Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20935

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,757,797	+		DDA3937_RS20930	0.45	-1.3
4,757,798	-		DDA3937_RS20930	0.45	-0.8
4,757,798	-		DDA3937_RS20930	0.45	-0.6
4,757,866	+		DDA3937_RS20930	0.52	-0.8
4,757,867	-		DDA3937_RS20930	0.52	-0.8
4,757,867	-		DDA3937_RS20930	0.52	-0.9
4,757,925	+		DDA3937_RS20930	0.58	-0.8
4,757,925	+		DDA3937_RS20930	0.58	-0.7
4,757,925	+		DDA3937_RS20930	0.58	+0.1
4,757,926	-		DDA3937_RS20930	0.58	-1.3
4,757,957	-		DDA3937_RS20930	0.61	-0.3
4,757,992	+		DDA3937_RS20930	0.65	+1.0
4,757,992	+		DDA3937_RS20930	0.65	-1.5
4,757,992	+		DDA3937_RS20930	0.65	+0.1
4,757,993	-		DDA3937_RS20930	0.65	+0.8
4,757,995	-		DDA3937_RS20930	0.65	-1.5
4,757,999	-		DDA3937_RS20930	0.66	-0.1
4,758,015	-		DDA3937_RS20930	0.67	+1.6
4,758,015	-		DDA3937_RS20930	0.67	-0.3
4,758,129	-		DDA3937_RS20930	0.79	+0.3
4,758,205	+		DDA3937_RS20930	0.86	-0.0
4,758,205	+		DDA3937_RS20930	0.86	+0.5
4,758,320	+				+1.2
4,758,320	+				+0.4
4,758,320	+				-1.6
4,758,321	-				-1.3
4,758,321	-				-0.7
4,758,323	+				-0.2
4,758,323	+				+1.0
4,758,323	+				-0.0
4,758,323	+				-0.5
4,758,324	-				-1.1
4,758,324	-				+1.0
4,758,324	-				-0.1
4,758,324	-				+3.1
4,758,324	-				+0.3
4,758,343	+				+0.3
4,758,344	-				-0.1
4,758,344	-				-0.7
4,758,357	+				+0.4
4,758,359	+				+0.5
4,758,359	+				-0.9
4,758,360	-				-0.8
4,758,391	-				-0.9
4,758,396	+				+0.1
4,758,396	+				+3.8
4,758,397	-				-0.8
4,758,475	+				+0.3
4,758,476	-				-1.6
4,758,476	-				+1.3
4,758,621	+				-0.5
4,758,626	+				+0.6
4,758,626	+				-0.9
4,758,627	-				-2.6
4,758,656	-				-1.3
4,758,702	+				-0.6
4,758,702	+				-0.8
4,758,702	+				-2.2
4,758,702	+				-1.1
4,758,716	+				-1.1
4,758,717	-				-0.8
4,758,717	-				-1.3
4,758,785	+				-0.5
4,758,785	+				-1.2
4,758,785	+				+2.3
4,758,785	+				+0.9
4,758,785	+				-0.1
4,758,785	+				+1.1
4,758,801	+				-0.8
4,758,801	+				+0.7
4,758,802	-				+1.9
4,758,802	-				-0.1
4,758,802	-				-0.8
4,758,880	+		DDA3937_RS20935	0.13	-0.7
4,758,881	-		DDA3937_RS20935	0.13	-0.1
4,758,881	-		DDA3937_RS20935	0.13	-1.8
4,758,881	-		DDA3937_RS20935	0.13	+1.0
4,758,881	-		DDA3937_RS20935	0.13	+0.2
4,758,995	+		DDA3937_RS20935	0.22	-0.5
4,758,995	+		DDA3937_RS20935	0.22	+0.4
4,758,996	-		DDA3937_RS20935	0.22	-0.7
4,758,998	+		DDA3937_RS20935	0.22	-0.4
4,758,998	+		DDA3937_RS20935	0.22	-1.0
4,758,998	+		DDA3937_RS20935	0.22	-0.4
4,758,998	+		DDA3937_RS20935	0.22	+0.1
4,758,999	-				+1.3
4,758,999	-		DDA3937_RS20935	0.22	-0.1
4,759,049	+		DDA3937_RS20935	0.26	-0.3
4,759,049	+		DDA3937_RS20935	0.26	-0.3
4,759,049	+		DDA3937_RS20935	0.26	-1.3
4,759,050	-		DDA3937_RS20935	0.26	+0.3
4,759,050	-		DDA3937_RS20935	0.26	-0.4
4,759,259	+		DDA3937_RS20935	0.42	-0.5
4,759,259	+		DDA3937_RS20935	0.42	-0.4
4,759,259	+		DDA3937_RS20935	0.42	-1.1
4,759,260	-		DDA3937_RS20935	0.42	-0.0
4,759,260	-		DDA3937_RS20935	0.42	+1.5
4,759,260	-		DDA3937_RS20935	0.42	-1.0
4,759,260	-		DDA3937_RS20935	0.42	-0.9
4,759,260	-		DDA3937_RS20935	0.42	-1.1
4,759,260	-		DDA3937_RS20935	0.42	-1.2
4,759,286	+		DDA3937_RS20935	0.44	+0.4
4,759,369	+		DDA3937_RS20935	0.50	-0.1
4,759,369	+		DDA3937_RS20935	0.50	-2.1
4,759,369	+		DDA3937_RS20935	0.50	-1.5
4,759,370	-		DDA3937_RS20935	0.50	-0.1
4,759,370	-		DDA3937_RS20935	0.50	-0.7
4,759,370	-		DDA3937_RS20935	0.50	+0.6
4,759,370	-		DDA3937_RS20935	0.50	+0.0
4,759,370	-		DDA3937_RS20935	0.50	-0.2
4,759,370	-		DDA3937_RS20935	0.50	-1.2
4,759,370	-				+0.7
4,759,433	+				+3.1
4,759,434	-		DDA3937_RS20935	0.55	-1.3
4,759,439	+		DDA3937_RS20935	0.55	+0.6
4,759,440	-		DDA3937_RS20935	0.56	-1.2
4,759,440	-		DDA3937_RS20935	0.56	-0.6
4,759,440	-		DDA3937_RS20935	0.56	+0.3
4,759,494	+		DDA3937_RS20935	0.60	-0.2
4,759,495	-		DDA3937_RS20935	0.60	+0.4
4,759,537	+		DDA3937_RS20935	0.63	-0.2
4,759,537	+		DDA3937_RS20935	0.63	-2.0
4,759,537	+		DDA3937_RS20935	0.63	+0.1
4,759,537	+		DDA3937_RS20935	0.63	+0.9
4,759,538	-		DDA3937_RS20935	0.63	-0.7
4,759,538	-		DDA3937_RS20935	0.63	+0.2
4,759,538	-		DDA3937_RS20935	0.63	-1.9
4,759,538	-		DDA3937_RS20935	0.63	-0.1
4,759,538	-		DDA3937_RS20935	0.63	+0.9
4,759,538	-		DDA3937_RS20935	0.63	-0.1
4,759,538	-		DDA3937_RS20935	0.63	-0.4
4,759,538	-		DDA3937_RS20935	0.63	-2.3
4,759,538	-		DDA3937_RS20935	0.63	-0.8
4,759,538	-		DDA3937_RS20935	0.63	-0.4
4,759,673	+		DDA3937_RS20935	0.73	-1.3
4,759,673	+		DDA3937_RS20935	0.73	-0.1
4,759,673	+		DDA3937_RS20935	0.73	-0.7
4,759,673	+		DDA3937_RS20935	0.73	-0.3
4,759,755	-		DDA3937_RS20935	0.79	-1.3
4,759,775	-		DDA3937_RS20935	0.81	+0.1
4,760,034	+				-0.2
4,760,097	+				+1.7
4,760,097	+				+0.1
4,760,097	+				+0.2
4,760,098	-				-0.7
4,760,098	-				+0.6
4,760,098	-				+1.3
4,760,098	-				+0.2
4,760,098	-				+0.3
4,760,098	-				-0.9
4,760,115	+				-0.2
4,760,115	+				-2.6
4,760,115	+				+3.5
4,760,115	+				+1.1
4,760,116	-				+0.1
4,760,116	-				-0.5
4,760,124	+				-0.0
4,760,125	-				-1.7
4,760,125	-				+0.1
4,760,125	-				-0.2
4,760,135	-				+0.1
4,760,163	+				+0.8
4,760,164	-				+0.8
4,760,167	+				-1.1
4,760,167	+				-0.9
4,760,167	+				-1.5
4,760,167	+				-1.7
4,760,167	+				+0.5
4,760,168	-				+1.6
4,760,168	-				-1.0
4,760,168	-				+0.2
4,760,168	-				+2.3
4,760,168	-				-0.9
4,760,168	-				-1.6
4,760,168	-				+1.9
4,760,168	-				-0.4
4,760,210	+				-0.1
4,760,211	-				-0.3
4,760,211	-				+0.1
4,760,211	-				+1.1
4,760,827	-		DDA3937_RS20940	0.45	-1.8
4,760,893	+		DDA3937_RS20940	0.50	-0.3
4,760,894	-		DDA3937_RS20940	0.50	-0.6
4,760,894	-		DDA3937_RS20940	0.50	+0.7
4,760,894	-		DDA3937_RS20940	0.50	-2.2
4,760,894	-		DDA3937_RS20940	0.50	-0.6
4,760,936	+		DDA3937_RS20940	0.53	-1.4
4,760,936	+		DDA3937_RS20940	0.53	+0.2
4,760,937	-		DDA3937_RS20940	0.53	+0.9
4,760,937	-		DDA3937_RS20940	0.53	-1.8
4,760,937	-		DDA3937_RS20940	0.53	+0.1
4,760,938	+		DDA3937_RS20940	0.53	+0.5
4,760,938	+		DDA3937_RS20940	0.53	-1.9
4,760,938	+				-1.3
4,760,938	+		DDA3937_RS20940	0.53	-0.4
4,760,938	+		DDA3937_RS20940	0.53	-0.0
4,760,939	-		DDA3937_RS20940	0.53	-0.3
4,760,939	-		DDA3937_RS20940	0.53	+0.3
4,760,939	-		DDA3937_RS20940	0.53	-2.2