Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19345

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,398,619	-				+1.3
4,398,675	-				-1.0
4,398,675	-				+0.1
4,398,681	-				-1.7
4,398,688	-				-1.3
4,398,688	-				-2.8
4,398,688	-				-0.3
4,398,700	-				+1.3
4,398,759	-		DDA3937_RS19340	0.18	-1.5
4,398,958	-		DDA3937_RS19340	0.46	-0.4
4,398,958	-		DDA3937_RS19340	0.46	-1.3
4,398,958	-		DDA3937_RS19340	0.46	+1.1
4,399,028	-		DDA3937_RS19340	0.55	+0.4
4,399,052	+		DDA3937_RS19340	0.59	+0.1
4,399,257	-		DDA3937_RS19340	0.87	-1.6
4,399,333	-				+0.1
4,399,345	-				-1.9
4,399,377	-				+0.6
4,399,377	-				-0.2
4,399,377	-				+1.1
4,399,377	-				-2.3
4,399,377	-				+1.6
4,399,384	+				-0.3
4,399,385	-				-0.8
4,399,385	-				+1.3
4,399,397	-				+1.1
4,399,432	+				+0.1
4,399,433	-				+0.5
4,399,433	-				-1.0
4,399,463	+				+2.3
4,399,463	+				+0.2
4,399,463	+				-0.7
4,399,463	+				+0.2
4,399,464	-				-0.5
4,399,464	-				-0.1
4,399,464	-				-0.4
4,399,464	-				-1.6
4,399,474	+				-0.6
4,399,474	+				-3.0
4,399,475	-				-1.1
4,399,480	-				-1.5
4,399,489	-				-0.8
4,399,489	-				-1.0
4,399,489	-				-0.5
4,399,506	-				+0.5
4,399,506	-				+0.1
4,399,577	+				-0.9
4,399,577	+				+0.7
4,399,577	+				-0.3
4,399,577	+				+1.0
4,399,577	+				+1.4
4,399,578	-				-1.9
4,399,578	-				-0.6
4,399,578	-				-0.1
4,399,578	-				-1.4
4,399,581	+				+1.3
4,399,581	+				+0.1
4,399,582	-				-1.6
4,399,582	-				+1.3
4,399,582	-				-2.4
4,399,582	-				-0.3
4,399,582	-				-0.7
4,399,583	+				+2.9
4,399,583	+				-0.3
4,399,623	-				-0.2
4,399,629	+				-2.0
4,399,629	+				-1.2
4,399,630	-				-0.7
4,399,630	-				-0.1
4,399,664	+				+0.1
4,399,664	+				-0.1
4,399,664	+				-0.4
4,399,664	+				-0.1
4,399,665	-				-0.4
4,399,665	-				+0.6
4,399,665	-				+1.0
4,399,665	-				-1.8
4,399,665	-				-0.4
4,399,681	+				+0.4
4,399,681	+				+1.0
4,399,682	-				+0.8
4,399,702	+		DDA3937_RS19345	0.10	+0.9
4,399,703	-		DDA3937_RS19345	0.10	-0.2
4,399,806	+		DDA3937_RS19345	0.17	+0.1
4,399,806	+		DDA3937_RS19345	0.17	+0.5
4,399,806	+		DDA3937_RS19345	0.17	-1.1
4,399,806	+		DDA3937_RS19345	0.17	+0.6
4,399,807	-		DDA3937_RS19345	0.17	-0.5
4,399,807	-		DDA3937_RS19345	0.17	-0.1
4,399,807	-		DDA3937_RS19345	0.17	+0.6
4,399,807	-		DDA3937_RS19345	0.17	-1.8
4,399,821	+		DDA3937_RS19345	0.18	-0.9
4,399,821	+		DDA3937_RS19345	0.18	+0.8
4,399,822	-		DDA3937_RS19345	0.18	+0.3
4,399,822	-		DDA3937_RS19345	0.18	+0.4
4,399,822	-		DDA3937_RS19345	0.18	-0.6
4,399,822	-		DDA3937_RS19345	0.18	-3.3
4,399,822	-		DDA3937_RS19345	0.18	+0.5
4,399,822	-		DDA3937_RS19345	0.18	+0.8
4,399,841	+		DDA3937_RS19345	0.19	+0.9
4,399,841	+		DDA3937_RS19345	0.19	+0.3
4,399,841	+		DDA3937_RS19345	0.19	-2.4
4,399,841	+		DDA3937_RS19345	0.19	-0.4
4,399,842	-		DDA3937_RS19345	0.19	-3.8
4,399,842	-		DDA3937_RS19345	0.19	-0.2
4,399,906	-		DDA3937_RS19345	0.23	-1.5
4,399,906	-		DDA3937_RS19345	0.23	-0.3
4,399,961	+		DDA3937_RS19345	0.26	-0.5
4,399,962	-		DDA3937_RS19345	0.26	-0.4
4,400,061	+		DDA3937_RS19345	0.32	-1.6
4,400,061	+		DDA3937_RS19345	0.32	-1.3
4,400,061	+		DDA3937_RS19345	0.32	-1.9
4,400,062	-		DDA3937_RS19345	0.32	+2.0
4,400,090	+		DDA3937_RS19345	0.34	+0.5
4,400,090	+		DDA3937_RS19345	0.34	-0.0
4,400,090	+		DDA3937_RS19345	0.34	-1.9
4,400,091	-		DDA3937_RS19345	0.34	-0.7
4,400,091	-		DDA3937_RS19345	0.34	-0.4
4,400,093	+		DDA3937_RS19345	0.34	-0.9
4,400,094	-		DDA3937_RS19345	0.34	-0.6
4,400,126	+		DDA3937_RS19345	0.36	+0.2
4,400,126	+		DDA3937_RS19345	0.36	-0.3
4,400,129	+		DDA3937_RS19345	0.36	-0.2
4,400,129	+		DDA3937_RS19345	0.36	-0.6
4,400,148	+		DDA3937_RS19345	0.37	+0.3
4,400,149	-		DDA3937_RS19345	0.37	-0.7
4,400,152	-		DDA3937_RS19345	0.38	+0.2
4,400,152	-		DDA3937_RS19345	0.38	-0.2
4,400,152	-		DDA3937_RS19345	0.38	-0.9
4,400,346	+		DDA3937_RS19345	0.49	+0.4
4,400,346	+		DDA3937_RS19345	0.49	+0.8
4,400,347	-		DDA3937_RS19345	0.50	-2.4
4,400,399	+		DDA3937_RS19345	0.53	-0.4
4,400,399	+				-0.3
4,400,399	+		DDA3937_RS19345	0.53	-2.5
4,400,399	+		DDA3937_RS19345	0.53	-0.2
4,400,399	+		DDA3937_RS19345	0.53	-0.3
4,400,399	+		DDA3937_RS19345	0.53	-2.6
4,400,399	+		DDA3937_RS19345	0.53	-0.0
4,400,400	-		DDA3937_RS19345	0.53	-1.0
4,400,400	-		DDA3937_RS19345	0.53	+2.4
4,400,400	-		DDA3937_RS19345	0.53	-0.6
4,400,400	-		DDA3937_RS19345	0.53	-2.3
4,400,400	-		DDA3937_RS19345	0.53	-0.3
4,400,400	-		DDA3937_RS19345	0.53	-1.6
4,400,549	+		DDA3937_RS19345	0.62	+0.9
4,400,550	-		DDA3937_RS19345	0.62	+0.0
4,400,550	-		DDA3937_RS19345	0.62	-1.0
4,400,634	+		DDA3937_RS19345	0.67	+0.9
4,400,634	+		DDA3937_RS19345	0.67	-1.8
4,400,634	+		DDA3937_RS19345	0.67	-0.8
4,400,634	+				+1.3
4,400,634	+		DDA3937_RS19345	0.67	+0.7
4,400,635	-		DDA3937_RS19345	0.67	-0.6
4,400,635	-		DDA3937_RS19345	0.67	+0.1
4,400,676	-		DDA3937_RS19345	0.70	+1.9
4,400,676	-		DDA3937_RS19345	0.70	-0.7
4,400,676	-		DDA3937_RS19345	0.70	+1.1
4,400,676	-		DDA3937_RS19345	0.70	-1.4
4,400,700	+		DDA3937_RS19345	0.71	+1.8
4,400,701	-		DDA3937_RS19345	0.71	+0.1
4,400,703	+		DDA3937_RS19345	0.71	-1.5
4,400,704	-		DDA3937_RS19345	0.71	-1.3
4,400,750	+		DDA3937_RS19345	0.74	-1.0
4,400,792	+		DDA3937_RS19345	0.77	-2.3
4,400,792	+		DDA3937_RS19345	0.77	+0.5
4,400,793	-		DDA3937_RS19345	0.77	-0.3
4,400,793	-				-1.5
4,400,796	+		DDA3937_RS19345	0.77	+0.0
4,400,796	+		DDA3937_RS19345	0.77	+0.1
4,400,796	+		DDA3937_RS19345	0.77	-0.4
4,400,797	-		DDA3937_RS19345	0.77	-2.6
4,400,797	-		DDA3937_RS19345	0.77	+2.3
4,400,797	-		DDA3937_RS19345	0.77	-0.2
4,400,804	+		DDA3937_RS19345	0.77	+2.4
4,400,805	-		DDA3937_RS19345	0.77	-0.4
4,400,815	-		DDA3937_RS19345	0.78	-0.5
4,400,818	+		DDA3937_RS19345	0.78	-0.0
4,400,818	+		DDA3937_RS19345	0.78	+0.2
4,400,819	-		DDA3937_RS19345	0.78	-1.3
4,400,819	-		DDA3937_RS19345	0.78	+1.1
4,400,819	-		DDA3937_RS19345	0.78	-0.6
4,400,819	-		DDA3937_RS19345	0.78	+1.3
4,400,819	-		DDA3937_RS19345	0.78	-0.3
4,400,823	+		DDA3937_RS19345	0.78	+0.4
4,400,823	+		DDA3937_RS19345	0.78	+0.4
4,400,823	+		DDA3937_RS19345	0.78	+0.9
4,400,823	+		DDA3937_RS19345	0.78	+0.1
4,400,823	+		DDA3937_RS19345	0.78	+2.1
4,400,824	-		DDA3937_RS19345	0.79	-2.2
4,400,824	-		DDA3937_RS19345	0.79	-1.0
4,400,824	-		DDA3937_RS19345	0.79	-0.3
4,400,824	-		DDA3937_RS19345	0.79	-0.2
4,400,824	-		DDA3937_RS19345	0.79	-2.5
4,400,825	+		DDA3937_RS19345	0.79	-0.3
4,400,825	+		DDA3937_RS19345	0.79	-0.3
4,400,825	+		DDA3937_RS19345	0.79	-1.0
4,400,826	-		DDA3937_RS19345	0.79	+0.4
4,400,826	-		DDA3937_RS19345	0.79	-0.3
4,400,826	-		DDA3937_RS19345	0.79	-1.0
4,400,835	-		DDA3937_RS19345	0.79	+0.5
4,400,843	+		DDA3937_RS19345	0.80	+0.6
4,400,843	+				-1.3
4,400,844	-		DDA3937_RS19345	0.80	-0.1
4,400,844	-		DDA3937_RS19345	0.80	+0.2
4,400,868	-		DDA3937_RS19345	0.81	-0.7
4,400,931	+		DDA3937_RS19345	0.85	+1.4
4,400,931	+		DDA3937_RS19345	0.85	-1.9
4,400,932	-		DDA3937_RS19345	0.85	-0.0
4,400,949	+		DDA3937_RS19345	0.86	-0.3
4,401,110	+				-0.1
4,401,110	+				-1.0
4,401,110	+				+0.6
4,401,111	-				+0.6
4,401,111	-				-0.7
4,401,129	+				+0.9
4,401,130	-				+2.6
4,401,146	+				-0.4
4,401,199	+				+1.4
4,401,199	+				-0.4
4,401,199	+				-1.1
4,401,199	+				-0.6
4,401,199	+				-0.6
4,401,199	+				+0.3
4,401,200	-				+0.4
4,401,200	-				+0.5
4,401,200	-				+0.4
4,401,200	-				-0.6
4,401,200	-				+0.1
4,401,200	-				+1.6
4,401,200	-				-1.7
4,401,207	+				-1.5
4,401,219	+				+0.8
4,401,220	-				+0.6
4,401,245	+		DDA3937_RS19350	0.11	-0.4
4,401,245	+		DDA3937_RS19350	0.11	+0.5
4,401,245	+		DDA3937_RS19350	0.11	-1.0
4,401,245	+		DDA3937_RS19350	0.11	-0.4
4,401,245	+		DDA3937_RS19350	0.11	+0.4
4,401,246	-		DDA3937_RS19350	0.11	-2.6
4,401,246	-		DDA3937_RS19350	0.11	-1.6
4,401,246	-		DDA3937_RS19350	0.11	-1.1
4,401,246	-		DDA3937_RS19350	0.11	+0.4
4,401,246	-		DDA3937_RS19350	0.11	-1.8
4,401,246	-		DDA3937_RS19350	0.11	-0.8
4,401,246	-		DDA3937_RS19350	0.11	-1.2
4,401,306	-		DDA3937_RS19350	0.20	-2.0
4,401,306	-		DDA3937_RS19350	0.20	-2.0
4,401,360	+		DDA3937_RS19350	0.28	-1.0
4,401,464	+		DDA3937_RS19350	0.43	+0.3
4,401,464	+		DDA3937_RS19350	0.43	-0.3
4,401,464	+		DDA3937_RS19350	0.43	-0.5
4,401,464	+		DDA3937_RS19350	0.43	-2.4
4,401,464	+		DDA3937_RS19350	0.43	+2.1
4,401,465	-		DDA3937_RS19350	0.44	-1.3
4,401,465	-		DDA3937_RS19350	0.44	+0.2
4,401,465	-		DDA3937_RS19350	0.44	-0.3
4,401,465	-		DDA3937_RS19350	0.44	-0.2
4,401,465	-		DDA3937_RS19350	0.44	+0.2
4,401,465	-		DDA3937_RS19350	0.44	+1.3
4,401,465	-		DDA3937_RS19350	0.44	+0.5
4,401,465	-		DDA3937_RS19350	0.44	-0.5
4,401,465	-		DDA3937_RS19350	0.44	-1.3
4,401,471	+		DDA3937_RS19350	0.45	+0.1
4,401,472	-		DDA3937_RS19350	0.45	-0.8
4,401,472	-		DDA3937_RS19350	0.45	-2.6
4,401,607	+		DDA3937_RS19350	0.65	-0.9
4,401,608	-		DDA3937_RS19350	0.65	-0.7
4,401,678	+		DDA3937_RS19350	0.75	-1.5
4,401,678	+		DDA3937_RS19350	0.75	+0.3
4,401,678	+		DDA3937_RS19350	0.75	-0.0
4,401,679	-		DDA3937_RS19350	0.76	+0.7
4,401,679	-		DDA3937_RS19350	0.76	-2.0
4,401,679	-		DDA3937_RS19350	0.76	-1.0
4,401,679	-		DDA3937_RS19350	0.76	-1.2
4,401,708	-		DDA3937_RS19350	0.80	+5.8
4,401,708	-		DDA3937_RS19350	0.80	-1.1
4,401,751	+		DDA3937_RS19350	0.86	-0.2
4,401,752	-		DDA3937_RS19350	0.87	-1.8
4,401,790	+				-1.7
4,401,790	+				+0.3
4,401,791	-				+0.8
4,401,813	-				+0.0
4,401,813	-				+0.8
4,401,870	+				+0.8
4,401,870	+				-0.6
4,401,871	-				+0.4
4,401,912	+				+0.2
4,401,913	-				-0.7
4,401,933	+				+0.5
4,401,934	-				+0.4
4,402,039	+		DDA3937_RS19355	0.18	+3.2
4,402,039	+		DDA3937_RS19355	0.18	-0.1
4,402,040	-		DDA3937_RS19355	0.18	+1.7
4,402,040	-		DDA3937_RS19355	0.18	+0.3
4,402,140	+		DDA3937_RS19355	0.27	-0.5
4,402,158	-		DDA3937_RS19355	0.28	-0.2