Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20155

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,592,133	+		DDA3937_RS20150	0.37	-1.1
4,592,134	-		DDA3937_RS20150	0.37	-2.1
4,592,134	-		DDA3937_RS20150	0.37	+0.6
4,592,134	-		DDA3937_RS20150	0.37	-3.6
4,592,134	-		DDA3937_RS20150	0.37	-2.0
4,592,134	-		DDA3937_RS20150	0.37	-1.7
4,592,134	-		DDA3937_RS20150	0.37	-1.5
4,592,134	-		DDA3937_RS20150	0.37	-1.9
4,592,173	+		DDA3937_RS20150	0.39	-3.1
4,592,173	+		DDA3937_RS20150	0.39	-0.2
4,592,174	-		DDA3937_RS20150	0.39	-3.0
4,592,198	-		DDA3937_RS20150	0.41	-3.2
4,592,198	-		DDA3937_RS20150	0.41	+1.3
4,592,214	+		DDA3937_RS20150	0.42	-0.7
4,592,214	+		DDA3937_RS20150	0.42	-1.5
4,592,214	+		DDA3937_RS20150	0.42	-1.0
4,592,337	+		DDA3937_RS20150	0.50	+0.3
4,592,718	+		DDA3937_RS20150	0.75	-1.2
4,592,720	+		DDA3937_RS20150	0.75	-3.0
4,592,720	+		DDA3937_RS20150	0.75	-0.5
4,592,721	-		DDA3937_RS20150	0.75	-1.7
4,592,721	-		DDA3937_RS20150	0.75	-0.2
4,593,064	-				-2.3
4,593,102	-				+0.1
4,593,102	-				-1.8
4,593,166	-				-2.5
4,593,581	-		DDA3937_RS20155	0.25	-0.2
4,593,581	-		DDA3937_RS20155	0.25	-0.3
4,593,581	-		DDA3937_RS20155	0.25	-3.9
4,593,602	+		DDA3937_RS20155	0.26	-1.2
4,593,602	+		DDA3937_RS20155	0.26	-3.2
4,593,603	-		DDA3937_RS20155	0.26	-3.5
4,593,603	-		DDA3937_RS20155	0.26	-4.4
4,593,603	-		DDA3937_RS20155	0.26	+1.8
4,593,603	-		DDA3937_RS20155	0.26	-3.5
4,593,603	-		DDA3937_RS20155	0.26	-2.5
4,593,603	-		DDA3937_RS20155	0.26	-2.2
4,593,603	-		DDA3937_RS20155	0.26	-2.6
4,593,689	+		DDA3937_RS20155	0.31	-3.5
4,593,719	+		DDA3937_RS20155	0.33	-0.8
4,593,875	+		DDA3937_RS20155	0.41	-0.0
4,593,876	-		DDA3937_RS20155	0.41	-1.2
4,593,876	-		DDA3937_RS20155	0.41	-1.5
4,593,910	+		DDA3937_RS20155	0.43	-2.4
4,593,911	-		DDA3937_RS20155	0.43	-3.8
4,594,004	+		DDA3937_RS20155	0.48	-2.7
4,594,004	+		DDA3937_RS20155	0.48	-2.9
4,594,004	+		DDA3937_RS20155	0.48	-0.4
4,594,005	-		DDA3937_RS20155	0.48	-2.7
4,594,005	-		DDA3937_RS20155	0.48	-0.7
4,594,005	-		DDA3937_RS20155	0.48	-0.0
4,594,226	+		DDA3937_RS20155	0.60	-0.1
4,594,226	+		DDA3937_RS20155	0.60	-2.4
4,594,226	+		DDA3937_RS20155	0.60	-2.4
4,594,226	+		DDA3937_RS20155	0.60	-2.4
4,594,226	+		DDA3937_RS20155	0.60	+0.6
4,594,226	+		DDA3937_RS20155	0.60	-2.2
4,594,226	+		DDA3937_RS20155	0.60	-0.0
4,594,227	-		DDA3937_RS20155	0.60	-2.2
4,594,227	-		DDA3937_RS20155	0.60	-0.7
4,594,230	-		DDA3937_RS20155	0.60	-0.3
4,594,611	+		DDA3937_RS20155	0.81	-3.0
4,594,612	-		DDA3937_RS20155	0.81	-2.7
4,594,612	-		DDA3937_RS20155	0.81	-2.6
4,594,649	+		DDA3937_RS20155	0.83	-1.5
4,594,649	+		DDA3937_RS20155	0.83	-3.2
4,594,649	+		DDA3937_RS20155	0.83	-1.5
4,594,649	+		DDA3937_RS20155	0.83	-0.4
4,594,649	+		DDA3937_RS20155	0.83	-2.0
4,594,650	-		DDA3937_RS20155	0.83	-1.5
4,594,650	-		DDA3937_RS20155	0.83	-3.4
4,594,650	-		DDA3937_RS20155	0.83	-0.3
4,594,650	-		DDA3937_RS20155	0.83	-1.5
4,594,650	-		DDA3937_RS20155	0.83	-1.0
4,594,692	-		DDA3937_RS20155	0.85	+0.1
4,594,692	-		DDA3937_RS20155	0.85	-1.9
4,594,692	-				-0.7
4,594,692	-		DDA3937_RS20155	0.85	-1.0
4,594,698	+		DDA3937_RS20155	0.86	-2.9
4,594,698	+				+0.3
4,594,699	-		DDA3937_RS20155	0.86	-1.5
4,594,699	-		DDA3937_RS20155	0.86	-2.9
4,594,740	+		DDA3937_RS20155	0.88	-2.7
4,594,743	+		DDA3937_RS20155	0.88	-1.5
4,594,743	+		DDA3937_RS20155	0.88	-2.0
4,594,744	-		DDA3937_RS20155	0.88	-0.3
4,594,825	+				-3.0
4,594,923	+				-1.7
4,594,926	+				-1.9
4,594,926	+				-0.6
4,594,926	+				-2.1
4,594,927	-				-2.8
4,594,927	-				+0.8
4,594,927	-				-1.4
4,594,955	+				-1.9
4,594,955	+				+0.7
4,594,955	+				-1.1
4,594,955	+				-0.7
4,594,956	-				-1.6
4,594,956	-				-2.5
4,594,959	+				-2.1
4,594,959	+				-1.6
4,594,959	+				-2.9
4,594,959	+				+0.1
4,594,959	+				-1.3
4,594,959	+				-2.6
4,594,959	+				+1.0
4,594,959	+				-1.3
4,594,960	-				-2.0
4,594,960	-				-4.0
4,594,960	-				-2.7
4,594,960	-				-0.3
4,594,965	+				-2.9
4,594,965	+				-1.0
4,594,965	+				-1.5
4,594,965	+				-1.7
4,594,965	+				-1.3
4,594,975	-				-4.4
4,594,985	-				+0.2
4,595,114	+				+0.5
4,595,114	+				+0.0
4,595,115	-				-0.2
4,595,226	+		DDA3937_RS20160	0.20	-3.4
4,595,309	-		DDA3937_RS20160	0.29	-0.8
4,595,309	-		DDA3937_RS20160	0.29	-0.7
4,595,309	-		DDA3937_RS20160	0.29	+0.2
4,595,360	+		DDA3937_RS20160	0.35	-1.7
4,595,397	+		DDA3937_RS20160	0.39	-2.1
4,595,398	-		DDA3937_RS20160	0.39	-0.1
4,595,398	-		DDA3937_RS20160	0.39	-0.7
4,595,398	-		DDA3937_RS20160	0.39	+0.1
4,595,475	+		DDA3937_RS20160	0.47	-2.1
4,595,475	+		DDA3937_RS20160	0.47	-3.7
4,595,475	+		DDA3937_RS20160	0.47	-2.8
4,595,475	+		DDA3937_RS20160	0.47	-2.5
4,595,475	+		DDA3937_RS20160	0.47	-0.9
4,595,475	+		DDA3937_RS20160	0.47	-1.8
4,595,475	+		DDA3937_RS20160	0.47	-1.4
4,595,476	-		DDA3937_RS20160	0.47	-1.3
4,595,476	-		DDA3937_RS20160	0.47	+0.5
4,595,476	-		DDA3937_RS20160	0.47	-2.5
4,595,476	-		DDA3937_RS20160	0.47	-1.0
4,595,476	-		DDA3937_RS20160	0.47	-0.3
4,595,480	-		DDA3937_RS20160	0.48	-1.8
4,595,491	+		DDA3937_RS20160	0.49	-0.7
4,595,510	-		DDA3937_RS20160	0.51	-0.1
4,595,510	-		DDA3937_RS20160	0.51	+0.7
4,595,580	+		DDA3937_RS20160	0.58	-2.8
4,595,580	+		DDA3937_RS20160	0.58	-1.9
4,595,580	+		DDA3937_RS20160	0.58	-1.9
4,595,581	-		DDA3937_RS20160	0.58	-0.0
4,595,621	-		DDA3937_RS20160	0.63	+1.2
4,595,622	+		DDA3937_RS20160	0.63	+0.6
4,595,623	-		DDA3937_RS20160	0.63	-0.4
4,595,651	+		DDA3937_RS20160	0.66	-2.7
4,595,651	+		DDA3937_RS20160	0.66	-1.0
4,595,651	+		DDA3937_RS20160	0.66	-1.3
4,595,651	+		DDA3937_RS20160	0.66	-2.9
4,595,651	+		DDA3937_RS20160	0.66	-3.6
4,595,651	+		DDA3937_RS20160	0.66	-2.5
4,595,651	+		DDA3937_RS20160	0.66	-1.1
4,595,652	-		DDA3937_RS20160	0.66	+0.2
4,595,652	-		DDA3937_RS20160	0.66	-0.7
4,595,652	-		DDA3937_RS20160	0.66	-1.2
4,595,652	-		DDA3937_RS20160	0.66	+0.5
4,595,652	-		DDA3937_RS20160	0.66	-0.9
4,595,652	-		DDA3937_RS20160	0.66	-1.2
4,595,652	-		DDA3937_RS20160	0.66	-1.7
4,595,652	-		DDA3937_RS20160	0.66	+0.0
4,595,652	-		DDA3937_RS20160	0.66	-0.0
4,595,652	-		DDA3937_RS20160	0.66	-0.7
4,595,666	+		DDA3937_RS20160	0.68	-1.9
4,595,666	+		DDA3937_RS20160	0.68	-2.1
4,595,666	+		DDA3937_RS20160	0.68	-1.2
4,595,680	+		DDA3937_RS20160	0.69	-2.5
4,595,680	+		DDA3937_RS20160	0.69	+1.4
4,595,682	+		DDA3937_RS20160	0.69	-2.2
4,595,682	+		DDA3937_RS20160	0.69	-1.7
4,595,683	-		DDA3937_RS20160	0.69	-0.1
4,595,683	-		DDA3937_RS20160	0.69	-1.3
4,595,749	-		DDA3937_RS20160	0.77	-0.6
4,595,761	+		DDA3937_RS20160	0.78	-1.0
4,595,761	+		DDA3937_RS20160	0.78	+1.0
4,595,761	+		DDA3937_RS20160	0.78	-1.4
4,595,761	+		DDA3937_RS20160	0.78	-0.2
4,595,761	+		DDA3937_RS20160	0.78	-1.1
4,595,762	-		DDA3937_RS20160	0.78	+0.2
4,595,762	-		DDA3937_RS20160	0.78	-0.7
4,595,839	+		DDA3937_RS20160	0.86	-3.3
4,595,840	-		DDA3937_RS20160	0.86	-3.1
4,595,840	-		DDA3937_RS20160	0.86	-0.6
4,595,840	-		DDA3937_RS20160	0.86	-0.9
4,595,840	-		DDA3937_RS20160	0.86	-1.2
4,595,840	-		DDA3937_RS20160	0.86	-0.0
4,595,840	-		DDA3937_RS20160	0.86	-0.1
4,595,841	+		DDA3937_RS20160	0.87	-3.9
4,595,842	-		DDA3937_RS20160	0.87	-0.6
4,595,842	-		DDA3937_RS20160	0.87	-0.9
4,595,842	-		DDA3937_RS20160	0.87	+0.3
4,595,944	+				-2.5
4,595,944	+				-2.1
4,595,945	-				+1.3
4,595,945	-				-0.8
4,595,945	-				-1.2
4,595,945	-				+0.3
4,595,945	-				+0.1
4,595,946	+				+0.4
4,595,946	+				-0.7
4,595,946	+				+1.3
4,595,946	+				-0.7
4,595,946	+				-0.1
4,595,946	+				-1.6
4,595,946	+				-2.8
4,595,947	-				+1.9
4,595,947	-				-2.0
4,595,947	-				-0.7
4,595,947	-				+0.3
4,595,947	-				-0.7
4,595,947	-				+0.5
4,595,947	-				-0.1
4,595,947	-				-0.3
4,595,947	-				-0.2
4,595,947	-				-0.8
4,595,947	-				-0.9