Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20665

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,698,219	+		DDA3937_RS20650	0.69	-1.0
4,698,219	+		DDA3937_RS20650	0.69	+3.3
4,698,253	+		DDA3937_RS20650	0.80	-0.3
4,698,254	-		DDA3937_RS20650	0.80	-1.3
4,698,254	-		DDA3937_RS20650	0.80	-0.1
4,698,254	-		DDA3937_RS20650	0.80	-1.6
4,698,254	-		DDA3937_RS20650	0.80	-1.0
4,698,254	-		DDA3937_RS20650	0.80	-0.1
4,698,311	+				-0.8
4,698,311	+				+0.9
4,698,358	+				+0.2
4,698,358	+				-0.5
4,698,398	+		DDA3937_RS20655	0.22	-1.2
4,698,399	-		DDA3937_RS20655	0.23	+0.6
4,698,401	+		DDA3937_RS20655	0.24	-0.1
4,698,402	-		DDA3937_RS20655	0.24	-0.4
4,698,402	-		DDA3937_RS20655	0.24	+0.4
4,698,416	-		DDA3937_RS20655	0.29	-0.5
4,698,543	+		DDA3937_RS20655	0.79	+0.7
4,698,543	+		DDA3937_RS20655	0.79	-0.1
4,698,543	+		DDA3937_RS20655	0.79	-0.8
4,698,544	-		DDA3937_RS20655	0.79	+2.0
4,698,544	-		DDA3937_RS20655	0.79	+0.1
4,698,544	-		DDA3937_RS20655	0.79	+1.7
4,698,544	-		DDA3937_RS20655	0.79	-0.9
4,698,608	-				+0.4
4,698,608	-				-1.4
4,698,608	-				+1.3
4,698,739	+		DDA3937_RS20660	0.14	+1.3
4,698,914	+		DDA3937_RS20660	0.68	-0.6
4,698,914	+		DDA3937_RS20660	0.68	-1.2
4,698,949	-		DDA3937_RS20660	0.79	+0.8
4,698,949	-		DDA3937_RS20660	0.79	-0.8
4,698,997	-				-1.0
4,699,014	-				-3.4
4,699,014	-				-0.7
4,699,017	-				+1.5
4,699,051	+				-1.3
4,699,051	+				-0.5
4,699,051	+				-1.0
4,699,051	+				-0.3
4,699,051	+				-1.1
4,699,051	+				+0.7
4,699,052	-				+1.1
4,699,052	-				-0.1
4,699,052	-				-1.6
4,699,063	+				-1.3
4,699,063	+				-0.0
4,699,063	+				-0.2
4,699,063	+				-0.2
4,699,063	+				+1.7
4,699,063	+				+0.3
4,699,064	-				-0.0
4,699,064	-				+0.0
4,699,064	-				-0.9
4,699,073	+				-0.3
4,699,074	-				-2.3
4,699,074	-				+0.4
4,699,119	-				-0.9
4,699,119	-				-0.6
4,699,122	+				-0.0
4,699,122	+				-1.7
4,699,123	-				-1.4
4,699,123	-				+0.5
4,699,123	-				+1.1
4,699,130	-				-1.0
4,699,130	-				-1.4
4,699,210	-				-0.9
4,699,210	-				+1.7
4,699,210	-				-0.4
4,699,246	+				-0.3
4,699,353	+				+2.3
4,699,354	-				-0.7
4,699,370	+				-2.9
4,699,413	+				-1.4
4,699,414	-				-1.5
4,699,449	+		DDA3937_RS20665	0.10	-1.1
4,699,449	+		DDA3937_RS20665	0.10	+0.6
4,699,456	+		DDA3937_RS20665	0.11	-1.2
4,699,480	+		DDA3937_RS20665	0.12	-0.2
4,699,481	-		DDA3937_RS20665	0.12	-1.0
4,699,481	-		DDA3937_RS20665	0.12	-0.0
4,699,527	+		DDA3937_RS20665	0.14	-2.1
4,699,527	+		DDA3937_RS20665	0.14	-0.7
4,699,576	+		DDA3937_RS20665	0.16	-0.7
4,699,577	-		DDA3937_RS20665	0.16	+1.1
4,699,577	-		DDA3937_RS20665	0.16	-0.9
4,699,578	+		DDA3937_RS20665	0.16	+0.1
4,699,579	-		DDA3937_RS20665	0.16	+0.3
4,699,579	-		DDA3937_RS20665	0.16	-0.0
4,699,579	-		DDA3937_RS20665	0.16	+0.6
4,699,579	-		DDA3937_RS20665	0.16	+1.8
4,699,604	-		DDA3937_RS20665	0.17	-0.2
4,699,647	+		DDA3937_RS20665	0.19	+0.3
4,699,647	+		DDA3937_RS20665	0.19	-0.4
4,699,648	-		DDA3937_RS20665	0.19	+0.4
4,699,666	+		DDA3937_RS20665	0.19	-0.2
4,699,667	-		DDA3937_RS20665	0.19	-0.7
4,699,667	-		DDA3937_RS20665	0.19	-1.6
4,699,714	-		DDA3937_RS20665	0.21	-0.9
4,699,736	+		DDA3937_RS20665	0.22	+0.0
4,699,737	-		DDA3937_RS20665	0.22	-1.6
4,699,737	-		DDA3937_RS20665	0.22	-0.1
4,699,770	-		DDA3937_RS20665	0.24	-2.1
4,699,782	+		DDA3937_RS20665	0.24	-0.7
4,699,782	+				-0.7
4,699,782	+		DDA3937_RS20665	0.24	+0.1
4,699,782	+		DDA3937_RS20665	0.24	-0.2
4,699,783	-		DDA3937_RS20665	0.24	-0.9
4,699,783	-		DDA3937_RS20665	0.24	-0.2
4,699,783	-		DDA3937_RS20665	0.24	+2.0
4,699,786	-		DDA3937_RS20665	0.24	-0.6
4,699,863	+		DDA3937_RS20665	0.28	-1.3
4,699,940	-		DDA3937_RS20665	0.31	-2.1
4,699,940	-		DDA3937_RS20665	0.31	+0.1
4,700,013	+		DDA3937_RS20665	0.34	-0.5
4,700,095	-		DDA3937_RS20665	0.37	-0.7
4,700,171	+		DDA3937_RS20665	0.41	-0.2
4,700,174	-				-0.3
4,700,279	+		DDA3937_RS20665	0.45	-0.7
4,700,293	-		DDA3937_RS20665	0.46	-0.3
4,700,319	+		DDA3937_RS20665	0.47	-0.9
4,700,319	+		DDA3937_RS20665	0.47	-0.2
4,700,320	-		DDA3937_RS20665	0.47	-2.1
4,700,328	+		DDA3937_RS20665	0.47	-0.6
4,700,366	+		DDA3937_RS20665	0.49	-0.7
4,700,367	-		DDA3937_RS20665	0.49	+0.3
4,700,367	-		DDA3937_RS20665	0.49	-2.0
4,700,370	+		DDA3937_RS20665	0.49	-1.2
4,700,370	+		DDA3937_RS20665	0.49	-0.1
4,700,370	+		DDA3937_RS20665	0.49	-2.0
4,700,371	-		DDA3937_RS20665	0.49	-0.5
4,700,382	+		DDA3937_RS20665	0.50	-1.1
4,700,519	-		DDA3937_RS20665	0.55	-0.0
4,700,598	+		DDA3937_RS20665	0.59	-0.0
4,700,598	+		DDA3937_RS20665	0.59	-1.4
4,700,629	-		DDA3937_RS20665	0.60	-2.1
4,700,698	-		DDA3937_RS20665	0.63	+0.4
4,700,718	+		DDA3937_RS20665	0.64	-0.6
4,700,750	-		DDA3937_RS20665	0.65	+0.1
4,700,854	-		DDA3937_RS20665	0.69	-1.0
4,700,945	-		DDA3937_RS20665	0.73	-0.3
4,701,093	+		DDA3937_RS20665	0.79	-0.4
4,701,205	+		DDA3937_RS20665	0.84	-1.1
4,701,304	+		DDA3937_RS20665	0.88	-1.7
4,701,497	+				+0.1
4,701,544	+				-0.1
4,701,751	+		DDA3937_RS20675	0.36	+1.3
4,701,751	+		DDA3937_RS20675	0.36	+0.1
4,701,759	+		DDA3937_RS20675	0.38	-1.0
4,701,887	-		DDA3937_RS20675	0.65	-1.2
4,702,062	-				-1.7
4,702,104	-				-0.8
4,702,106	+				-3.3
4,702,106	+				-2.4
4,702,152	-				-2.3
4,702,152	-				+1.6
4,702,205	-		DDA3937_RS20680	0.11	+0.1
4,702,228	+		DDA3937_RS20680	0.14	-0.8
4,702,228	+		DDA3937_RS20680	0.14	+0.5
4,702,258	-		DDA3937_RS20680	0.18	-0.3
4,702,307	-		DDA3937_RS20680	0.24	-0.5
4,702,320	-		DDA3937_RS20680	0.26	-0.4
4,702,335	-		DDA3937_RS20680	0.28	+0.5
4,702,419	-		DDA3937_RS20680	0.40	+0.2
4,702,471	-		DDA3937_RS20680	0.47	-0.9
4,702,501	-		DDA3937_RS20680	0.51	-1.0
4,702,568	+		DDA3937_RS20680	0.60	-0.8