Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18660

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,264,569	+		DDA3937_RS18655	0.33	-1.9
4,264,570	-		DDA3937_RS18655	0.33	-0.5
4,264,571	+		DDA3937_RS18655	0.33	-1.3
4,264,571	+		DDA3937_RS18655	0.33	-1.7
4,264,571	+		DDA3937_RS18655	0.33	-1.5
4,264,617	-		DDA3937_RS18655	0.36	-2.8
4,264,617	-		DDA3937_RS18655	0.36	-2.6
4,264,624	+		DDA3937_RS18655	0.37	-2.7
4,264,665	+		DDA3937_RS18655	0.40	-1.3
4,264,666	-		DDA3937_RS18655	0.40	-3.0
4,264,683	+		DDA3937_RS18655	0.41	-1.2
4,264,684	-		DDA3937_RS18655	0.41	-0.5
4,264,695	-		DDA3937_RS18655	0.42	+0.7
4,264,725	+		DDA3937_RS18655	0.44	-1.5
4,264,725	+		DDA3937_RS18655	0.44	-2.9
4,264,725	+		DDA3937_RS18655	0.44	-0.3
4,264,726	-		DDA3937_RS18655	0.44	-0.2
4,264,729	+		DDA3937_RS18655	0.44	-0.7
4,264,777	+		DDA3937_RS18655	0.48	-1.7
4,264,777	+		DDA3937_RS18655	0.48	-0.9
4,264,781	+		DDA3937_RS18655	0.48	+1.1
4,264,781	+		DDA3937_RS18655	0.48	-3.4
4,264,781	+		DDA3937_RS18655	0.48	-0.7
4,264,781	+		DDA3937_RS18655	0.48	+1.1
4,264,781	+		DDA3937_RS18655	0.48	-0.5
4,264,782	-		DDA3937_RS18655	0.48	-2.4
4,264,782	-		DDA3937_RS18655	0.48	-2.6
4,264,812	-		DDA3937_RS18655	0.50	+2.6
4,264,812	-		DDA3937_RS18655	0.50	-3.3
4,264,814	+		DDA3937_RS18655	0.50	-1.7
4,264,814	+		DDA3937_RS18655	0.50	-1.5
4,264,814	+		DDA3937_RS18655	0.50	-3.4
4,264,836	-		DDA3937_RS18655	0.52	+1.3
4,264,838	+		DDA3937_RS18655	0.52	-0.8
4,265,007	-		DDA3937_RS18655	0.64	-1.2
4,265,022	+		DDA3937_RS18655	0.65	-1.8
4,265,022	+		DDA3937_RS18655	0.65	-0.3
4,265,022	+		DDA3937_RS18655	0.65	-0.3
4,265,022	+		DDA3937_RS18655	0.65	-1.3
4,265,022	+		DDA3937_RS18655	0.65	-1.1
4,265,022	+				-0.3
4,265,023	-		DDA3937_RS18655	0.65	-0.9
4,265,023	-		DDA3937_RS18655	0.65	-2.9
4,265,023	-		DDA3937_RS18655	0.65	-0.1
4,265,024	+		DDA3937_RS18655	0.65	-1.4
4,265,024	+		DDA3937_RS18655	0.65	-1.5
4,265,024	+		DDA3937_RS18655	0.65	-2.4
4,265,024	+		DDA3937_RS18655	0.65	-2.5
4,265,024	+		DDA3937_RS18655	0.65	+1.3
4,265,025	-		DDA3937_RS18655	0.65	-0.4
4,265,025	-		DDA3937_RS18655	0.65	-1.1
4,265,025	-		DDA3937_RS18655	0.65	-0.7
4,265,025	-		DDA3937_RS18655	0.65	-0.6
4,265,025	-		DDA3937_RS18655	0.65	+0.9
4,265,025	-		DDA3937_RS18655	0.65	-0.2
4,265,025	-		DDA3937_RS18655	0.65	-1.3
4,265,030	+		DDA3937_RS18655	0.66	-1.2
4,265,066	+		DDA3937_RS18655	0.68	-1.4
4,265,131	+		DDA3937_RS18655	0.73	-0.2
4,265,131	+		DDA3937_RS18655	0.73	-1.9
4,265,175	+		DDA3937_RS18655	0.76	-0.3
4,265,175	+		DDA3937_RS18655	0.76	-2.8
4,265,176	-		DDA3937_RS18655	0.76	-1.2
4,265,196	+		DDA3937_RS18655	0.78	-0.7
4,265,243	+		DDA3937_RS18655	0.81	-0.7
4,265,243	+		DDA3937_RS18655	0.81	+0.3
4,265,244	-		DDA3937_RS18655	0.81	-1.5
4,265,299	-				+1.3
4,265,299	-		DDA3937_RS18655	0.85	-0.1
4,265,349	-		DDA3937_RS18655	0.89	-1.4
4,265,349	-		DDA3937_RS18655	0.89	-0.3
4,265,357	+		DDA3937_RS18655	0.89	-1.7
4,265,358	-		DDA3937_RS18655	0.89	-1.8
4,265,368	+				-3.5
4,265,368	+				-1.7
4,265,368	+				-1.4
4,265,368	+				-1.9
4,265,368	+				-0.7
4,265,368	+				-2.8
4,265,369	-				-0.4
4,265,369	-				-1.1
4,265,369	-				-0.6
4,265,414	+				-0.6
4,265,414	+				-2.9
4,265,414	+				-2.3
4,265,414	+				-2.4
4,265,414	+				-2.3
4,265,414	+				-1.7
4,265,414	+				-2.5
4,265,414	+				-0.7
4,265,415	-				-0.9
4,265,415	-				-2.6
4,265,415	-				-1.0
4,265,415	-				-0.6
4,265,415	-				-0.1
4,265,415	-				-0.5
4,265,415	-				-2.4
4,265,415	-				-0.2
4,265,415	-				-0.8
4,265,415	-				+0.9
4,265,415	-				-0.7
4,265,472	+				-0.8
4,265,493	-				-0.5
4,265,500	+				+0.0
4,265,500	+				-1.5
4,265,500	+				-0.1
4,265,501	-				-0.4
4,265,501	-				-2.9
4,265,508	+				-0.7
4,265,508	+				+0.8
4,265,529	+				-3.4
4,265,529	+				-2.4
4,265,529	+				-0.2
4,265,529	+				-1.1
4,265,529	+				-0.7
4,265,529	+				-1.2
4,265,530	-				-1.2
4,265,530	-				-0.0
4,265,531	+				-2.0
4,265,531	+				-3.1
4,265,531	+				-2.1
4,265,531	+				-2.2
4,265,531	+				-1.3
4,265,531	+				-0.6
4,265,531	+				-0.4
4,265,531	+				-0.2
4,265,531	+				-0.9
4,265,531	+				-1.4
4,265,531	+				-1.2
4,265,531	+				-1.5
4,265,531	+				-1.8
4,265,531	+				-2.1
4,265,531	+				-0.7
4,265,531	+				+0.0
4,265,531	+				-1.5
4,265,531	+				-1.7
4,265,531	+				-1.4
4,265,531	+				-1.1
4,265,532	-				-2.9
4,265,532	-				-0.3
4,265,532	-				-0.6
4,265,532	-				-0.2
4,265,532	-				-1.8
4,265,532	-				-0.8
4,265,532	-				+0.5
4,265,532	-				-2.1
4,265,532	-				-0.3
4,265,532	-				-1.2
4,265,532	-				+0.3
4,265,532	-				-0.3
4,265,532	-				+0.1
4,265,532	-				-0.7
4,265,559	+				-2.6
4,265,559	+				+0.5
4,265,578	+				-3.7
4,265,579	-				-2.5
4,265,653	+				+2.0
4,265,654	-				-0.7
4,265,659	+				-3.1
4,265,659	+				+0.1
4,265,659	+				-3.7
4,265,659	+				-0.2
4,265,660	-				+1.1
4,265,660	-				+0.3
4,265,746	+		DDA3937_RS18660	0.16	-0.7
4,265,746	+		DDA3937_RS18660	0.16	-0.7
4,265,746	+		DDA3937_RS18660	0.16	-2.4
4,265,747	-		DDA3937_RS18660	0.16	-1.2
4,265,747	-		DDA3937_RS18660	0.16	-2.7
4,265,747	-		DDA3937_RS18660	0.16	-0.6
4,265,747	-		DDA3937_RS18660	0.16	-3.5
4,265,747	-		DDA3937_RS18660	0.16	-1.6
4,265,747	-		DDA3937_RS18660	0.16	-1.5
4,265,747	-		DDA3937_RS18660	0.16	-1.9
4,265,772	+		DDA3937_RS18660	0.17	-1.0
4,265,772	+		DDA3937_RS18660	0.17	-0.2
4,265,772	+		DDA3937_RS18660	0.17	+0.4
4,265,772	+		DDA3937_RS18660	0.17	-1.1
4,265,773	-		DDA3937_RS18660	0.18	+0.0
4,265,773	-				-0.3
4,265,773	-		DDA3937_RS18660	0.18	-1.2
4,265,773	-		DDA3937_RS18660	0.18	-2.4
4,265,773	-		DDA3937_RS18660	0.18	-1.1
4,265,773	-		DDA3937_RS18660	0.18	-4.0
4,265,773	-		DDA3937_RS18660	0.18	-0.9
4,265,773	-		DDA3937_RS18660	0.18	-1.2
4,265,773	-		DDA3937_RS18660	0.18	-1.4
4,265,807	+		DDA3937_RS18660	0.20	-1.8
4,265,841	+		DDA3937_RS18660	0.22	-0.2
4,265,842	-		DDA3937_RS18660	0.23	-2.5
4,265,906	+		DDA3937_RS18660	0.27	-0.5
4,265,906	+		DDA3937_RS18660	0.27	+1.3
4,265,907	-		DDA3937_RS18660	0.27	-1.1
4,265,967	+		DDA3937_RS18660	0.32	-2.5
4,265,967	+		DDA3937_RS18660	0.32	-1.3
4,265,967	+		DDA3937_RS18660	0.32	-1.1
4,265,968	-		DDA3937_RS18660	0.32	-1.6
4,265,968	-		DDA3937_RS18660	0.32	-1.1
4,265,969	+		DDA3937_RS18660	0.32	-0.8
4,265,969	+		DDA3937_RS18660	0.32	-0.2
4,265,970	-		DDA3937_RS18660	0.32	-0.7
4,265,983	+		DDA3937_RS18660	0.33	-1.1
4,265,983	+		DDA3937_RS18660	0.33	-2.1
4,265,983	+		DDA3937_RS18660	0.33	-0.3
4,265,983	+		DDA3937_RS18660	0.33	-1.8
4,265,983	+		DDA3937_RS18660	0.33	-1.4
4,265,984	-		DDA3937_RS18660	0.33	-1.4
4,265,984	-		DDA3937_RS18660	0.33	-1.6
4,265,984	-		DDA3937_RS18660	0.33	-2.0
4,265,994	+		DDA3937_RS18660	0.34	-1.3
4,265,994	+		DDA3937_RS18660	0.34	-2.7
4,265,994	+		DDA3937_RS18660	0.34	-2.3
4,265,994	+		DDA3937_RS18660	0.34	-1.1
4,265,994	+		DDA3937_RS18660	0.34	-1.3
4,265,995	-		DDA3937_RS18660	0.34	-0.3
4,265,995	-		DDA3937_RS18660	0.34	-1.6
4,265,995	-		DDA3937_RS18660	0.34	+0.0
4,265,995	-		DDA3937_RS18660	0.34	-1.4
4,265,995	-		DDA3937_RS18660	0.34	-0.5
4,265,995	-		DDA3937_RS18660	0.34	-1.5
4,266,007	+		DDA3937_RS18660	0.35	-1.3
4,266,007	+		DDA3937_RS18660	0.35	-1.7
4,266,007	+		DDA3937_RS18660	0.35	-1.5
4,266,007	+		DDA3937_RS18660	0.35	-2.1
4,266,007	+		DDA3937_RS18660	0.35	-1.9
4,266,007	+		DDA3937_RS18660	0.35	-2.1
4,266,007	+				-0.3
4,266,007	+		DDA3937_RS18660	0.35	-1.9
4,266,007	+		DDA3937_RS18660	0.35	-0.2
4,266,007	+		DDA3937_RS18660	0.35	-2.1
4,266,007	+		DDA3937_RS18660	0.35	-1.7
4,266,007	+		DDA3937_RS18660	0.35	-1.3
4,266,015	+		DDA3937_RS18660	0.35	-1.8
4,266,015	+		DDA3937_RS18660	0.35	+0.7
4,266,015	+		DDA3937_RS18660	0.35	-2.2
4,266,015	+		DDA3937_RS18660	0.35	+0.0
4,266,016	-		DDA3937_RS18660	0.35	-1.7
4,266,016	-		DDA3937_RS18660	0.35	-0.6
4,266,016	-		DDA3937_RS18660	0.35	-1.9
4,266,055	+		DDA3937_RS18660	0.38	-1.7
4,266,056	-		DDA3937_RS18660	0.38	-1.4
4,266,141	-		DDA3937_RS18660	0.44	-0.4
4,266,141	-		DDA3937_RS18660	0.44	-2.8
4,266,148	+		DDA3937_RS18660	0.45	-1.0
4,266,148	+		DDA3937_RS18660	0.45	-1.3
4,266,149	-		DDA3937_RS18660	0.45	-1.3
4,266,149	-		DDA3937_RS18660	0.45	-1.1
4,266,149	-		DDA3937_RS18660	0.45	-2.2
4,266,168	-		DDA3937_RS18660	0.46	-1.8
4,266,168	-		DDA3937_RS18660	0.46	-2.2
4,266,168	-		DDA3937_RS18660	0.46	-0.5
4,266,168	-		DDA3937_RS18660	0.46	-1.7
4,266,168	-		DDA3937_RS18660	0.46	-2.5
4,266,168	-		DDA3937_RS18660	0.46	-2.0
4,266,218	+		DDA3937_RS18660	0.50	-1.2
4,266,218	+		DDA3937_RS18660	0.50	-1.3
4,266,218	+		DDA3937_RS18660	0.50	-1.6
4,266,218	+		DDA3937_RS18660	0.50	-2.9
4,266,218	+		DDA3937_RS18660	0.50	-0.2
4,266,218	+		DDA3937_RS18660	0.50	-1.8
4,266,219	-		DDA3937_RS18660	0.50	-1.3
4,266,219	-		DDA3937_RS18660	0.50	-0.8
4,266,242	+		DDA3937_RS18660	0.52	-1.1
4,266,242	+		DDA3937_RS18660	0.52	+0.6
4,266,242	+		DDA3937_RS18660	0.52	-1.3
4,266,242	+		DDA3937_RS18660	0.52	-2.0
4,266,242	+		DDA3937_RS18660	0.52	-0.9
4,266,243	-		DDA3937_RS18660	0.52	-2.3
4,266,243	-		DDA3937_RS18660	0.52	-0.0
4,266,294	+		DDA3937_RS18660	0.55	-1.9
4,266,295	-		DDA3937_RS18660	0.56	-1.1
4,266,299	+		DDA3937_RS18660	0.56	-1.6
4,266,299	+		DDA3937_RS18660	0.56	-0.5
4,266,299	+		DDA3937_RS18660	0.56	-2.7
4,266,299	+		DDA3937_RS18660	0.56	-0.7
4,266,300	-		DDA3937_RS18660	0.56	-0.7
4,266,325	-		DDA3937_RS18660	0.58	-1.2
4,266,325	-		DDA3937_RS18660	0.58	-0.3
4,266,325	-		DDA3937_RS18660	0.58	-1.1
4,266,325	-		DDA3937_RS18660	0.58	-1.5
4,266,327	+		DDA3937_RS18660	0.58	-1.9
4,266,327	+		DDA3937_RS18660	0.58	-1.4
4,266,327	+		DDA3937_RS18660	0.58	-1.9
4,266,327	+		DDA3937_RS18660	0.58	-1.8
4,266,327	+		DDA3937_RS18660	0.58	-2.8
4,266,327	+		DDA3937_RS18660	0.58	-0.6
4,266,327	+		DDA3937_RS18660	0.58	-0.2
4,266,327	+		DDA3937_RS18660	0.58	-0.2
4,266,327	+		DDA3937_RS18660	0.58	-2.1
4,266,327	+		DDA3937_RS18660	0.58	-1.6
4,266,328	-		DDA3937_RS18660	0.58	-1.3
4,266,328	-		DDA3937_RS18660	0.58	+0.6
4,266,328	-		DDA3937_RS18660	0.58	-1.7
4,266,328	-		DDA3937_RS18660	0.58	+0.4
4,266,328	-		DDA3937_RS18660	0.58	-0.9
4,266,328	-		DDA3937_RS18660	0.58	-0.5
4,266,328	-		DDA3937_RS18660	0.58	-1.2
4,266,328	-		DDA3937_RS18660	0.58	-1.1
4,266,328	-		DDA3937_RS18660	0.58	-1.3
4,266,328	-				-1.1
4,266,425	+		DDA3937_RS18660	0.65	-2.7
4,266,508	-		DDA3937_RS18660	0.71	-2.5
4,266,508	-		DDA3937_RS18660	0.71	-2.6
4,266,534	+		DDA3937_RS18660	0.73	-0.9
4,266,534	+		DDA3937_RS18660	0.73	-2.1
4,266,534	+		DDA3937_RS18660	0.73	-0.6
4,266,535	-		DDA3937_RS18660	0.73	-0.7
4,266,567	-		DDA3937_RS18660	0.75	+1.5
4,266,596	-		DDA3937_RS18660	0.77	-0.4
4,266,596	-		DDA3937_RS18660	0.77	-1.4
4,266,596	-		DDA3937_RS18660	0.77	+0.3
4,266,649	+		DDA3937_RS18660	0.81	-4.1
4,266,650	-		DDA3937_RS18660	0.81	-1.0
4,266,724	-		DDA3937_RS18660	0.87	-0.6
4,266,751	-		DDA3937_RS18660	0.89	-0.3
4,266,774	+				-2.4
4,266,836	-				-1.1
4,266,893	+				+0.3
4,266,896	+				+0.2
4,266,906	+				+0.1
4,266,936	+				-0.1
4,266,938	+				-1.7
4,266,938	+				-1.6
4,266,938	+				-0.1
4,266,938	+				-1.1
4,266,938	+				+3.3
4,266,939	-				+1.2
4,266,969	+				+1.0
4,266,970	-				-2.1
4,266,989	+				-0.8
4,266,990	-				-0.3
4,267,034	-				-0.9
4,267,036	+				-1.0
4,267,057	+		DDA3937_RS18665	0.10	+0.0
4,267,057	+		DDA3937_RS18665	0.10	-0.1
4,267,057	+		DDA3937_RS18665	0.10	-0.5
4,267,058	-		DDA3937_RS18665	0.10	+0.5
4,267,058	-		DDA3937_RS18665	0.10	-0.6
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