.3 72,414 + DDA3937_RS00305 0.83 +2.2 72,537 - +2.3 72,686 + DDA3937_RS00310 0.12 +0.3 72,686 + DDA3937_RS00310 0.12 -2.2 72,686 + DDA3937_RS00310 0.12 -4.0 72,686 + DDA3937_RS00310 0.12 -1.0 72,737 + DDA3937_RS00310 0.17 -0.0 72,737 + DDA3937_RS00310 0.17 +0.3 72,911 + DDA3937_RS00310 0.33 -0.8 72,911 + DDA3937_RS00310 0.33 +2.2 72,912 - DDA3937_RS00310 0.33 -1.2 72,912 - DDA3937_RS00310 0.33 -1.2 73,055 + DDA3937_RS00310 0.47 -1.3 73,055 + DDA3937_RS00310 0.47 +0.2 73,055 + DDA3937_RS00310 0.47 -1.3 73,055 + DDA3937_RS00310 0.47 +2.0 73,055 + DDA3937_RS00310 0.47 +0.3 73,056 - DDA3937_RS00310 0.47 +1.7 73,056 - DDA3937_RS00310 0.47 +4.1 73,098 + DDA3937_RS00310 0.51 -0.3 73,098 + DDA3937_RS00310 0.51 +0.3 73,098 + DDA3937_RS00310 0.51 -0.1 73,099 - DDA3937_RS00310 0.51 +3.0 73,099 - DDA3937_RS00310 0.51 -0.1 73,099 - DDA3937_RS00310 0.51 +0.2 73,099 - DDA3937_RS00310 0.51 -0.3 73,157 - DDA3937_RS00310 0.57 -0.3 73,157 - DDA3937_RS00310 0.57 +0.1 73,363 + DDA3937_RS00310 0.76 -0.5 73,363 + DDA3937_RS00310 0.76 +1.6 73,406 + -0.0 73,406 + DDA3937_RS00310 0.81 +0.7 73,406 + DDA3937_RS00310 0.81 +0.3 73,460 + DDA3937_RS00310 0.86 -2.9 73,529 + -0.0 73,529 + -0.8 73,529 + +0.6 73,529 + -0.4 73,529 + -2.0 73,529 + +0.0 73,529 + +0.2 73,529 + -0.4 73,530 - -1.0 73,530 - -0.5 73,530 - -0.5 73,530 - +1.1 73,530 - +0.3 73,530 - -0.6 73,530 - -0.4 73,530 - +0.3 73,553 + +0.6 73,554 - -1.0 73,554 - -0.1 73,560 + -0.2 73,601 - -1.8 73,601 - +0.4 73,627 + +0.6 73,628 - +0.5 73,628 - -1.0 73,628 - -0.5 73,770 + DDA3937_RS00315 0.14 -0.8 73,770 + DDA3937_RS00315 0.14 +1.0 73,770 + DDA3937_RS00315 0.14 -0.4 73,770 + +0.6 73,770 + DDA3937_RS00315 0.14 -0.8 73,770 + DDA3937_RS00315 0.14 -2.5 73,770 + DDA3937_RS00315 0.14 -0.3 73,771 - DDA3937_RS00315 0.14 -3.2 73,771 - DDA3937_RS00315 0.14 +0.4 73,771 - DDA3937_RS00315 0.14 +0.2 73,863 + DDA3937_RS00315 0.23 -0.9 73,890 + DDA3937_RS00315 0.25 +1.0 73,890 + DDA3937_RS00315 0.25 +0.4 73,975 + DDA3937_RS00315 0.33 -0.4 74,120 + DDA3937_RS00315 0.46 +0.6 74,225 + DDA3937_RS00315 0.55 +0.4 74,225 + +2.0 74,225 + DDA3937_RS00315 0.55 -0.0 74,225 + DDA3937_RS00315 0.55 +0.2 74,225 + DDA3937_RS00315 0.55 +1.0 74,225 + DDA3937_RS00315 0.55 -0.3 74,225 + DDA3937_RS00315 0.55 -1.0 74,225 + DDA3937_RS00315 0.55 +1.0 74,225 + DDA3937_RS00315 0.55 +0.4 74,226 - DDA3937_RS00315 0.55 +0.7 74,226 - DDA3937_RS00315 0.55 -0.9 74,226 - DDA3937_RS00315 0.55 +0.6 74,231 + DDA3937_RS00315 0.56 +0.3 74,277 + DDA3937_RS00315 0.60 -0.5 74,295 - DDA3937_RS00315 0.62 -0.1 74,380 + DDA3937_RS00315 0.69 +1.0 74,380 + +0.6 74,380 + DDA3937_RS00315 0.69 -1.1 74,380 + DDA3937_RS00315 0.69 +0.7 74,381 - DDA3937_RS00315 0.69 -0.7 74,381 - DDA3937_RS00315 0.69 -1.1 74,404 - DDA3937_RS00315 0.72 +0.1 74,581 - DDA3937_RS00315 0.88 -2.1 74,581 - DDA3937_RS00315 0.88 +1.1 74,581 - DDA3937_RS00315 0.88 -0.8
Or see this region's nucleotide sequence