Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20050

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,561,242	+		DDA3937_RS20040	0.87	-0.5
4,561,242	+		DDA3937_RS20040	0.87	-0.5
4,561,242	+		DDA3937_RS20040	0.87	-0.0
4,561,243	-		DDA3937_RS20040	0.87	-0.6
4,561,243	-		DDA3937_RS20040	0.87	+0.4
4,561,262	-		DDA3937_RS20040	0.89	-1.9
4,561,262	-		DDA3937_RS20040	0.89	-0.4
4,561,340	+				+0.9
4,561,340	+				+0.9
4,561,340	+				-1.7
4,561,340	+				-1.5
4,561,341	-				-0.2
4,561,341	-				+1.0
4,561,341	-				-1.7
4,561,341	-				+1.3
4,561,341	-				-0.2
4,561,341	-				+0.9
4,561,341	-				-1.5
4,561,341	-				+1.8
4,561,341	-				-2.6
4,561,342	+				-0.0
4,561,342	+				+0.6
4,561,342	+				-0.0
4,561,343	-				-1.2
4,561,343	-				-0.3
4,561,343	-				+1.5
4,561,343	-				-1.5
4,561,343	-				-0.6
4,561,343	-				+1.4
4,561,343	-				-1.3
4,561,431	-				-0.0
4,561,444	+				-0.3
4,561,454	-				-0.9
4,561,490	-				-2.9
4,561,490	-				-0.7
4,561,735	+		DDA3937_RS20045	0.42	+0.9
4,561,735	+		DDA3937_RS20045	0.42	-1.7
4,561,735	+		DDA3937_RS20045	0.42	-0.7
4,561,735	+		DDA3937_RS20045	0.42	-0.3
4,561,736	-		DDA3937_RS20045	0.42	-0.7
4,561,736	-		DDA3937_RS20045	0.42	+1.0
4,561,736	-		DDA3937_RS20045	0.42	-2.0
4,561,736	-		DDA3937_RS20045	0.42	+0.1
4,561,736	-		DDA3937_RS20045	0.42	-0.9
4,561,763	-		DDA3937_RS20045	0.45	+0.1
4,561,854	-		DDA3937_RS20045	0.58	-0.4
4,561,919	+		DDA3937_RS20045	0.67	+1.9
4,562,014	-		DDA3937_RS20045	0.80	-2.9
4,562,020	+		DDA3937_RS20045	0.81	-0.1
4,562,020	+		DDA3937_RS20045	0.81	-0.5
4,562,021	-		DDA3937_RS20045	0.81	-1.5
4,562,084	+				-1.3
4,562,085	-				-0.5
4,562,153	+				-0.8
4,562,153	+				-1.4
4,562,153	+				-0.3
4,562,153	+				+1.3
4,562,153	+				-0.4
4,562,153	+				-0.4
4,562,153	+				+1.7
4,562,153	+				-0.7
4,562,154	-				+0.3
4,562,154	-				+0.1
4,562,154	-				+2.9
4,562,154	-				-0.5
4,562,154	-				-0.3
4,562,154	-				-0.1
4,562,154	-				-0.6
4,562,154	-				-1.1
4,562,154	-				+0.3
4,562,154	-				+0.5
4,562,154	-				-1.0
4,562,154	-				+0.6
4,562,154	-				-0.9
4,562,154	-				+0.3
4,562,154	-				+1.0
4,562,326	+				-0.3
4,562,327	-				-0.2
4,562,518	+		DDA3937_RS20050	0.25	+0.0
4,562,645	-		DDA3937_RS20050	0.35	+1.0
4,562,645	-		DDA3937_RS20050	0.35	-0.2
4,562,697	-		DDA3937_RS20050	0.39	-1.2
4,562,971	+		DDA3937_RS20050	0.61	-0.6
4,562,972	-		DDA3937_RS20050	0.61	-1.5
4,563,000	+		DDA3937_RS20050	0.63	-0.9
4,563,207	-		DDA3937_RS20050	0.79	+0.3
4,563,207	-		DDA3937_RS20050	0.79	-1.0
4,563,270	+		DDA3937_RS20050	0.84	+0.2
4,563,270	+		DDA3937_RS20050	0.84	-0.8
4,563,271	-		DDA3937_RS20050	0.85	-1.0
4,563,271	-		DDA3937_RS20050	0.85	-0.9
4,563,271	-		DDA3937_RS20050	0.85	-1.4
4,563,271	-		DDA3937_RS20050	0.85	+0.4
4,563,271	-		DDA3937_RS20050	0.85	-1.2
4,563,323	-		DDA3937_RS20050	0.89	+0.0
4,563,328	+		DDA3937_RS20050	0.89	-0.7
4,563,329	-		DDA3937_RS20050	0.89	+0.0
4,563,427	+				+1.1
4,563,427	+				-1.0
4,563,427	+				-2.0
4,563,429	+				-1.0
4,563,430	-				-1.9
4,563,430	-				-0.5
4,563,430	-				-0.3
4,563,542	+				-0.6
4,563,542	+				+1.3
4,563,542	+				-0.3
4,563,543	-				+0.7
4,563,543	-				-2.3
4,563,543	-				-0.4
4,563,557	+				-0.6
4,563,557	+				-0.6
4,563,558	-				-0.3
4,563,558	-				+1.0
4,563,777	-		DDA3937_RS20055	0.28	-0.9
4,563,777	-		DDA3937_RS20055	0.28	-0.3
4,563,777	-		DDA3937_RS20055	0.28	-1.2
4,563,777	-		DDA3937_RS20055	0.28	-0.3
4,563,777	-		DDA3937_RS20055	0.28	-0.7
4,563,777	-		DDA3937_RS20055	0.28	-0.5
4,563,777	-		DDA3937_RS20055	0.28	-3.9
4,563,822	+		DDA3937_RS20055	0.32	+0.7
4,563,822	+		DDA3937_RS20055	0.32	-2.9
4,563,822	+		DDA3937_RS20055	0.32	-2.3
4,563,841	+		DDA3937_RS20055	0.33	+1.3
4,563,841	+		DDA3937_RS20055	0.33	+0.1
4,563,842	-		DDA3937_RS20055	0.34	-0.9
4,563,842	-		DDA3937_RS20055	0.34	-0.7
4,563,842	-		DDA3937_RS20055	0.34	-0.7
4,563,842	-		DDA3937_RS20055	0.34	-0.6
4,563,860	-		DDA3937_RS20055	0.35	+0.7
4,563,866	+		DDA3937_RS20055	0.36	-1.0
4,564,002	-		DDA3937_RS20055	0.48	+0.3
4,564,063	+		DDA3937_RS20055	0.53	+0.6
4,564,063	+				+0.3
4,564,163	+		DDA3937_RS20055	0.62	-0.9
4,564,164	-		DDA3937_RS20055	0.62	-0.1
4,564,164	-		DDA3937_RS20055	0.62	-1.0
4,564,164	-		DDA3937_RS20055	0.62	-2.9
4,564,249	-		DDA3937_RS20055	0.69	-0.2
4,564,263	+		DDA3937_RS20055	0.71	-1.4
4,564,264	-		DDA3937_RS20055	0.71	-0.3
4,564,271	+		DDA3937_RS20055	0.71	-1.0
4,564,272	-		DDA3937_RS20055	0.72	+0.3
4,564,272	-		DDA3937_RS20055	0.72	+2.2
4,564,327	+		DDA3937_RS20055	0.76	+0.0
4,564,327	+		DDA3937_RS20055	0.76	-1.2
4,564,327	+		DDA3937_RS20055	0.76	-0.7
4,564,327	+		DDA3937_RS20055	0.76	+0.0
4,564,327	+		DDA3937_RS20055	0.76	-0.5
4,564,327	+		DDA3937_RS20055	0.76	-1.3
4,564,327	+		DDA3937_RS20055	0.76	-1.4
4,564,328	-		DDA3937_RS20055	0.76	+0.6
4,564,328	-		DDA3937_RS20055	0.76	+1.8
4,564,328	-		DDA3937_RS20055	0.76	-0.7
4,564,328	-		DDA3937_RS20055	0.76	+0.1
4,564,328	-		DDA3937_RS20055	0.76	-1.5
4,564,328	-		DDA3937_RS20055	0.76	-1.2
4,564,413	+		DDA3937_RS20055	0.84	+0.5
4,564,413	+		DDA3937_RS20055	0.84	-2.7
4,564,428	-		DDA3937_RS20055	0.85	+0.5